data_3OGL
#
_model_server_result.job_id            vCNDkXuDMc2HQGMTULjN2g 
_model_server_result.datetime_utc      '2025-03-06 08:16:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ogl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"BB","auth_seq_id":1100}' 
#
_entry.id    3OGL 
#
_exptl.entry_id    3OGL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              323.427 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-({(1R,2S)-3-oxo-2-[(2Z)-pent-2-en-1-yl]cyclopentyl}acetyl)-L-isoleucine 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          104.52 
_cell.angle_gamma         90 
_cell.entry_id            3OGL 
_cell.length_a            122.354 
_cell.length_b            220.825 
_cell.length_c            148.674 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3OGL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
PISA trimeric 3 author_and_software_defined_assembly 3 
PISA dimeric 2 author_and_software_defined_assembly 4 
PISA trimeric 3 author_and_software_defined_assembly 5 
PISA trimeric 3 author_and_software_defined_assembly 6 
PISA trimeric 3 author_and_software_defined_assembly 7 
PISA trimeric 3 author_and_software_defined_assembly 8 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,X,Y,Z,AA,BA 1 1 
D,E,F,CA,DA,EA,FA,GA 2 1 
G,H,I,HA,IA,JA,KA,LA 3 1 
J,K,MA,NA,OA,PA,QA 4 1 
L,M,N,RA,SA,TA,UA,VA 5 1 
O,P,Q,WA,XA,YA,ZA,AB 6 1 
R,S,T,BB,CB,DB,EB,FB 7 1 
U,V,W,GB,HB,IB,JB,KB 8 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 X N N 
? 4 CA N N 
? 4 HA N N 
? 4 MA N N 
? 4 RA N N 
? 4 WA N N 
? 4 BB N N 
? 4 GB N N 
#
_chem_comp.formula           'C18 H29 N O4' 
_chem_comp.formula_weight    323.427 
_chem_comp.id                7JA 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              N-({(1R,2S)-3-oxo-2-[(2Z)-pent-2-en-1-yl]cyclopentyl}acetyl)-L-isoleucine 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C OXT 7JA sing 1 n n 
N CA 7JA sing 2 n n 
N HN 7JA sing 3 n n 
O C 7JA doub 4 n n 
CA C 7JA sing 5 n n 
CA CB 7JA sing 6 n n 
CA HA 7JA sing 7 n n 
CB CG1 7JA sing 8 n n 
CB CG2 7JA sing 9 n n 
CB HB 7JA sing 10 n n 
C01 C02 7JA sing 11 n n 
C01 H01 7JA sing 12 n n 
C01 H01A 7JA sing 13 n n 
C02 C03 7JA sing 14 n n 
C02 H02 7JA sing 15 n n 
C03 C04 7JA doub 16 n n 
C03 H03 7JA sing 17 n n 
C04 C05 7JA sing 18 z n 
C04 H04 7JA sing 19 n n 
C05 C06 7JA sing 20 n n 
C05 H05 7JA sing 21 n n 
C05 H05A 7JA sing 22 n n 
C06 C11 7JA sing 23 n n 
C06 C07 7JA sing 24 n n 
C06 H06 7JA sing 25 n n 
C07 O08 7JA doub 26 n n 
C07 C09 7JA sing 27 n n 
C09 H09 7JA sing 28 n n 
C09 H09A 7JA sing 29 n n 
C10 C09 7JA sing 30 n n 
C10 H10 7JA sing 31 n n 
C10 H10A 7JA sing 32 n n 
C11 C10 7JA sing 33 n n 
C11 H11 7JA sing 34 n n 
C12 C11 7JA sing 35 n n 
C12 C13 7JA sing 36 n n 
C12 H12 7JA sing 37 n n 
C12 H12A 7JA sing 38 n n 
C13 N 7JA sing 39 n n 
O14 C13 7JA doub 40 n n 
CD1 HD1 7JA sing 41 n n 
CD1 HD1A 7JA sing 42 n n 
CG1 CD1 7JA sing 43 n n 
CG1 HG1 7JA sing 44 n n 
CG2 HG2 7JA sing 45 n n 
CG2 HG2A 7JA sing 46 n n 
CG2 HG2B 7JA sing 47 n n 
OXT HOXT 7JA sing 48 n n 
C01 H26 7JA sing 49 n n 
C02 H27 7JA sing 50 n n 
CD1 H28 7JA sing 51 n n 
CG1 H29 7JA sing 52 n n 
#
_atom_sites.entry_id                     3OGL 
_atom_sites.fract_transf_matrix[1][1]    0.008173 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002117 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004528 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006948 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
X 4 7JA B 1 1100 1100 7JA 7JA . 
Y 5 PO4 B 1 1101 1101 PO4 PO4 . 
Z 5 PO4 B 1 1102 1102 PO4 PO4 . 
AA 5 PO4 B 1 1103 1103 PO4 PO4 . 
BA 5 PO4 B 1 1104 1104 PO4 PO4 . 
CA 4 7JA D 1 1100 1100 7JA 7JA . 
DA 5 PO4 D 1 1101 1101 PO4 PO4 . 
EA 5 PO4 D 1 1102 1102 PO4 PO4 . 
FA 5 PO4 D 1 1103 1103 PO4 PO4 . 
GA 5 PO4 D 1 1104 1104 PO4 PO4 . 
HA 4 7JA F 1 1100 1100 7JA 7JA . 
IA 5 PO4 F 1 1101 1101 PO4 PO4 . 
JA 5 PO4 F 1 1102 1102 PO4 PO4 . 
KA 5 PO4 F 1 1103 1103 PO4 PO4 . 
LA 5 PO4 F 1 1104 1104 PO4 PO4 . 
MA 4 7JA H 1 1100 1100 7JA 7JA . 
NA 5 PO4 H 1 1101 1101 PO4 PO4 . 
OA 5 PO4 H 1 1102 1102 PO4 PO4 . 
PA 5 PO4 H 1 1103 1103 PO4 PO4 . 
QA 5 PO4 H 1 1104 1104 PO4 PO4 . 
RA 4 7JA J 1 1100 1100 7JA 7JA . 
SA 5 PO4 J 1 1101 1101 PO4 PO4 . 
TA 5 PO4 J 1 1102 1102 PO4 PO4 . 
UA 5 PO4 J 1 1103 1103 PO4 PO4 . 
VA 5 PO4 J 1 1104 1104 PO4 PO4 . 
WA 4 7JA L 1 1100 1100 7JA 7JA . 
XA 5 PO4 L 1 1101 1101 PO4 PO4 . 
YA 5 PO4 L 1 1102 1102 PO4 PO4 . 
ZA 5 PO4 L 1 1103 1103 PO4 PO4 . 
AB 5 PO4 L 1 1104 1104 PO4 PO4 . 
BB 4 7JA N 1 1100 1100 7JA 7JA . 
CB 5 PO4 N 1 1101 1101 PO4 PO4 . 
DB 5 PO4 N 1 1102 1102 PO4 PO4 . 
EB 5 PO4 N 1 1103 1103 PO4 PO4 . 
FB 5 PO4 N 1 1104 1104 PO4 PO4 . 
GB 4 7JA P 1 1100 1100 7JA 7JA . 
HB 5 PO4 P 1 1101 1101 PO4 PO4 . 
IB 5 PO4 P 1 1102 1102 PO4 PO4 . 
JB 5 PO4 P 1 1103 1103 PO4 PO4 . 
KB 5 PO4 P 1 1104 1104 PO4 PO4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C 7JA . . . BB 4 23.771 -29.353 -29.952 1 74.44 ? C 7JA 1100 N 1 
HETATM 2 N N 7JA . . . BB 4 25.032 -27.633 -31.254 1 53.06 ? N 7JA 1100 N 1 
HETATM 3 O O 7JA . . . BB 4 23.274 -30.682 -29.85 1 54.6 ? O 7JA 1100 N 1 
HETATM 4 C CA 7JA . . . BB 4 24.929 -29.04 -30.96 1 63.08 ? CA 7JA 1100 N 1 
HETATM 5 C CB 7JA . . . BB 4 26.269 -29.212 -30.235 1 67.41 ? CB 7JA 1100 N 1 
HETATM 6 C C01 7JA . . . BB 4 22.281 -21.459 -35.745 1 68.55 ? C01 7JA 1100 N 1 
HETATM 7 C C02 7JA . . . BB 4 22.068 -21.785 -34.268 1 86.96 ? C02 7JA 1100 N 1 
HETATM 8 C C03 7JA . . . BB 4 22.101 -23.25 -33.853 1 60.07 ? C03 7JA 1100 N 1 
HETATM 9 C C04 7JA . . . BB 4 23.235 -23.751 -33.42 1 61.01 ? C04 7JA 1100 N 1 
HETATM 10 C C05 7JA . . . BB 4 24.448 -22.917 -32.984 1 54.02 ? C05 7JA 1100 N 1 
HETATM 11 C C06 7JA . . . BB 4 25.044 -23.056 -31.564 1 57.29 ? C06 7JA 1100 N 1 
HETATM 12 C C07 7JA . . . BB 4 26.503 -22.554 -31.521 1 65.73 ? C07 7JA 1100 N 1 
HETATM 13 O O08 7JA . . . BB 4 26.873 -21.424 -31.605 1 65.92 ? O08 7JA 1100 N 1 
HETATM 14 C C09 7JA . . . BB 4 27.442 -23.782 -31.417 1 49.94 ? C09 7JA 1100 N 1 
HETATM 15 C C10 7JA . . . BB 4 26.513 -24.998 -31.603 1 54.68 ? C10 7JA 1100 N 1 
HETATM 16 C C11 7JA . . . BB 4 25.153 -24.517 -31.11 1 50.49 ? C11 7JA 1100 N 1 
HETATM 17 C C12 7JA . . . BB 4 24.08 -25.373 -31.778 1 50.28 ? C12 7JA 1100 N 1 
HETATM 18 C C13 7JA . . . BB 4 23.867 -26.804 -31.35 1 57.98 ? C13 7JA 1100 N 1 
HETATM 19 O O14 7JA . . . BB 4 22.797 -27.276 -31.487 1 66.71 ? O14 7JA 1100 N 1 
HETATM 20 C CD1 7JA . . . BB 4 28.155 -30.959 -29.814 1 67.14 ? CD1 7JA 1100 N 1 
HETATM 21 C CG1 7JA . . . BB 4 26.735 -30.679 -30.298 1 73.07 ? CG1 7JA 1100 N 1 
HETATM 22 C CG2 7JA . . . BB 4 26.023 -28.796 -28.783 1 70.45 ? CG2 7JA 1100 N 1 
HETATM 23 O OXT 7JA . . . BB 4 23.407 -28.523 -29.158 1 66.79 ? OXT 7JA 1100 N 1 
#
_model_server_stats.io_time_ms              74 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    47 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           23 
#