data_3OGQ # _model_server_result.job_id 7KwFGt1eUWU6JcUFCTdzYg _model_server_result.datetime_utc '2024-11-22 04:01:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ogq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":204}' # _entry.id 3OGQ # _exptl.entry_id 3OGQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3OGQ _cell.length_a 81.79 _cell.length_b 81.79 _cell.length_c 33.94 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OGQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 180 n n S C1 DMS sing 181 n n S C2 DMS sing 182 n n C1 H11 DMS sing 183 n n C1 H12 DMS sing 184 n n C1 H13 DMS sing 185 n n C2 H21 DMS sing 186 n n C2 H22 DMS sing 187 n n C2 H23 DMS sing 188 n n # _atom_sites.entry_id 3OGQ _atom_sites.fract_transf_matrix[1][1] 0.012226 _atom_sites.fract_transf_matrix[1][2] 0.007059 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014118 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029464 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AB1 A 1 200 200 AB1 AB1 . D 3 DMS A 1 204 204 DMS DMS . E 3 DMS B 1 203 203 DMS DMS . F 4 HOH A 1 400 400 HOH HOH . F 4 HOH A 2 401 401 HOH HOH . F 4 HOH A 3 405 405 HOH HOH . F 4 HOH A 4 406 406 HOH HOH . F 4 HOH A 5 407 407 HOH HOH . F 4 HOH A 6 408 408 HOH HOH . F 4 HOH A 7 412 412 HOH HOH . F 4 HOH A 8 413 413 HOH HOH . F 4 HOH A 9 415 415 HOH HOH . F 4 HOH A 10 416 416 HOH HOH . F 4 HOH A 11 417 417 HOH HOH . F 4 HOH A 12 418 418 HOH HOH . F 4 HOH A 13 420 420 HOH HOH . F 4 HOH A 14 421 421 HOH HOH . F 4 HOH A 15 424 424 HOH HOH . F 4 HOH A 16 425 425 HOH HOH . F 4 HOH A 17 429 429 HOH HOH . F 4 HOH A 18 431 431 HOH HOH . F 4 HOH A 19 432 432 HOH HOH . F 4 HOH A 20 435 435 HOH HOH . F 4 HOH A 21 436 436 HOH HOH . F 4 HOH A 22 437 437 HOH HOH . F 4 HOH A 23 438 438 HOH HOH . F 4 HOH A 24 442 442 HOH HOH . F 4 HOH A 25 443 443 HOH HOH . F 4 HOH A 26 445 445 HOH HOH . F 4 HOH A 27 446 446 HOH HOH . F 4 HOH A 28 447 447 HOH HOH . F 4 HOH A 29 448 448 HOH HOH . F 4 HOH A 30 450 450 HOH HOH . F 4 HOH A 31 452 452 HOH HOH . F 4 HOH A 32 455 455 HOH HOH . F 4 HOH A 33 456 456 HOH HOH . F 4 HOH A 34 457 457 HOH HOH . F 4 HOH A 35 459 459 HOH HOH . F 4 HOH A 36 461 461 HOH HOH . F 4 HOH A 37 462 462 HOH HOH . F 4 HOH A 38 468 468 HOH HOH . F 4 HOH A 39 469 469 HOH HOH . F 4 HOH A 40 470 470 HOH HOH . F 4 HOH A 41 471 471 HOH HOH . F 4 HOH A 42 472 472 HOH HOH . F 4 HOH A 43 474 474 HOH HOH . F 4 HOH A 44 477 477 HOH HOH . F 4 HOH A 45 479 479 HOH HOH . F 4 HOH A 46 480 480 HOH HOH . F 4 HOH A 47 482 482 HOH HOH . F 4 HOH A 48 483 483 HOH HOH . F 4 HOH A 49 484 484 HOH HOH . F 4 HOH A 50 488 488 HOH HOH . F 4 HOH A 51 489 489 HOH HOH . F 4 HOH A 52 490 490 HOH HOH . F 4 HOH A 53 492 492 HOH HOH . F 4 HOH A 54 497 497 HOH HOH . F 4 HOH A 55 498 498 HOH HOH . F 4 HOH A 56 501 501 HOH HOH . F 4 HOH A 57 503 503 HOH HOH . F 4 HOH A 58 505 505 HOH HOH . F 4 HOH A 59 508 508 HOH HOH . F 4 HOH A 60 510 510 HOH HOH . F 4 HOH A 61 511 511 HOH HOH . F 4 HOH A 62 512 512 HOH HOH . F 4 HOH A 63 513 513 HOH HOH . F 4 HOH A 64 514 514 HOH HOH . F 4 HOH A 65 515 515 HOH HOH . F 4 HOH A 66 520 520 HOH HOH . F 4 HOH A 67 523 523 HOH HOH . F 4 HOH A 68 525 525 HOH HOH . F 4 HOH A 69 526 526 HOH HOH . F 4 HOH A 70 527 527 HOH HOH . F 4 HOH A 71 528 528 HOH HOH . F 4 HOH A 72 529 529 HOH HOH . F 4 HOH A 73 530 530 HOH HOH . F 4 HOH A 74 531 531 HOH HOH . F 4 HOH A 75 532 532 HOH HOH . F 4 HOH A 76 533 533 HOH HOH . F 4 HOH A 77 534 534 HOH HOH . F 4 HOH A 78 535 535 HOH HOH . F 4 HOH A 79 536 536 HOH HOH . F 4 HOH A 80 537 537 HOH HOH . F 4 HOH A 81 539 539 HOH HOH . F 4 HOH A 82 540 540 HOH HOH . F 4 HOH A 83 541 541 HOH HOH . F 4 HOH A 84 543 543 HOH HOH . G 4 HOH B 1 202 202 HOH HOH . G 4 HOH B 2 402 402 HOH HOH . G 4 HOH B 3 403 403 HOH HOH . G 4 HOH B 4 404 404 HOH HOH . G 4 HOH B 5 409 409 HOH HOH . G 4 HOH B 6 410 410 HOH HOH . G 4 HOH B 7 411 411 HOH HOH . G 4 HOH B 8 414 414 HOH HOH . G 4 HOH B 9 419 419 HOH HOH . G 4 HOH B 10 422 422 HOH HOH . G 4 HOH B 11 423 423 HOH HOH . G 4 HOH B 12 426 426 HOH HOH . G 4 HOH B 13 427 427 HOH HOH . G 4 HOH B 14 428 428 HOH HOH . G 4 HOH B 15 430 430 HOH HOH . G 4 HOH B 16 433 433 HOH HOH . G 4 HOH B 17 434 434 HOH HOH . G 4 HOH B 18 439 439 HOH HOH . G 4 HOH B 19 440 440 HOH HOH . G 4 HOH B 20 441 441 HOH HOH . G 4 HOH B 21 444 444 HOH HOH . G 4 HOH B 22 449 449 HOH HOH . G 4 HOH B 23 451 451 HOH HOH . G 4 HOH B 24 453 453 HOH HOH . G 4 HOH B 25 454 454 HOH HOH . G 4 HOH B 26 458 458 HOH HOH . G 4 HOH B 27 460 460 HOH HOH . G 4 HOH B 28 463 463 HOH HOH . G 4 HOH B 29 464 464 HOH HOH . G 4 HOH B 30 465 465 HOH HOH . G 4 HOH B 31 466 466 HOH HOH . G 4 HOH B 32 467 467 HOH HOH . G 4 HOH B 33 473 473 HOH HOH . G 4 HOH B 34 475 475 HOH HOH . G 4 HOH B 35 476 476 HOH HOH . G 4 HOH B 36 478 478 HOH HOH . G 4 HOH B 37 481 481 HOH HOH . G 4 HOH B 38 485 485 HOH HOH . G 4 HOH B 39 486 486 HOH HOH . G 4 HOH B 40 487 487 HOH HOH . G 4 HOH B 41 491 491 HOH HOH . G 4 HOH B 42 493 493 HOH HOH . G 4 HOH B 43 494 494 HOH HOH . G 4 HOH B 44 495 495 HOH HOH . G 4 HOH B 45 496 496 HOH HOH . G 4 HOH B 46 499 499 HOH HOH . G 4 HOH B 47 500 500 HOH HOH . G 4 HOH B 48 502 502 HOH HOH . G 4 HOH B 49 504 504 HOH HOH . G 4 HOH B 50 506 506 HOH HOH . G 4 HOH B 51 507 507 HOH HOH . G 4 HOH B 52 509 509 HOH HOH . G 4 HOH B 53 516 516 HOH HOH . G 4 HOH B 54 517 517 HOH HOH . G 4 HOH B 55 518 518 HOH HOH . G 4 HOH B 56 519 519 HOH HOH . G 4 HOH B 57 521 521 HOH HOH . G 4 HOH B 58 522 522 HOH HOH . G 4 HOH B 59 524 524 HOH HOH . G 4 HOH B 60 538 538 HOH HOH . G 4 HOH B 61 542 542 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . D 3 1.76 8.464 -24.208 1 38.41 ? S DMS 204 A 1 HETATM 2 O O DMS . . . D 3 0.793 9.564 -25.065 1 37.24 ? O DMS 204 A 1 HETATM 3 C C1 DMS . . . D 3 3.464 8.895 -24.55 1 37.25 ? C1 DMS 204 A 1 HETATM 4 C C2 DMS . . . D 3 1.651 8.834 -22.461 1 37.39 ? C2 DMS 204 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #