data_3OIF # _model_server_result.job_id -1xyv7l9MI5BoXbCKQSs6Q _model_server_result.datetime_utc '2024-11-29 21:20:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3oif # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":601}' # _entry.id 3OIF # _exptl.entry_id 3OIF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3OIF _cell.length_a 64.098 _cell.length_b 83.655 _cell.length_c 203.547 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OIF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 3OIF _atom_sites.fract_transf_matrix[1][1] 0.015601 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011954 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004913 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAD A 1 501 501 NAD NAD . F 3 TCL A 1 502 502 TCL TCL . G 2 NAD D 1 601 601 NAD NAD . H 3 TCL D 1 602 602 TCL TCL . I 4 HOH A 1 267 267 HOH HOH . I 4 HOH A 2 268 268 HOH HOH . I 4 HOH A 3 269 269 HOH HOH . I 4 HOH A 4 270 270 HOH HOH . I 4 HOH A 5 271 271 HOH HOH . I 4 HOH A 6 272 272 HOH HOH . I 4 HOH A 7 273 273 HOH HOH . I 4 HOH A 8 274 274 HOH HOH . I 4 HOH A 9 275 275 HOH HOH . I 4 HOH A 10 276 276 HOH HOH . I 4 HOH A 11 277 277 HOH HOH . I 4 HOH A 12 278 278 HOH HOH . I 4 HOH A 13 279 279 HOH HOH . I 4 HOH A 14 280 280 HOH HOH . I 4 HOH A 15 281 281 HOH HOH . I 4 HOH A 16 282 282 HOH HOH . I 4 HOH A 17 283 283 HOH HOH . I 4 HOH A 18 284 284 HOH HOH . I 4 HOH A 19 286 286 HOH HOH . I 4 HOH A 20 287 287 HOH HOH . I 4 HOH A 21 288 288 HOH HOH . I 4 HOH A 22 289 289 HOH HOH . I 4 HOH A 23 290 290 HOH HOH . I 4 HOH A 24 291 291 HOH HOH . I 4 HOH A 25 292 292 HOH HOH . I 4 HOH A 26 295 295 HOH HOH . I 4 HOH A 27 296 296 HOH HOH . I 4 HOH A 28 297 297 HOH HOH . I 4 HOH A 29 298 298 HOH HOH . I 4 HOH A 30 299 299 HOH HOH . J 4 HOH B 1 267 267 HOH HOH . J 4 HOH B 2 268 268 HOH HOH . J 4 HOH B 3 269 269 HOH HOH . J 4 HOH B 4 270 270 HOH HOH . J 4 HOH B 5 271 271 HOH HOH . J 4 HOH B 6 272 272 HOH HOH . J 4 HOH B 7 273 273 HOH HOH . J 4 HOH B 8 274 274 HOH HOH . J 4 HOH B 9 275 275 HOH HOH . J 4 HOH B 10 276 276 HOH HOH . J 4 HOH B 11 277 277 HOH HOH . J 4 HOH B 12 278 278 HOH HOH . J 4 HOH B 13 279 279 HOH HOH . J 4 HOH B 14 280 280 HOH HOH . J 4 HOH B 15 281 281 HOH HOH . J 4 HOH B 16 283 283 HOH HOH . J 4 HOH B 17 284 284 HOH HOH . J 4 HOH B 18 285 285 HOH HOH . J 4 HOH B 19 286 286 HOH HOH . J 4 HOH B 20 287 287 HOH HOH . J 4 HOH B 21 288 288 HOH HOH . J 4 HOH B 22 289 289 HOH HOH . J 4 HOH B 23 290 290 HOH HOH . J 4 HOH B 24 291 291 HOH HOH . J 4 HOH B 25 292 292 HOH HOH . J 4 HOH B 26 293 293 HOH HOH . J 4 HOH B 27 294 294 HOH HOH . J 4 HOH B 28 295 295 HOH HOH . J 4 HOH B 29 296 296 HOH HOH . J 4 HOH B 30 297 297 HOH HOH . J 4 HOH B 31 298 298 HOH HOH . J 4 HOH B 32 299 299 HOH HOH . J 4 HOH B 33 300 300 HOH HOH . J 4 HOH B 34 301 301 HOH HOH . J 4 HOH B 35 302 302 HOH HOH . J 4 HOH B 36 303 303 HOH HOH . J 4 HOH B 37 304 304 HOH HOH . J 4 HOH B 38 305 305 HOH HOH . K 4 HOH C 1 267 267 HOH HOH . K 4 HOH C 2 268 268 HOH HOH . K 4 HOH C 3 269 269 HOH HOH . K 4 HOH C 4 270 270 HOH HOH . K 4 HOH C 5 271 271 HOH HOH . K 4 HOH C 6 272 272 HOH HOH . K 4 HOH C 7 274 274 HOH HOH . K 4 HOH C 8 275 275 HOH HOH . K 4 HOH C 9 276 276 HOH HOH . K 4 HOH C 10 277 277 HOH HOH . K 4 HOH C 11 278 278 HOH HOH . K 4 HOH C 12 279 279 HOH HOH . K 4 HOH C 13 280 280 HOH HOH . K 4 HOH C 14 281 281 HOH HOH . K 4 HOH C 15 282 282 HOH HOH . K 4 HOH C 16 283 283 HOH HOH . K 4 HOH C 17 284 284 HOH HOH . K 4 HOH C 18 285 285 HOH HOH . K 4 HOH C 19 286 286 HOH HOH . K 4 HOH C 20 287 287 HOH HOH . K 4 HOH C 21 288 288 HOH HOH . K 4 HOH C 22 289 289 HOH HOH . K 4 HOH C 23 290 290 HOH HOH . K 4 HOH C 24 291 291 HOH HOH . K 4 HOH C 25 293 293 HOH HOH . K 4 HOH C 26 294 294 HOH HOH . K 4 HOH C 27 295 295 HOH HOH . K 4 HOH C 28 296 296 HOH HOH . K 4 HOH C 29 297 297 HOH HOH . K 4 HOH C 30 298 298 HOH HOH . K 4 HOH C 31 299 299 HOH HOH . K 4 HOH C 32 301 301 HOH HOH . K 4 HOH C 33 302 302 HOH HOH . K 4 HOH C 34 303 303 HOH HOH . K 4 HOH C 35 304 304 HOH HOH . L 4 HOH D 1 267 267 HOH HOH . L 4 HOH D 2 268 268 HOH HOH . L 4 HOH D 3 269 269 HOH HOH . L 4 HOH D 4 270 270 HOH HOH . L 4 HOH D 5 271 271 HOH HOH . L 4 HOH D 6 272 272 HOH HOH . L 4 HOH D 7 273 273 HOH HOH . L 4 HOH D 8 274 274 HOH HOH . L 4 HOH D 9 275 275 HOH HOH . L 4 HOH D 10 276 276 HOH HOH . L 4 HOH D 11 277 277 HOH HOH . L 4 HOH D 12 278 278 HOH HOH . L 4 HOH D 13 279 279 HOH HOH . L 4 HOH D 14 280 280 HOH HOH . L 4 HOH D 15 281 281 HOH HOH . L 4 HOH D 16 282 282 HOH HOH . L 4 HOH D 17 283 283 HOH HOH . L 4 HOH D 18 284 284 HOH HOH . L 4 HOH D 19 285 285 HOH HOH . L 4 HOH D 20 286 286 HOH HOH . L 4 HOH D 21 288 288 HOH HOH . L 4 HOH D 22 289 289 HOH HOH . L 4 HOH D 23 290 290 HOH HOH . L 4 HOH D 24 291 291 HOH HOH . L 4 HOH D 25 292 292 HOH HOH . L 4 HOH D 26 293 293 HOH HOH . L 4 HOH D 27 294 294 HOH HOH . L 4 HOH D 28 295 295 HOH HOH . L 4 HOH D 29 305 305 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . G 2 22.155 24.316 68.366 1 63.69 ? PA NAD 601 D 1 HETATM 2 O O1A NAD . . . G 2 20.898 24.551 69.122 1 65.15 ? O1A NAD 601 D 1 HETATM 3 O O2A NAD . . . G 2 21.885 23.599 67.097 1 64.91 ? O2A NAD 601 D 1 HETATM 4 O O5B NAD . . . G 2 23.188 23.559 69.363 1 61.52 ? O5B NAD 601 D 1 HETATM 5 C C5B NAD . . . G 2 23.08 23.833 70.752 1 59.15 ? C5B NAD 601 D 1 HETATM 6 C C4B NAD . . . G 2 23.329 22.558 71.533 1 57.76 ? C4B NAD 601 D 1 HETATM 7 O O4B NAD . . . G 2 23.415 22.767 72.932 1 56.44 ? O4B NAD 601 D 1 HETATM 8 C C3B NAD . . . G 2 22.216 21.561 71.308 1 58.02 ? C3B NAD 601 D 1 HETATM 9 O O3B NAD . . . G 2 22.87 20.381 70.927 1 59.76 ? O3B NAD 601 D 1 HETATM 10 C C2B NAD . . . G 2 21.626 21.321 72.67 1 57.41 ? C2B NAD 601 D 1 HETATM 11 O O2B NAD . . . G 2 21.263 19.976 72.848 1 58.53 ? O2B NAD 601 D 1 HETATM 12 C C1B NAD . . . G 2 22.829 21.63 73.533 1 55.76 ? C1B NAD 601 D 1 HETATM 13 N N9A NAD . . . G 2 22.46 21.704 74.963 1 53.6 ? N9A NAD 601 D 1 HETATM 14 C C8A NAD . . . G 2 21.674 22.618 75.631 1 52.81 ? C8A NAD 601 D 1 HETATM 15 N N7A NAD . . . G 2 21.627 22.248 76.936 1 51.41 ? N7A NAD 601 D 1 HETATM 16 C C5A NAD . . . G 2 22.365 21.118 77.099 1 51.78 ? C5A NAD 601 D 1 HETATM 17 C C6A NAD . . . G 2 22.659 20.297 78.195 1 52.06 ? C6A NAD 601 D 1 HETATM 18 N N6A NAD . . . G 2 22.27 20.625 79.424 1 51.99 ? N6A NAD 601 D 1 HETATM 19 N N1A NAD . . . G 2 23.456 19.171 78.033 1 51.17 ? N1A NAD 601 D 1 HETATM 20 C C2A NAD . . . G 2 23.962 18.857 76.789 1 51.37 ? C2A NAD 601 D 1 HETATM 21 N N3A NAD . . . G 2 23.658 19.665 75.703 1 51.44 ? N3A NAD 601 D 1 HETATM 22 C C4A NAD . . . G 2 22.882 20.769 75.861 1 51.69 ? C4A NAD 601 D 1 HETATM 23 O O3 NAD . . . G 2 22.748 25.776 68.03 1 61.96 ? O3 NAD 601 D 1 HETATM 24 P PN NAD . . . G 2 24.298 26.128 67.815 1 58.23 ? PN NAD 601 D 1 HETATM 25 O O1N NAD . . . G 2 24.274 27.566 67.49 1 58.18 ? O1N NAD 601 D 1 HETATM 26 O O2N NAD . . . G 2 24.935 25.178 66.86 1 59.03 ? O2N NAD 601 D 1 HETATM 27 O O5D NAD . . . G 2 24.888 25.919 69.294 1 56.73 ? O5D NAD 601 D 1 HETATM 28 C C5D NAD . . . G 2 26.2 25.415 69.517 1 57.87 ? C5D NAD 601 D 1 HETATM 29 C C4D NAD . . . G 2 27.166 26.413 70.17 1 56.7 ? C4D NAD 601 D 1 HETATM 30 O O4D NAD . . . G 2 27.532 27.427 69.251 1 56.48 ? O4D NAD 601 D 1 HETATM 31 C C3D NAD . . . G 2 26.582 27.151 71.363 1 56.86 ? C3D NAD 601 D 1 HETATM 32 O O3D NAD . . . G 2 27.508 27.104 72.423 1 57.66 ? O3D NAD 601 D 1 HETATM 33 C C2D NAD . . . G 2 26.363 28.571 70.847 1 55.83 ? C2D NAD 601 D 1 HETATM 34 O O2D NAD . . . G 2 26.354 29.545 71.866 1 57.84 ? O2D NAD 601 D 1 HETATM 35 C C1D NAD . . . G 2 27.528 28.696 69.892 1 55.48 ? C1D NAD 601 D 1 HETATM 36 N N1N NAD . . . G 2 27.514 29.826 68.926 1 54.28 ? N1N NAD 601 D 1 HETATM 37 C C2N NAD . . . G 2 26.567 29.908 67.944 1 53.86 ? C2N NAD 601 D 1 HETATM 38 C C3N NAD . . . G 2 26.578 30.963 67.026 1 53.19 ? C3N NAD 601 D 1 HETATM 39 C C7N NAD . . . G 2 25.518 30.993 65.964 1 51.79 ? C7N NAD 601 D 1 HETATM 40 O O7N NAD . . . G 2 25.399 32.068 65.053 1 52.24 ? O7N NAD 601 D 1 HETATM 41 N N7N NAD . . . G 2 24.675 29.968 65.923 1 53.01 ? N7N NAD 601 D 1 HETATM 42 C C4N NAD . . . G 2 27.577 31.941 67.105 1 53.27 ? C4N NAD 601 D 1 HETATM 43 C C5N NAD . . . G 2 28.543 31.846 68.101 1 53.74 ? C5N NAD 601 D 1 HETATM 44 C C6N NAD . . . G 2 28.505 30.781 68.999 1 53.73 ? C6N NAD 601 D 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 44 #