data_3OF6
#
_model_server_result.job_id            Xvw8_n05PKv9MRFvxzjE7g 
_model_server_result.datetime_utc      '2024-10-20 03:25:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3of6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":1000}' 
#
_entry.id    3OF6 
#
_exptl.entry_id    3OF6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3OF6 
_cell.length_a            114.902 
_cell.length_b            114.902 
_cell.length_c            183.101 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3OF6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,H,K,N 1 1,2 
B,C,E,F,G,I,J,L,M,O,P 2 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_435 x-y-1,-y-2,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 -199.016102 61.033667 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 26 A CYS 23 1_555 A SG CYS 95 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 A SG CYS 147 A CYS 148 1_555 A SG CYS 212 A CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf3 B SG CYS 26 B CYS 23 1_555 B SG CYS 95 B CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 B SG CYS 147 B CYS 148 1_555 B SG CYS 212 B CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf5 C SG CYS 26 C CYS 23 1_555 C SG CYS 95 C CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf6 C SG CYS 147 C CYS 148 1_555 C SG CYS 212 C CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf7 D SG CYS 35 D CYS 31 1_555 D SG CYS 95 D CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf8 E SG CYS 35 E CYS 31 1_555 E SG CYS 95 E CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf9 F SG CYS 35 F CYS 31 1_555 F SG CYS 95 F CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
covale ? covale1 C ND2 ASN 186 C ASN 187 1_555 G C1 NAG . C NAG 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale2 D ND2 ASN 55 D ASN 51 1_555 H C1 NAG . D NAG 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale3 E ND2 ASN 55 E ASN 51 1_555 I C1 NAG . E NAG 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale4 F ND2 ASN 55 F ASN 51 1_555 J C1 NAG . F NAG 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     3OF6 
_atom_sites.fract_transf_matrix[1][1]    0.008703 
_atom_sites.fract_transf_matrix[1][2]    0.005025 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010049 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005461 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 3 NAG C 1 1000 1000 NAG NAG . 
H 3 NAG D 1 1000 1000 NAG NAG . 
I 3 NAG E 1 1000 1000 NAG NAG . 
J 3 NAG F 1 1000 1000 NAG NAG . 
K 4 HOH A 1 257 6 HOH HOH . 
K 4 HOH A 2 258 15 HOH HOH . 
K 4 HOH A 3 259 29 HOH HOH . 
K 4 HOH A 4 260 31 HOH HOH . 
K 4 HOH A 5 261 35 HOH HOH . 
K 4 HOH A 6 262 37 HOH HOH . 
K 4 HOH A 7 263 42 HOH HOH . 
K 4 HOH A 8 264 45 HOH HOH . 
K 4 HOH A 9 265 54 HOH HOH . 
K 4 HOH A 10 266 67 HOH HOH . 
K 4 HOH A 11 267 69 HOH HOH . 
K 4 HOH A 12 268 93 HOH HOH . 
K 4 HOH A 13 269 94 HOH HOH . 
K 4 HOH A 14 270 95 HOH HOH . 
K 4 HOH A 15 271 96 HOH HOH . 
K 4 HOH A 16 272 97 HOH HOH . 
K 4 HOH A 17 273 99 HOH HOH . 
K 4 HOH A 18 274 112 HOH HOH . 
K 4 HOH A 19 275 117 HOH HOH . 
K 4 HOH A 20 276 120 HOH HOH . 
K 4 HOH A 21 277 127 HOH HOH . 
K 4 HOH A 22 278 129 HOH HOH . 
K 4 HOH A 23 279 130 HOH HOH . 
L 4 HOH B 1 257 8 HOH HOH . 
L 4 HOH B 2 258 10 HOH HOH . 
L 4 HOH B 3 259 17 HOH HOH . 
L 4 HOH B 4 260 34 HOH HOH . 
L 4 HOH B 5 261 36 HOH HOH . 
L 4 HOH B 6 262 40 HOH HOH . 
L 4 HOH B 7 263 62 HOH HOH . 
L 4 HOH B 8 264 68 HOH HOH . 
L 4 HOH B 9 265 86 HOH HOH . 
L 4 HOH B 10 266 87 HOH HOH . 
L 4 HOH B 11 267 88 HOH HOH . 
L 4 HOH B 12 268 89 HOH HOH . 
L 4 HOH B 13 269 90 HOH HOH . 
L 4 HOH B 14 270 91 HOH HOH . 
L 4 HOH B 15 271 113 HOH HOH . 
L 4 HOH B 16 272 122 HOH HOH . 
L 4 HOH B 17 273 123 HOH HOH . 
L 4 HOH B 18 274 124 HOH HOH . 
L 4 HOH B 19 275 126 HOH HOH . 
L 4 HOH B 20 276 138 HOH HOH . 
L 4 HOH B 21 277 143 HOH HOH . 
L 4 HOH B 22 278 144 HOH HOH . 
L 4 HOH B 23 279 145 HOH HOH . 
L 4 HOH B 24 280 146 HOH HOH . 
M 4 HOH C 1 257 2 HOH HOH . 
M 4 HOH C 2 258 12 HOH HOH . 
M 4 HOH C 3 259 14 HOH HOH . 
M 4 HOH C 4 260 18 HOH HOH . 
M 4 HOH C 5 261 22 HOH HOH . 
M 4 HOH C 6 262 25 HOH HOH . 
M 4 HOH C 7 263 27 HOH HOH . 
M 4 HOH C 8 264 28 HOH HOH . 
M 4 HOH C 9 265 30 HOH HOH . 
M 4 HOH C 10 266 39 HOH HOH . 
M 4 HOH C 11 267 41 HOH HOH . 
M 4 HOH C 12 268 51 HOH HOH . 
M 4 HOH C 13 269 53 HOH HOH . 
M 4 HOH C 14 270 55 HOH HOH . 
M 4 HOH C 15 271 56 HOH HOH . 
M 4 HOH C 16 272 63 HOH HOH . 
M 4 HOH C 17 273 64 HOH HOH . 
M 4 HOH C 18 274 70 HOH HOH . 
M 4 HOH C 19 275 72 HOH HOH . 
M 4 HOH C 20 276 75 HOH HOH . 
M 4 HOH C 21 277 77 HOH HOH . 
M 4 HOH C 22 278 78 HOH HOH . 
M 4 HOH C 23 279 80 HOH HOH . 
M 4 HOH C 24 280 83 HOH HOH . 
M 4 HOH C 25 281 84 HOH HOH . 
M 4 HOH C 26 282 85 HOH HOH . 
M 4 HOH C 27 283 114 HOH HOH . 
M 4 HOH C 28 284 119 HOH HOH . 
M 4 HOH C 29 285 125 HOH HOH . 
M 4 HOH C 30 286 132 HOH HOH . 
M 4 HOH C 31 287 136 HOH HOH . 
M 4 HOH C 32 288 139 HOH HOH . 
M 4 HOH C 33 289 140 HOH HOH . 
M 4 HOH C 34 290 142 HOH HOH . 
N 4 HOH D 1 127 65 HOH HOH . 
N 4 HOH D 2 128 128 HOH HOH . 
N 4 HOH D 3 129 66 HOH HOH . 
N 4 HOH D 4 130 98 HOH HOH . 
N 4 HOH D 5 131 106 HOH HOH . 
N 4 HOH D 6 132 107 HOH HOH . 
N 4 HOH D 7 133 108 HOH HOH . 
N 4 HOH D 8 134 110 HOH HOH . 
O 4 HOH E 1 127 1 HOH HOH . 
O 4 HOH E 2 128 3 HOH HOH . 
O 4 HOH E 3 129 92 HOH HOH . 
O 4 HOH E 4 130 104 HOH HOH . 
O 4 HOH E 5 131 105 HOH HOH . 
P 4 HOH F 1 127 57 HOH HOH . 
P 4 HOH F 2 128 58 HOH HOH . 
P 4 HOH F 3 129 59 HOH HOH . 
P 4 HOH F 4 130 60 HOH HOH . 
P 4 HOH F 5 131 73 HOH HOH . 
P 4 HOH F 6 132 74 HOH HOH . 
P 4 HOH F 7 133 133 HOH HOH . 
P 4 HOH F 8 134 100 HOH HOH . 
P 4 HOH F 9 135 135 HOH HOH . 
P 4 HOH F 10 136 102 HOH HOH . 
P 4 HOH F 11 137 103 HOH HOH . 
P 4 HOH F 12 138 111 HOH HOH . 
P 4 HOH F 13 139 115 HOH HOH . 
P 4 HOH F 14 140 116 HOH HOH . 
P 4 HOH F 15 141 141 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . G 3 41.725 -24.938 91.766 1 125.18 ? C1 NAG 1000 C 1 
HETATM 2 C C2 NAG . . . G 3 40.607 -25.249 90.772 1 124.58 ? C2 NAG 1000 C 1 
HETATM 3 C C3 NAG . . . G 3 40.822 -24.558 89.43 1 122.5 ? C3 NAG 1000 C 1 
HETATM 4 C C4 NAG . . . G 3 41.168 -23.092 89.628 1 122.98 ? C4 NAG 1000 C 1 
HETATM 5 C C5 NAG . . . G 3 42.321 -22.944 90.611 1 121.79 ? C5 NAG 1000 C 1 
HETATM 6 C C6 NAG . . . G 3 42.649 -21.476 90.845 1 117.77 ? C6 NAG 1000 C 1 
HETATM 7 C C7 NAG . . . G 3 41.513 -27.516 90.629 1 115.78 ? C7 NAG 1000 C 1 
HETATM 8 C C8 NAG . . . G 3 42.225 -27.801 89.341 1 100.47 ? C8 NAG 1000 C 1 
HETATM 9 N N2 NAG . . . G 3 40.478 -26.68 90.561 1 122.78 ? N2 NAG 1000 C 1 
HETATM 10 O O3 NAG . . . G 3 39.652 -24.665 88.651 1 121.15 ? O3 NAG 1000 C 1 
HETATM 11 O O4 NAG . . . G 3 41.53 -22.52 88.391 1 126.98 ? O4 NAG 1000 C 1 
HETATM 12 O O5 NAG . . . G 3 41.998 -23.552 91.843 1 124.93 ? O5 NAG 1000 C 1 
HETATM 13 O O6 NAG . . . G 3 41.5 -20.811 91.322 1 116.31 ? O6 NAG 1000 C 1 
HETATM 14 O O7 NAG . . . G 3 41.883 -28.047 91.675 1 119.96 ? O7 NAG 1000 C 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           356 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#