data_3OHL # _model_server_result.job_id mJxGtYclIOuKqvli8PDw4g _model_server_result.datetime_utc '2024-12-26 16:04:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ohl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":3}' # _entry.id 3OHL # _exptl.entry_id 3OHL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3OHL _cell.length_a 56.964 _cell.length_b 120.512 _cell.length_c 46.627 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OHL _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,B,C,D,E,F,G,H,I 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_455 -x-1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 -56.964 0 23.3135 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B CA CA . A CA 1 1_555 I O HOH . A HOH 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.674 ? metalc ? metalc2 B CA CA . A CA 1 1_555 A OD2 ASP 25 A ASP 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc3 B CA CA . A CA 1 1_555 A OD1 ASP 25 A ASP 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.903 ? metalc ? metalc4 B CA CA . A CA 1 1_555 A O ASP 100 A ASP 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc5 B CA CA . A CA 1 1_555 A OD1 ASP 100 A ASP 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc6 B CA CA . A CA 1 1_555 A O GLU 102 A GLU 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc7 C CA CA . A CA 2 1_555 I O HOH . A HOH 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc8 C CA CA . A CA 2 1_555 A O ASP 59 A ASP 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc9 C CA CA . A CA 2 1_555 A O GLY 91 A GLY 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc10 C CA CA . A CA 2 1_555 A O ASN 93 A ASN 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc11 C CA CA . A CA 2 1_555 A OD1 ASP 95 A ASP 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc12 C CA CA . A CA 2 1_555 I O HOH . A HOH 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? metalc ? metalc13 D CA CA . A CA 3 1_555 A OD1 ASP 76 A ASP 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc14 D CA CA . A CA 3 1_555 A O GLY 77 A GLY 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc15 D CA CA . A CA 3 1_555 A O GLY 79 A GLY 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc16 D CA CA . A CA 3 1_555 A O VAL 81 A VAL 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc17 D CA CA . A CA 3 1_555 A OD2 ASP 99 A ASP 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc18 D CA CA . A CA 3 1_555 A OE2 GLU 102 A GLU 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc19 E ZN ZN . A ZN 4 1_555 I O HOH . A HOH 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc20 E ZN ZN . A ZN 4 1_555 A NE2 HIS 69 A HIS 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc21 E ZN ZN . A ZN 4 1_555 A OD2 ASP 71 A ASP 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc22 E ZN ZN . A ZN 4 1_555 A NE2 HIS 84 A HIS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc23 E ZN ZN . A ZN 4 1_555 A ND1 HIS 97 A HIS 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc24 F ZN ZN . A ZN 5 1_555 G O OHL . A OHL 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc25 F ZN ZN . A ZN 5 1_555 G OAE OHL . A OHL 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc26 F ZN ZN . A ZN 5 1_555 A NE2 HIS 119 A HIS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc27 F ZN ZN . A ZN 5 1_555 A NE2 HIS 123 A HIS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc28 F ZN ZN . A ZN 5 1_555 A NE2 HIS 129 A HIS 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3OHL _atom_sites.fract_transf_matrix[1][1] 0.017555 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008298 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021447 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 1 1 CA CA . C 2 CA A 1 2 2 CA CA . D 2 CA A 1 3 3 CA CA . E 3 ZN A 1 4 4 ZN ZN . F 3 ZN A 1 5 5 ZN ZN . G 4 OHL A 1 6 6 OHL OHL . H 5 SO4 A 1 250 1 SO4 SO4 . I 6 HOH A 1 9 9 HOH HOH . I 6 HOH A 2 10 10 HOH HOH . I 6 HOH A 3 11 11 HOH HOH . I 6 HOH A 4 12 12 HOH HOH . I 6 HOH A 5 13 13 HOH HOH . I 6 HOH A 6 14 14 HOH HOH . I 6 HOH A 7 15 15 HOH HOH . I 6 HOH A 8 16 16 HOH HOH . I 6 HOH A 9 17 17 HOH HOH . I 6 HOH A 10 18 18 HOH HOH . I 6 HOH A 11 19 19 HOH HOH . I 6 HOH A 12 20 20 HOH HOH . I 6 HOH A 13 21 21 HOH HOH . I 6 HOH A 14 22 22 HOH HOH . I 6 HOH A 15 23 23 HOH HOH . I 6 HOH A 16 251 1 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x -14.962 _atom_site.Cartn_y 11.271 _atom_site.Cartn_z 16.65 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 47.61 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 3 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #