data_3OGJ # _model_server_result.job_id H8Y0LHw6gbwaZOyhupC1NA _model_server_result.datetime_utc '2025-03-04 14:08:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ogj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":250}' # _entry.id 3OGJ # _exptl.entry_id 3OGJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 329.206 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3OGJ _cell.length_a 62.588 _cell.length_b 62.588 _cell.length_c 199.522 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OGJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 PISA monomeric 1 software_defined_assembly 3 PISA monomeric 1 software_defined_assembly 4 PISA monomeric 1 software_defined_assembly 5 PISA monomeric 1 software_defined_assembly 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I 1 1 D,H,K 1 2 B,F,J 2 1 C,G 2 3 A,E,I 3 1 B,F,J 4 1 C,G 5 1 D,H,K 6 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,-x,z+1/4 0 1 0 -1 0 0 0 0 1 0 0 49.8805 3 'crystal symmetry operation' 3_564 -y,x+1,z-1/4 0 -1 0 1 0 0 0 0 1 0 62.588 -49.8805 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N # _chem_comp.formula 'C10 H12 N5 O6 P' _chem_comp.formula_weight 329.206 _chem_comp.id CMP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'CYCLIC AMP;CAMP' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P CMP doub 70 n n P O2P CMP sing 71 n n P O5' CMP sing 72 n n P O3' CMP sing 73 n n O2P HOP2 CMP sing 74 n n O5' C5' CMP sing 75 n n C5' C4' CMP sing 76 n n C5' "H5'1" CMP sing 77 n n C5' "H5'2" CMP sing 78 n n C4' O4' CMP sing 79 n n C4' C3' CMP sing 80 n n C4' H4' CMP sing 81 n n O4' C1' CMP sing 82 n n C3' O3' CMP sing 83 n n C3' C2' CMP sing 84 n n C3' H3' CMP sing 85 n n C2' O2' CMP sing 86 n n C2' C1' CMP sing 87 n n C2' H2' CMP sing 88 n n O2' HO2' CMP sing 89 n n C1' N9 CMP sing 90 n n C1' H1' CMP sing 91 n n N9 C8 CMP sing 92 n y N9 C4 CMP sing 93 n y C8 N7 CMP doub 94 n y C8 H8 CMP sing 95 n n N7 C5 CMP sing 96 n y C5 C6 CMP sing 97 n y C5 C4 CMP doub 98 n y C6 N6 CMP sing 99 n n C6 N1 CMP doub 100 n y N6 HN61 CMP sing 101 n n N6 HN62 CMP sing 102 n n N1 C2 CMP sing 103 n y C2 N3 CMP doub 104 n y C2 H2 CMP sing 105 n n N3 C4 CMP sing 106 n y # _atom_sites.entry_id 3OGJ _atom_sites.fract_transf_matrix[1][1] 0.015978 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015978 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005012 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 CMP A 1 250 250 CMP CMP . F 2 CMP B 1 250 250 CMP CMP . G 3 PO4 C 1 250 250 PO4 PO4 . H 3 PO4 D 1 250 250 PO4 PO4 . I 4 HOH A 1 4 4 HOH HOH . I 4 HOH A 2 6 6 HOH HOH . J 4 HOH B 1 2 2 HOH HOH . J 4 HOH B 2 3 3 HOH HOH . K 4 HOH D 1 5 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P CMP . . . F 2 -1.605 40.348 -14.189 1 86.3 ? P CMP 250 B 1 HETATM 2 O O1P CMP . . . F 2 -1.549 40.911 -15.59 1 103.43 ? O1P CMP 250 B 1 HETATM 3 O O2P CMP . . . F 2 -2.826 39.472 -14.071 1 63.7 ? O2P CMP 250 B 1 HETATM 4 O O5' CMP . . . F 2 -0.255 39.499 -13.869 1 68.56 ? O5' CMP 250 B 1 HETATM 5 C C5' CMP . . . F 2 0.96 40.11 -13.446 1 61.35 ? C5' CMP 250 B 1 HETATM 6 C C4' CMP . . . F 2 0.638 41.168 -12.431 1 60.08 ? C4' CMP 250 B 1 HETATM 7 O O4' CMP . . . F 2 1.771 41.986 -12.058 1 79.82 ? O4' CMP 250 B 1 HETATM 8 C C3' CMP . . . F 2 -0.344 42.183 -12.952 1 69.41 ? C3' CMP 250 B 1 HETATM 9 O O3' CMP . . . F 2 -1.608 41.575 -13.128 1 80.96 ? O3' CMP 250 B 1 HETATM 10 C C2' CMP . . . F 2 -0.222 43.289 -11.915 1 87.42 ? C2' CMP 250 B 1 HETATM 11 O O2' CMP . . . F 2 -0.899 42.942 -10.72 1 101.53 ? O2' CMP 250 B 1 HETATM 12 C C1' CMP . . . F 2 1.291 43.255 -11.656 1 89.71 ? C1' CMP 250 B 1 HETATM 13 N N9 CMP . . . F 2 2.004 44.275 -12.444 1 119.56 ? N9 CMP 250 B 1 HETATM 14 C C8 CMP . . . F 2 2.18 44.254 -13.784 1 122.44 ? C8 CMP 250 B 1 HETATM 15 N N7 CMP . . . F 2 2.878 45.338 -14.207 1 122.91 ? N7 CMP 250 B 1 HETATM 16 C C5 CMP . . . F 2 3.164 46.072 -13.113 1 140.02 ? C5 CMP 250 B 1 HETATM 17 C C6 CMP . . . F 2 3.877 47.342 -12.836 0 156.25 ? C6 CMP 250 B 1 HETATM 18 N N6 CMP . . . F 2 4.437 48.054 -13.844 0 161.03 ? N6 CMP 250 B 1 HETATM 19 N N1 CMP . . . F 2 3.947 47.762 -11.549 0 156.97 ? N1 CMP 250 B 1 HETATM 20 C C2 CMP . . . F 2 3.392 47.062 -10.542 0 147.88 ? C2 CMP 250 B 1 HETATM 21 N N3 CMP . . . F 2 2.732 45.903 -10.72 0 139.15 ? N3 CMP 250 B 1 HETATM 22 C C4 CMP . . . F 2 2.588 45.368 -11.955 0 132.18 ? C4 CMP 250 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 22 #