data_3OF8 # _model_server_result.job_id en1RcZsUs2VnmGWsgPgLqw _model_server_result.datetime_utc '2024-11-07 11:16:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3of8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 3OF8 # _exptl.entry_id 3OF8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 532.627 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Nalpha-[(benzyloxy)carbonyl]-N-[(2S)-1-(4-tert-butoxyphenyl)-4-hydroxy-3-oxobutan-2-yl]-L-phenylalaninamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3OF8 _cell.length_a 85.318 _cell.length_b 85.318 _cell.length_c 50.018 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OF8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 A CYS 23 1_555 A SG CYS 66 A CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf2 A SG CYS 57 A CYS 57 1_555 A SG CYS 99 A CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf3 A SG CYS 157 A CYS 157 1_555 A SG CYS 210 A CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? covale ? covale1 A SG CYS 26 A CYS 26 1_555 B C21 I0Y . A I0Y 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.834 ? # _chem_comp.formula 'C31 H36 N2 O6' _chem_comp.formula_weight 532.627 _chem_comp.id I0Y _chem_comp.mon_nstd_flag . _chem_comp.name Nalpha-[(benzyloxy)carbonyl]-N-[(2S)-1-(4-tert-butoxyphenyl)-4-hydroxy-3-oxobutan-2-yl]-L-phenylalaninamide _chem_comp.type peptide-like _chem_comp.pdbx_synonyms Z-Phe-Tyr(OBut)-COCHO # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O2 I0Y sing 152 n n C1 O1 I0Y doub 153 n n N1 C1 I0Y sing 154 n n N1 C9 I0Y sing 155 n n N1 HN1 I0Y sing 156 n n C2 H2 I0Y sing 157 n n C2 H2A I0Y sing 158 n n N2 HN2 I0Y sing 159 n n O2 C2 I0Y sing 160 n n C3 C2 I0Y sing 161 n n C3 C8 I0Y sing 162 n y O3 C10 I0Y doub 163 n n C4 C3 I0Y doub 164 n y C4 H4 I0Y sing 165 n n C5 C4 I0Y sing 166 n y C5 C6 I0Y doub 167 n y C5 H5 I0Y sing 168 n n O5 C24 I0Y sing 169 n n C6 C7 I0Y sing 170 n y C6 H6 I0Y sing 171 n n O6 C21 I0Y sing 172 n n O6 HO6 I0Y sing 173 n n C7 C8 I0Y doub 174 n y C7 H7 I0Y sing 175 n n C8 H8 I0Y sing 176 n n C9 C11 I0Y sing 177 n n C9 H9 I0Y sing 178 n n C10 N2 I0Y sing 179 n n C10 C9 I0Y sing 180 n n C11 C12 I0Y sing 181 n n C11 H11 I0Y sing 182 n n C11 H11A I0Y sing 183 n n C12 C14 I0Y sing 184 n y C13 C12 I0Y doub 185 n y C13 H13 I0Y sing 186 n n C14 H14 I0Y sing 187 n n C15 C13 I0Y sing 188 n y C15 C17 I0Y doub 189 n y C15 H15 I0Y sing 190 n n C16 C14 I0Y doub 191 n y C16 H16 I0Y sing 192 n n C17 C16 I0Y sing 193 n y C17 H17 I0Y sing 194 n n C18 C23 I0Y sing 195 n n C18 H18 I0Y sing 196 n n C18 H18A I0Y sing 197 n n C19 N2 I0Y sing 198 n n C19 C18 I0Y sing 199 n n C19 H19 I0Y sing 200 n n C20 O4 I0Y doub 201 n n C20 C19 I0Y sing 202 n n C21 C20 I0Y sing 203 n n C21 H21 I0Y sing 204 n n C21 H21A I0Y sing 205 n n C23 C28 I0Y sing 206 n y C24 C30 I0Y sing 207 n y C25 H25 I0Y sing 208 n n C25 H25A I0Y sing 209 n n C25 H25B I0Y sing 210 n n C26 O5 I0Y sing 211 n n C26 C25 I0Y sing 212 n n C27 C23 I0Y doub 213 n y C27 H27 I0Y sing 214 n n C28 H28 I0Y sing 215 n n C29 C24 I0Y doub 216 n y C29 C27 I0Y sing 217 n y C29 H29 I0Y sing 218 n n C30 C28 I0Y doub 219 n y C30 H30 I0Y sing 220 n n C32 C26 I0Y sing 221 n n C32 H32 I0Y sing 222 n n C32 H32A I0Y sing 223 n n C32 H32B I0Y sing 224 n n C33 C26 I0Y sing 225 n n C33 H33 I0Y sing 226 n n C33 H33A I0Y sing 227 n n C33 H33B I0Y sing 228 n n # _atom_sites.entry_id 3OF8 _atom_sites.fract_transf_matrix[1][1] 0.011721 _atom_sites.fract_transf_matrix[1][2] 0.006767 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013534 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019993 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 I0Y A 1 501 501 I0Y I0Y . C 3 HOH A 1 601 1 HOH HOH . C 3 HOH A 2 602 2 HOH HOH . C 3 HOH A 3 603 3 HOH HOH . C 3 HOH A 4 604 4 HOH HOH . C 3 HOH A 5 605 5 HOH HOH . C 3 HOH A 6 606 6 HOH HOH . C 3 HOH A 7 607 7 HOH HOH . C 3 HOH A 8 608 8 HOH HOH . C 3 HOH A 9 609 9 HOH HOH . C 3 HOH A 10 610 10 HOH HOH . C 3 HOH A 11 611 11 HOH HOH . C 3 HOH A 12 612 12 HOH HOH . C 3 HOH A 13 613 13 HOH HOH . C 3 HOH A 14 614 14 HOH HOH . C 3 HOH A 15 615 15 HOH HOH . C 3 HOH A 16 616 16 HOH HOH . C 3 HOH A 17 617 17 HOH HOH . C 3 HOH A 18 618 18 HOH HOH . C 3 HOH A 19 619 19 HOH HOH . C 3 HOH A 20 620 20 HOH HOH . C 3 HOH A 21 621 21 HOH HOH . C 3 HOH A 22 622 22 HOH HOH . C 3 HOH A 23 623 23 HOH HOH . C 3 HOH A 24 624 24 HOH HOH . C 3 HOH A 25 625 25 HOH HOH . C 3 HOH A 26 626 26 HOH HOH . C 3 HOH A 27 627 27 HOH HOH . C 3 HOH A 28 628 28 HOH HOH . C 3 HOH A 29 629 29 HOH HOH . C 3 HOH A 30 630 30 HOH HOH . C 3 HOH A 31 631 31 HOH HOH . C 3 HOH A 32 632 32 HOH HOH . C 3 HOH A 33 633 33 HOH HOH . C 3 HOH A 34 634 34 HOH HOH . C 3 HOH A 35 635 35 HOH HOH . C 3 HOH A 36 636 36 HOH HOH . C 3 HOH A 37 637 37 HOH HOH . C 3 HOH A 38 638 38 HOH HOH . C 3 HOH A 39 639 39 HOH HOH . C 3 HOH A 40 640 40 HOH HOH . C 3 HOH A 41 641 41 HOH HOH . C 3 HOH A 42 642 42 HOH HOH . C 3 HOH A 43 643 43 HOH HOH . C 3 HOH A 44 644 44 HOH HOH . C 3 HOH A 45 645 45 HOH HOH . C 3 HOH A 46 646 46 HOH HOH . C 3 HOH A 47 647 47 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 I0Y . . . B 2 29.744 7.264 2.792 1 37.86 ? C1 I0Y 501 A 1 HETATM 2 O O1 I0Y . . . B 2 29.032 6.323 3.23 1 40.36 ? O1 I0Y 501 A 1 HETATM 3 O O2 I0Y . . . B 2 31.011 7.262 2.915 1 47.84 ? O2 I0Y 501 A 1 HETATM 4 C C2 I0Y . . . B 2 31.77 6.104 2.992 1 42.03 ? C2 I0Y 501 A 1 HETATM 5 C C3 I0Y . . . B 2 32.745 5.977 1.851 1 41.5 ? C3 I0Y 501 A 1 HETATM 6 C C8 I0Y . . . B 2 34.091 6.275 2.04 1 34.24 ? C8 I0Y 501 A 1 HETATM 7 C C7 I0Y . . . B 2 34.967 6.174 0.956 1 43.89 ? C7 I0Y 501 A 1 HETATM 8 C C6 I0Y . . . B 2 34.485 5.799 -0.305 1 45.99 ? C6 I0Y 501 A 1 HETATM 9 C C5 I0Y . . . B 2 33.128 5.522 -0.49 1 40.25 ? C5 I0Y 501 A 1 HETATM 10 C C4 I0Y . . . B 2 32.255 5.613 0.594 1 40.51 ? C4 I0Y 501 A 1 HETATM 11 N N1 I0Y . . . B 2 29.106 8.502 2.473 1 40.2 ? N1 I0Y 501 A 1 HETATM 12 C C9 I0Y . . . B 2 27.804 8.49 3.275 1 34.3 ? C9 I0Y 501 A 1 HETATM 13 C C10 I0Y . . . B 2 26.616 7.817 2.45 1 36.03 ? C10 I0Y 501 A 1 HETATM 14 O O3 I0Y . . . B 2 26.574 7.656 1.241 1 33.53 ? O3 I0Y 501 A 1 HETATM 15 C C11 I0Y . . . B 2 27.353 9.798 4.102 1 33.27 ? C11 I0Y 501 A 1 HETATM 16 C C12 I0Y . . . B 2 28.307 10.965 4.113 1 27.26 ? C12 I0Y 501 A 1 HETATM 17 C C13 I0Y . . . B 2 28.466 11.627 2.918 1 28.68 ? C13 I0Y 501 A 1 HETATM 18 C C14 I0Y . . . B 2 29.01 11.351 5.242 1 29.75 ? C14 I0Y 501 A 1 HETATM 19 C C15 I0Y . . . B 2 29.342 12.694 2.837 1 34.25 ? C15 I0Y 501 A 1 HETATM 20 C C16 I0Y . . . B 2 29.885 12.431 5.161 1 25.71 ? C16 I0Y 501 A 1 HETATM 21 C C17 I0Y . . . B 2 30.051 13.096 3.958 1 29.23 ? C17 I0Y 501 A 1 HETATM 22 N N2 I0Y . . . B 2 25.516 7.541 3.33 1 34.92 ? N2 I0Y 501 A 1 HETATM 23 O O4 I0Y . . . B 2 22.405 7.611 3.761 1 38.79 ? O4 I0Y 501 A 1 HETATM 24 O O5 I0Y . . . B 2 19.054 3.846 4.043 1 60.77 ? O5 I0Y 501 A 1 HETATM 25 O O6 I0Y . . . B 2 21.457 7.995 1.549 1 32.61 ? O6 I0Y 501 A 1 HETATM 26 C C18 I0Y . . . B 2 24.425 5.55 4.136 1 35.52 ? C18 I0Y 501 A 1 HETATM 27 C C19 I0Y . . . B 2 24.473 6.598 3.011 1 41.33 ? C19 I0Y 501 A 1 HETATM 28 C C20 I0Y . . . B 2 23.217 7.43 2.855 1 44.21 ? C20 I0Y 501 A 1 HETATM 29 C C21 I0Y . . . B 2 22.836 7.957 1.655 1 34.7 ? C21 I0Y 501 A 1 HETATM 30 C C23 I0Y . . . B 2 23.057 5.001 4.312 1 31.42 ? C23 I0Y 501 A 1 HETATM 31 C C24 I0Y . . . B 2 20.414 4.232 4.228 1 44.03 ? C24 I0Y 501 A 1 HETATM 32 C C25 I0Y . . . B 2 17.967 5.973 4.112 1 52.52 ? C25 I0Y 501 A 1 HETATM 33 C C26 I0Y . . . B 2 18.14 4.696 3.332 1 58.09 ? C26 I0Y 501 A 1 HETATM 34 C C28 I0Y . . . B 2 22.354 4.916 5.522 1 30.33 ? C28 I0Y 501 A 1 HETATM 35 C C27 I0Y . . . B 2 22.476 4.737 3.099 1 34.56 ? C27 I0Y 501 A 1 HETATM 36 C C30 I0Y . . . B 2 21.005 4.517 5.479 1 30.7 ? C30 I0Y 501 A 1 HETATM 37 C C29 I0Y . . . B 2 21.151 4.345 3.063 1 34.8 ? C29 I0Y 501 A 1 HETATM 38 C C32 I0Y . . . B 2 18.61 5.049 1.945 1 50.48 ? C32 I0Y 501 A 1 HETATM 39 C C33 I0Y . . . B 2 16.789 4.016 3.142 1 63.33 ? C33 I0Y 501 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 39 #