data_3OGK # _model_server_result.job_id rOy4dE-1FovCmgFyvjdiIw _model_server_result.datetime_utc '2024-12-22 01:57:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ogk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"HA","auth_seq_id":1100}' # _entry.id 3OGK # _exptl.entry_id 3OGK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 321.411 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1S,2S)-2-ethyl-1-({[(3aS,4S,6R,7aS)-6-ethyl-1-oxooctahydro-1H-inden-4-yl]carbonyl}amino)cyclopropanecarboxylic acid' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.49 _cell.angle_gamma 90 _cell.entry_id 3OGK _cell.length_a 121.847 _cell.length_b 221.455 _cell.length_c 148.474 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OGK _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 23-meric _pdbx_struct_assembly.oligomeric_count 23 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 X N N ? 4 CA N N ? 4 HA N N ? 4 MA N N ? 4 RA N N ? 4 WA N N ? 4 BB N N ? 4 GB N N # _chem_comp.formula 'C18 H27 N O4' _chem_comp.formula_weight 321.411 _chem_comp.id OGK _chem_comp.mon_nstd_flag . _chem_comp.name '(1S,2S)-2-ethyl-1-({[(3aS,4S,6R,7aS)-6-ethyl-1-oxooctahydro-1H-inden-4-yl]carbonyl}amino)cyclopropanecarboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Coronatine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 H01 OGK sing 235 n n C01 H01A OGK sing 236 n n C02 C01 OGK sing 237 n n C02 H02 OGK sing 238 n n C03 C02 OGK sing 239 n n C03 C23 OGK sing 240 n n C03 H03 OGK sing 241 n n C04 C03 OGK sing 242 n n C04 H04 OGK sing 243 n n C04 H04A OGK sing 244 n n C05 C04 OGK sing 245 n n C05 H05 OGK sing 246 n n C06 C05 OGK sing 247 n n O07 C06 OGK doub 248 n n N08 C06 OGK sing 249 n n N08 HN08 OGK sing 250 n n C09 N08 OGK sing 251 n n C09 C14 OGK sing 252 n n C09 C13 OGK sing 253 n n C10 C09 OGK sing 254 n n O11 C10 OGK doub 255 n n O12 C10 OGK sing 256 n n O12 HO12 OGK sing 257 n n C13 H13 OGK sing 258 n n C13 H13A OGK sing 259 n n C14 C13 OGK sing 260 n n C14 H14 OGK sing 261 n n C15 C14 OGK sing 262 n n C15 C16 OGK sing 263 n n C15 H15 OGK sing 264 n n C15 H15A OGK sing 265 n n C16 H16 OGK sing 266 n n C16 H16A OGK sing 267 n n C16 H16B OGK sing 268 n n C17 C05 OGK sing 269 n n C17 C22 OGK sing 270 n n C17 C18 OGK sing 271 n n C17 H17 OGK sing 272 n n C18 C19 OGK sing 273 n n C18 H18 OGK sing 274 n n C18 H18A OGK sing 275 n n C19 H19 OGK sing 276 n n C19 H19A OGK sing 277 n n C20 C19 OGK sing 278 n n C20 O21 OGK doub 279 n n C22 C20 OGK sing 280 n n C22 C23 OGK sing 281 n n C22 H22 OGK sing 282 n n C23 H23 OGK sing 283 n n C23 H23A OGK sing 284 n n C01 H26 OGK sing 285 n n C02 H27 OGK sing 286 n n # _atom_sites.entry_id 3OGK _atom_sites.fract_transf_matrix[1][1] 0.008207 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002121 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004516 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006956 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code X 4 OGK B 1 1100 1100 OGK OGK . Y 5 PO4 B 1 1101 1101 PO4 PO4 . Z 5 PO4 B 1 1102 1102 PO4 PO4 . AA 5 PO4 B 1 1103 1103 PO4 PO4 . BA 5 PO4 B 1 1104 1104 PO4 PO4 . CA 4 OGK D 1 1100 1100 OGK OGK . DA 5 PO4 D 1 1101 1101 PO4 PO4 . EA 5 PO4 D 1 1102 1102 PO4 PO4 . FA 5 PO4 D 1 1103 1103 PO4 PO4 . GA 5 PO4 D 1 1104 1104 PO4 PO4 . HA 4 OGK F 1 1100 1100 OGK OGK . IA 5 PO4 F 1 1101 1101 PO4 PO4 . JA 5 PO4 F 1 1102 1102 PO4 PO4 . KA 5 PO4 F 1 1103 1103 PO4 PO4 . LA 5 PO4 F 1 1104 1104 PO4 PO4 . MA 4 OGK H 1 1100 1100 OGK OGK . NA 5 PO4 H 1 1101 1101 PO4 PO4 . OA 5 PO4 H 1 1102 1102 PO4 PO4 . PA 5 PO4 H 1 1103 1103 PO4 PO4 . QA 5 PO4 H 1 1104 1104 PO4 PO4 . RA 4 OGK J 1 1100 1100 OGK OGK . SA 5 PO4 J 1 1101 1101 PO4 PO4 . TA 5 PO4 J 1 1102 1102 PO4 PO4 . UA 5 PO4 J 1 1103 1103 PO4 PO4 . VA 5 PO4 J 1 1104 1104 PO4 PO4 . WA 4 OGK L 1 1100 1100 OGK OGK . XA 5 PO4 L 1 1101 1101 PO4 PO4 . YA 5 PO4 L 1 1102 1102 PO4 PO4 . ZA 5 PO4 L 1 1103 1103 PO4 PO4 . AB 5 PO4 L 1 1104 1104 PO4 PO4 . BB 4 OGK N 1 1100 1100 OGK OGK . CB 5 PO4 N 1 1101 1101 PO4 PO4 . DB 5 PO4 N 1 1102 1102 PO4 PO4 . EB 5 PO4 N 1 1103 1103 PO4 PO4 . FB 5 PO4 N 1 1104 1104 PO4 PO4 . GB 4 OGK P 1 1100 1100 OGK OGK . HB 5 PO4 P 1 1101 1101 PO4 PO4 . IB 5 PO4 P 1 1102 1102 PO4 PO4 . JB 5 PO4 P 1 1103 1103 PO4 PO4 . KB 5 PO4 P 1 1104 1104 PO4 PO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 OGK . . . HA 4 -37.437 14.719 64.009 1 70.26 ? C01 OGK 1100 F 1 HETATM 2 C C02 OGK . . . HA 4 -38.345 15.743 63.312 1 41.07 ? C02 OGK 1100 F 1 HETATM 3 C C03 OGK . . . HA 4 -37.884 16.365 61.973 1 31.97 ? C03 OGK 1100 F 1 HETATM 4 C C04 OGK . . . HA 4 -39.118 16.56 61.121 1 41.87 ? C04 OGK 1100 F 1 HETATM 5 C C05 OGK . . . HA 4 -39.593 17.956 60.846 1 35.29 ? C05 OGK 1100 F 1 HETATM 6 C C06 OGK . . . HA 4 -40.969 18.116 60.171 1 37.26 ? C06 OGK 1100 F 1 HETATM 7 O O07 OGK . . . HA 4 -41.621 17.148 59.978 1 43.77 ? O07 OGK 1100 F 1 HETATM 8 N N08 OGK . . . HA 4 -41.257 19.375 59.449 1 39.21 ? N08 OGK 1100 F 1 HETATM 9 C C09 OGK . . . HA 4 -42.614 19.677 58.887 1 50.17 ? C09 OGK 1100 F 1 HETATM 10 C C10 OGK . . . HA 4 -42.84 19.249 57.836 1 48.82 ? C10 OGK 1100 F 1 HETATM 11 O O11 OGK . . . HA 4 -41.952 19.193 57.04 1 49.67 ? O11 OGK 1100 F 1 HETATM 12 O O12 OGK . . . HA 4 -44.014 18.498 57.526 1 32.38 ? O12 OGK 1100 F 1 HETATM 13 C C13 OGK . . . HA 4 -43.539 19.764 59.767 1 45.19 ? C13 OGK 1100 F 1 HETATM 14 C C14 OGK . . . HA 4 -42.966 20.877 59.36 1 38.49 ? C14 OGK 1100 F 1 HETATM 15 C C15 OGK . . . HA 4 -43.466 21.52 58.048 1 45.62 ? C15 OGK 1100 F 1 HETATM 16 C C16 OGK . . . HA 4 -44.122 22.894 58.209 1 41.11 ? C16 OGK 1100 F 1 HETATM 17 C C17 OGK . . . HA 4 -38.531 19.032 60.544 1 36.66 ? C17 OGK 1100 F 1 HETATM 18 C C18 OGK . . . HA 4 -39.032 20.102 61.349 1 41.32 ? C18 OGK 1100 F 1 HETATM 19 C C19 OGK . . . HA 4 -37.831 21.021 61.564 1 23.21 ? C19 OGK 1100 F 1 HETATM 20 C C20 OGK . . . HA 4 -36.676 20.045 61.599 1 43.05 ? C20 OGK 1100 F 1 HETATM 21 O O21 OGK . . . HA 4 -35.533 20.352 61.684 1 63.99 ? O21 OGK 1100 F 1 HETATM 22 C C22 OGK . . . HA 4 -37.165 18.714 61.093 1 29.28 ? C22 OGK 1100 F 1 HETATM 23 C C23 OGK . . . HA 4 -37.122 17.654 62.24 1 26.06 ? C23 OGK 1100 F 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 74 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #