data_3OII # _model_server_result.job_id rbxK3xDhlR6Obe9BPDKpRg _model_server_result.datetime_utc '2025-01-03 04:39:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3oii # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":253}' # _entry.id 3OII # _exptl.entry_id 3OII _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3OII _cell.length_a 45.988 _cell.length_b 84.662 _cell.length_c 112.545 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OII _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 290 n n N HN1 SAH sing 291 n n N HN2 SAH sing 292 n n CA CB SAH sing 293 n n CA C SAH sing 294 n n CA HA SAH sing 295 n n CB CG SAH sing 296 n n CB HB1 SAH sing 297 n n CB HB2 SAH sing 298 n n CG SD SAH sing 299 n n CG HG1 SAH sing 300 n n CG HG2 SAH sing 301 n n SD C5' SAH sing 302 n n C O SAH doub 303 n n C OXT SAH sing 304 n n OXT HXT SAH sing 305 n n C5' C4' SAH sing 306 n n C5' "H5'1" SAH sing 307 n n C5' "H5'2" SAH sing 308 n n C4' O4' SAH sing 309 n n C4' C3' SAH sing 310 n n C4' H4' SAH sing 311 n n O4' C1' SAH sing 312 n n C3' O3' SAH sing 313 n n C3' C2' SAH sing 314 n n C3' H3' SAH sing 315 n n O3' HO3' SAH sing 316 n n C2' O2' SAH sing 317 n n C2' C1' SAH sing 318 n n C2' H2' SAH sing 319 n n O2' HO2' SAH sing 320 n n C1' N9 SAH sing 321 n n C1' H1' SAH sing 322 n n N9 C8 SAH sing 323 n y N9 C4 SAH sing 324 n y C8 N7 SAH doub 325 n y C8 H8 SAH sing 326 n n N7 C5 SAH sing 327 n y C5 C6 SAH sing 328 n y C5 C4 SAH doub 329 n y C6 N6 SAH sing 330 n n C6 N1 SAH doub 331 n y N6 HN61 SAH sing 332 n n N6 HN62 SAH sing 333 n n N1 C2 SAH sing 334 n y C2 N3 SAH doub 335 n y C2 H2 SAH sing 336 n n N3 C4 SAH sing 337 n y # _atom_sites.entry_id 3OII _atom_sites.fract_transf_matrix[1][1] 0.021745 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011812 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008885 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAH A 1 253 1 SAH SAH . D 3 GOL A 1 254 1 GOL GOL . E 2 SAH B 1 253 2 SAH SAH . F 4 HOH A 1 255 1 HOH HOH . F 4 HOH A 2 256 2 HOH HOH . F 4 HOH A 3 257 3 HOH HOH . F 4 HOH A 4 258 4 HOH HOH . F 4 HOH A 5 259 5 HOH HOH . F 4 HOH A 6 260 6 HOH HOH . F 4 HOH A 7 261 7 HOH HOH . F 4 HOH A 8 262 8 HOH HOH . F 4 HOH A 9 263 9 HOH HOH . F 4 HOH A 10 264 10 HOH HOH . F 4 HOH A 11 265 11 HOH HOH . F 4 HOH A 12 266 12 HOH HOH . F 4 HOH A 13 267 13 HOH HOH . F 4 HOH A 14 268 14 HOH HOH . F 4 HOH A 15 269 15 HOH HOH . F 4 HOH A 16 270 16 HOH HOH . F 4 HOH A 17 271 18 HOH HOH . F 4 HOH A 18 272 19 HOH HOH . F 4 HOH A 19 273 20 HOH HOH . F 4 HOH A 20 274 21 HOH HOH . F 4 HOH A 21 275 22 HOH HOH . F 4 HOH A 22 276 23 HOH HOH . F 4 HOH A 23 277 24 HOH HOH . F 4 HOH A 24 278 25 HOH HOH . F 4 HOH A 25 279 28 HOH HOH . F 4 HOH A 26 280 29 HOH HOH . F 4 HOH A 27 281 31 HOH HOH . F 4 HOH A 28 282 35 HOH HOH . F 4 HOH A 29 283 36 HOH HOH . F 4 HOH A 30 284 37 HOH HOH . F 4 HOH A 31 285 40 HOH HOH . F 4 HOH A 32 286 42 HOH HOH . F 4 HOH A 33 287 43 HOH HOH . F 4 HOH A 34 288 44 HOH HOH . F 4 HOH A 35 289 45 HOH HOH . F 4 HOH A 36 290 46 HOH HOH . F 4 HOH A 37 291 47 HOH HOH . F 4 HOH A 38 292 48 HOH HOH . F 4 HOH A 39 293 49 HOH HOH . F 4 HOH A 40 294 53 HOH HOH . F 4 HOH A 41 295 55 HOH HOH . F 4 HOH A 42 296 60 HOH HOH . F 4 HOH A 43 297 62 HOH HOH . F 4 HOH A 44 298 63 HOH HOH . F 4 HOH A 45 299 64 HOH HOH . F 4 HOH A 46 300 67 HOH HOH . F 4 HOH A 47 301 69 HOH HOH . F 4 HOH A 48 302 70 HOH HOH . F 4 HOH A 49 303 71 HOH HOH . F 4 HOH A 50 304 72 HOH HOH . F 4 HOH A 51 305 75 HOH HOH . F 4 HOH A 52 306 77 HOH HOH . F 4 HOH A 53 307 78 HOH HOH . F 4 HOH A 54 308 79 HOH HOH . F 4 HOH A 55 309 80 HOH HOH . F 4 HOH A 56 310 81 HOH HOH . F 4 HOH A 57 311 82 HOH HOH . F 4 HOH A 58 312 83 HOH HOH . F 4 HOH A 59 313 85 HOH HOH . F 4 HOH A 60 314 88 HOH HOH . F 4 HOH A 61 315 91 HOH HOH . F 4 HOH A 62 316 92 HOH HOH . F 4 HOH A 63 317 93 HOH HOH . F 4 HOH A 64 318 95 HOH HOH . F 4 HOH A 65 319 96 HOH HOH . F 4 HOH A 66 320 97 HOH HOH . F 4 HOH A 67 321 98 HOH HOH . F 4 HOH A 68 322 100 HOH HOH . F 4 HOH A 69 323 101 HOH HOH . F 4 HOH A 70 324 102 HOH HOH . F 4 HOH A 71 325 103 HOH HOH . F 4 HOH A 72 326 104 HOH HOH . F 4 HOH A 73 327 105 HOH HOH . F 4 HOH A 74 328 106 HOH HOH . F 4 HOH A 75 329 108 HOH HOH . F 4 HOH A 76 330 110 HOH HOH . F 4 HOH A 77 331 111 HOH HOH . F 4 HOH A 78 332 112 HOH HOH . F 4 HOH A 79 333 113 HOH HOH . F 4 HOH A 80 334 114 HOH HOH . F 4 HOH A 81 335 115 HOH HOH . F 4 HOH A 82 336 116 HOH HOH . F 4 HOH A 83 337 118 HOH HOH . F 4 HOH A 84 338 119 HOH HOH . F 4 HOH A 85 339 121 HOH HOH . F 4 HOH A 86 340 122 HOH HOH . F 4 HOH A 87 341 123 HOH HOH . F 4 HOH A 88 342 125 HOH HOH . F 4 HOH A 89 343 126 HOH HOH . F 4 HOH A 90 344 127 HOH HOH . F 4 HOH A 91 345 128 HOH HOH . F 4 HOH A 92 346 129 HOH HOH . F 4 HOH A 93 347 130 HOH HOH . F 4 HOH A 94 348 131 HOH HOH . F 4 HOH A 95 349 132 HOH HOH . F 4 HOH A 96 350 133 HOH HOH . F 4 HOH A 97 351 134 HOH HOH . F 4 HOH A 98 352 136 HOH HOH . F 4 HOH A 99 353 140 HOH HOH . F 4 HOH A 100 354 141 HOH HOH . F 4 HOH A 101 355 143 HOH HOH . F 4 HOH A 102 356 144 HOH HOH . F 4 HOH A 103 357 145 HOH HOH . F 4 HOH A 104 358 146 HOH HOH . F 4 HOH A 105 359 148 HOH HOH . F 4 HOH A 106 360 149 HOH HOH . F 4 HOH A 107 361 150 HOH HOH . F 4 HOH A 108 362 151 HOH HOH . F 4 HOH A 109 363 156 HOH HOH . F 4 HOH A 110 364 158 HOH HOH . F 4 HOH A 111 365 163 HOH HOH . F 4 HOH A 112 366 165 HOH HOH . F 4 HOH A 113 367 168 HOH HOH . F 4 HOH A 114 368 169 HOH HOH . F 4 HOH A 115 369 171 HOH HOH . F 4 HOH A 116 370 172 HOH HOH . F 4 HOH A 117 371 173 HOH HOH . F 4 HOH A 118 372 174 HOH HOH . F 4 HOH A 119 373 177 HOH HOH . F 4 HOH A 120 374 179 HOH HOH . F 4 HOH A 121 375 180 HOH HOH . F 4 HOH A 122 376 181 HOH HOH . F 4 HOH A 123 377 184 HOH HOH . F 4 HOH A 124 378 186 HOH HOH . F 4 HOH A 125 379 187 HOH HOH . F 4 HOH A 126 380 189 HOH HOH . F 4 HOH A 127 381 190 HOH HOH . F 4 HOH A 128 382 191 HOH HOH . F 4 HOH A 129 383 196 HOH HOH . F 4 HOH A 130 384 197 HOH HOH . F 4 HOH A 131 385 202 HOH HOH . F 4 HOH A 132 386 206 HOH HOH . F 4 HOH A 133 387 207 HOH HOH . F 4 HOH A 134 388 208 HOH HOH . F 4 HOH A 135 389 210 HOH HOH . F 4 HOH A 136 390 211 HOH HOH . F 4 HOH A 137 391 212 HOH HOH . F 4 HOH A 138 392 214 HOH HOH . F 4 HOH A 139 393 215 HOH HOH . F 4 HOH A 140 394 216 HOH HOH . F 4 HOH A 141 395 217 HOH HOH . F 4 HOH A 142 396 218 HOH HOH . F 4 HOH A 143 397 219 HOH HOH . F 4 HOH A 144 398 220 HOH HOH . F 4 HOH A 145 399 224 HOH HOH . G 4 HOH B 1 254 17 HOH HOH . G 4 HOH B 2 255 26 HOH HOH . G 4 HOH B 3 256 27 HOH HOH . G 4 HOH B 4 257 30 HOH HOH . G 4 HOH B 5 258 32 HOH HOH . G 4 HOH B 6 259 33 HOH HOH . G 4 HOH B 7 260 34 HOH HOH . G 4 HOH B 8 261 38 HOH HOH . G 4 HOH B 9 262 39 HOH HOH . G 4 HOH B 10 263 41 HOH HOH . G 4 HOH B 11 264 50 HOH HOH . G 4 HOH B 12 265 51 HOH HOH . G 4 HOH B 13 266 52 HOH HOH . G 4 HOH B 14 267 54 HOH HOH . G 4 HOH B 15 268 56 HOH HOH . G 4 HOH B 16 269 57 HOH HOH . G 4 HOH B 17 270 58 HOH HOH . G 4 HOH B 18 271 59 HOH HOH . G 4 HOH B 19 272 61 HOH HOH . G 4 HOH B 20 273 65 HOH HOH . G 4 HOH B 21 274 66 HOH HOH . G 4 HOH B 22 275 68 HOH HOH . G 4 HOH B 23 276 73 HOH HOH . G 4 HOH B 24 277 74 HOH HOH . G 4 HOH B 25 278 76 HOH HOH . G 4 HOH B 26 279 84 HOH HOH . G 4 HOH B 27 280 86 HOH HOH . G 4 HOH B 28 281 87 HOH HOH . G 4 HOH B 29 282 89 HOH HOH . G 4 HOH B 30 283 90 HOH HOH . G 4 HOH B 31 284 94 HOH HOH . G 4 HOH B 32 285 99 HOH HOH . G 4 HOH B 33 286 107 HOH HOH . G 4 HOH B 34 287 109 HOH HOH . G 4 HOH B 35 288 117 HOH HOH . G 4 HOH B 36 289 120 HOH HOH . G 4 HOH B 37 290 124 HOH HOH . G 4 HOH B 38 291 135 HOH HOH . G 4 HOH B 39 292 137 HOH HOH . G 4 HOH B 40 293 138 HOH HOH . G 4 HOH B 41 294 139 HOH HOH . G 4 HOH B 42 295 142 HOH HOH . G 4 HOH B 43 296 147 HOH HOH . G 4 HOH B 44 297 152 HOH HOH . G 4 HOH B 45 298 153 HOH HOH . G 4 HOH B 46 299 154 HOH HOH . G 4 HOH B 47 300 155 HOH HOH . G 4 HOH B 48 301 157 HOH HOH . G 4 HOH B 49 302 159 HOH HOH . G 4 HOH B 50 303 160 HOH HOH . G 4 HOH B 51 304 161 HOH HOH . G 4 HOH B 52 305 162 HOH HOH . G 4 HOH B 53 306 164 HOH HOH . G 4 HOH B 54 307 166 HOH HOH . G 4 HOH B 55 308 167 HOH HOH . G 4 HOH B 56 309 170 HOH HOH . G 4 HOH B 57 310 175 HOH HOH . G 4 HOH B 58 311 176 HOH HOH . G 4 HOH B 59 312 178 HOH HOH . G 4 HOH B 60 313 182 HOH HOH . G 4 HOH B 61 314 183 HOH HOH . G 4 HOH B 62 315 185 HOH HOH . G 4 HOH B 63 316 188 HOH HOH . G 4 HOH B 64 317 192 HOH HOH . G 4 HOH B 65 318 193 HOH HOH . G 4 HOH B 66 319 194 HOH HOH . G 4 HOH B 67 320 195 HOH HOH . G 4 HOH B 68 321 198 HOH HOH . G 4 HOH B 69 322 199 HOH HOH . G 4 HOH B 70 323 200 HOH HOH . G 4 HOH B 71 324 201 HOH HOH . G 4 HOH B 72 325 203 HOH HOH . G 4 HOH B 73 326 204 HOH HOH . G 4 HOH B 74 327 205 HOH HOH . G 4 HOH B 75 328 209 HOH HOH . G 4 HOH B 76 329 213 HOH HOH . G 4 HOH B 77 330 221 HOH HOH . G 4 HOH B 78 331 222 HOH HOH . G 4 HOH B 79 332 223 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . E 2 2.651 -2.006 -28.591 0.66 56.61 ? N SAH 253 B 1 HETATM 2 C CA SAH . . . E 2 2.773 -2.161 -27.106 0.66 56.66 ? CA SAH 253 B 1 HETATM 3 C CB SAH . . . E 2 1.835 -3.275 -26.622 0.66 56.14 ? CB SAH 253 B 1 HETATM 4 C CG SAH . . . E 2 1.58 -3.252 -25.112 0.66 53.76 ? CG SAH 253 B 1 HETATM 5 S SD SAH . . . E 2 0.399 -2.024 -24.63 0.66 45.97 ? SD SAH 253 B 1 HETATM 6 C C SAH . . . E 2 4.216 -2.43 -26.728 0.66 57.32 ? C SAH 253 B 1 HETATM 7 O O SAH . . . E 2 4.769 -1.74 -25.864 0.66 57.43 ? O SAH 253 B 1 HETATM 8 O OXT SAH . . . E 2 4.885 -3.329 -27.254 0.66 57.49 ? OXT SAH 253 B 1 HETATM 9 C C5' SAH . . . E 2 -1.083 -2.824 -25.144 0.66 44.74 ? C5' SAH 253 B 1 HETATM 10 C C4' SAH . . . E 2 -1.944 -2.076 -26.162 0.66 41.38 ? C4' SAH 253 B 1 HETATM 11 O O4' SAH . . . E 2 -2.507 -0.853 -25.667 0.66 41.28 ? O4' SAH 253 B 1 HETATM 12 C C3' SAH . . . E 2 -1.218 -1.707 -27.429 0.66 42.8 ? C3' SAH 253 B 1 HETATM 13 O O3' SAH . . . E 2 -1.079 -2.845 -28.287 0.66 47.93 ? O3' SAH 253 B 1 HETATM 14 C C2' SAH . . . E 2 -2.155 -0.666 -28.002 0.66 42.14 ? C2' SAH 253 B 1 HETATM 15 O O2' SAH . . . E 2 -3.187 -1.325 -28.77 0.66 36.92 ? O2' SAH 253 B 1 HETATM 16 C C1' SAH . . . E 2 -2.707 0.044 -26.755 0.66 41.53 ? C1' SAH 253 B 1 HETATM 17 N N9 SAH . . . E 2 -1.899 1.252 -26.481 0.66 39.14 ? N9 SAH 253 B 1 HETATM 18 C C8 SAH . . . E 2 -0.805 1.314 -25.705 0.66 40.11 ? C8 SAH 253 B 1 HETATM 19 N N7 SAH . . . E 2 -0.281 2.566 -25.68 0.66 40.9 ? N7 SAH 253 B 1 HETATM 20 C C5 SAH . . . E 2 -1.038 3.326 -26.489 0.66 39.93 ? C5 SAH 253 B 1 HETATM 21 C C6 SAH . . . E 2 -1.046 4.754 -26.906 0.66 37.65 ? C6 SAH 253 B 1 HETATM 22 N N6 SAH . . . E 2 -0.125 5.638 -26.445 0.66 34.73 ? N6 SAH 253 B 1 HETATM 23 N N1 SAH . . . E 2 -2.029 5.141 -27.746 0.66 41.2 ? N1 SAH 253 B 1 HETATM 24 C C2 SAH . . . E 2 -2.957 4.275 -28.209 0.66 40.21 ? C2 SAH 253 B 1 HETATM 25 N N3 SAH . . . E 2 -3.002 2.971 -27.87 0.66 40.59 ? N3 SAH 253 B 1 HETATM 26 C C4 SAH . . . E 2 -2.096 2.449 -27.017 0.66 40.21 ? C4 SAH 253 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #