data_3OIV # _model_server_result.job_id '_k-oGQUy3C9KbKMxChYHLw' _model_server_result.datetime_utc '2024-11-27 05:03:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3oiv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":172}' # _entry.id 3OIV # _exptl.entry_id 3OIV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 154.251 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,3-DIHYDROXY-1,4-DITHIOBUTANE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3OIV _cell.length_a 87.883 _cell.length_b 87.883 _cell.length_c 133.057 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OIV _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA trimeric 3 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,B,C,D,E,F,G,H,I 2 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 43.9415 76.108911 0 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -43.9415 76.108911 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 17 A SER 17 1_555 D MG MG . A MG 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc2 A O PHE 28 A PHE 28 1_555 C CA CA . A CA 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc3 A OD2 ASP 30 A ASP 30 1_555 C CA CA . A CA 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc4 A OG1 THR 35 A THR 35 1_555 D MG MG . A MG 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc5 A O ARG 102 A ARG 102 1_555 F MG MG . A MG 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc6 A OD1 ASP 105 A ASP 105 1_555 F MG MG . A MG 170 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc7 A OD2 ASP 105 A ASP 105 1_555 F MG MG . A MG 170 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.705 ? metalc ? metalc8 C CA CA . A CA 167 1_555 I O HOH . A HOH 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? metalc ? metalc9 D MG MG . A MG 168 1_555 I O HOH . A HOH 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc10 D MG MG . A MG 168 1_555 I O HOH . A HOH 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc11 D MG MG . A MG 168 1_555 B O2G GNP . A GNP 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc12 D MG MG . A MG 168 1_555 B O2B GNP . A GNP 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc13 E MG MG . A MG 169 1_555 I O HOH . A HOH 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc14 E MG MG . A MG 169 1_555 I O HOH . A HOH 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc15 F MG MG . A MG 170 1_555 I O HOH . A HOH 482 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? # _chem_comp.formula 'C4 H10 O2 S2' _chem_comp.formula_weight 154.251 _chem_comp.id DTT _chem_comp.mon_nstd_flag . _chem_comp.name 2,3-DIHYDROXY-1,4-DITHIOBUTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1,4-DITHIOTHREITOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S1 C1 DTT sing 83 n n S1 HS1 DTT sing 84 n n C1 C2 DTT sing 85 n n C1 H11 DTT sing 86 n n C1 H12 DTT sing 87 n n C2 O2 DTT sing 88 n n C2 C3 DTT sing 89 n n C2 H2 DTT sing 90 n n O2 HO2 DTT sing 91 n n C3 O3 DTT sing 92 n n C3 C4 DTT sing 93 n n C3 H3 DTT sing 94 n n O3 HO3 DTT sing 95 n n C4 S4 DTT sing 96 n n C4 H41 DTT sing 97 n n C4 H42 DTT sing 98 n n S4 HS2 DTT sing 99 n n # _atom_sites.entry_id 3OIV _atom_sites.fract_transf_matrix[1][1] 0.011379 _atom_sites.fract_transf_matrix[1][2] 0.00657 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013139 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007516 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GNP A 1 201 201 GNP GNP . C 3 CA A 1 167 1 CA CA . D 4 MG A 1 168 2 MG MG . E 4 MG A 1 169 3 MG MG . F 4 MG A 1 170 4 MG MG . G 5 DTT A 1 171 1 DTT DTT . H 5 DTT A 1 172 2 DTT DTT . I 6 HOH A 1 173 173 HOH HOH . I 6 HOH A 2 174 172 HOH HOH . I 6 HOH A 3 175 175 HOH HOH . I 6 HOH A 4 176 201 HOH HOH . I 6 HOH A 5 177 177 HOH HOH . I 6 HOH A 6 178 178 HOH HOH . I 6 HOH A 7 180 180 HOH HOH . I 6 HOH A 8 181 181 HOH HOH . I 6 HOH A 9 182 182 HOH HOH . I 6 HOH A 10 184 184 HOH HOH . I 6 HOH A 11 188 188 HOH HOH . I 6 HOH A 12 191 191 HOH HOH . I 6 HOH A 13 192 192 HOH HOH . I 6 HOH A 14 195 195 HOH HOH . I 6 HOH A 15 197 197 HOH HOH . I 6 HOH A 16 198 198 HOH HOH . I 6 HOH A 17 200 200 HOH HOH . I 6 HOH A 18 203 203 HOH HOH . I 6 HOH A 19 204 204 HOH HOH . I 6 HOH A 20 206 206 HOH HOH . I 6 HOH A 21 207 207 HOH HOH . I 6 HOH A 22 208 208 HOH HOH . I 6 HOH A 23 209 209 HOH HOH . I 6 HOH A 24 210 210 HOH HOH . I 6 HOH A 25 211 211 HOH HOH . I 6 HOH A 26 212 212 HOH HOH . I 6 HOH A 27 213 213 HOH HOH . I 6 HOH A 28 214 214 HOH HOH . I 6 HOH A 29 217 217 HOH HOH . I 6 HOH A 30 218 218 HOH HOH . I 6 HOH A 31 220 220 HOH HOH . I 6 HOH A 32 221 221 HOH HOH . I 6 HOH A 33 222 222 HOH HOH . I 6 HOH A 34 224 224 HOH HOH . I 6 HOH A 35 227 227 HOH HOH . I 6 HOH A 36 228 228 HOH HOH . I 6 HOH A 37 229 229 HOH HOH . I 6 HOH A 38 231 231 HOH HOH . I 6 HOH A 39 235 235 HOH HOH . I 6 HOH A 40 237 237 HOH HOH . I 6 HOH A 41 239 239 HOH HOH . I 6 HOH A 42 240 240 HOH HOH . I 6 HOH A 43 243 243 HOH HOH . I 6 HOH A 44 245 245 HOH HOH . I 6 HOH A 45 246 246 HOH HOH . I 6 HOH A 46 247 247 HOH HOH . I 6 HOH A 47 249 249 HOH HOH . I 6 HOH A 48 251 251 HOH HOH . I 6 HOH A 49 252 252 HOH HOH . I 6 HOH A 50 253 253 HOH HOH . I 6 HOH A 51 255 255 HOH HOH . I 6 HOH A 52 256 256 HOH HOH . I 6 HOH A 53 257 257 HOH HOH . I 6 HOH A 54 258 258 HOH HOH . I 6 HOH A 55 264 264 HOH HOH . I 6 HOH A 56 265 265 HOH HOH . I 6 HOH A 57 266 266 HOH HOH . I 6 HOH A 58 267 267 HOH HOH . I 6 HOH A 59 268 268 HOH HOH . I 6 HOH A 60 271 271 HOH HOH . I 6 HOH A 61 272 272 HOH HOH . I 6 HOH A 62 273 273 HOH HOH . I 6 HOH A 63 275 275 HOH HOH . I 6 HOH A 64 276 276 HOH HOH . I 6 HOH A 65 282 282 HOH HOH . I 6 HOH A 66 283 283 HOH HOH . I 6 HOH A 67 286 286 HOH HOH . I 6 HOH A 68 287 287 HOH HOH . I 6 HOH A 69 288 288 HOH HOH . I 6 HOH A 70 289 289 HOH HOH . I 6 HOH A 71 293 293 HOH HOH . I 6 HOH A 72 296 296 HOH HOH . I 6 HOH A 73 301 301 HOH HOH . I 6 HOH A 74 305 305 HOH HOH . I 6 HOH A 75 306 306 HOH HOH . I 6 HOH A 76 307 307 HOH HOH . I 6 HOH A 77 308 308 HOH HOH . I 6 HOH A 78 400 400 HOH HOH . I 6 HOH A 79 401 401 HOH HOH . I 6 HOH A 80 403 403 HOH HOH . I 6 HOH A 81 404 404 HOH HOH . I 6 HOH A 82 405 405 HOH HOH . I 6 HOH A 83 406 406 HOH HOH . I 6 HOH A 84 407 407 HOH HOH . I 6 HOH A 85 408 408 HOH HOH . I 6 HOH A 86 409 409 HOH HOH . I 6 HOH A 87 410 410 HOH HOH . I 6 HOH A 88 411 411 HOH HOH . I 6 HOH A 89 412 412 HOH HOH . I 6 HOH A 90 414 414 HOH HOH . I 6 HOH A 91 415 415 HOH HOH . I 6 HOH A 92 416 416 HOH HOH . I 6 HOH A 93 417 417 HOH HOH . I 6 HOH A 94 418 418 HOH HOH . I 6 HOH A 95 435 435 HOH HOH . I 6 HOH A 96 437 437 HOH HOH . I 6 HOH A 97 438 438 HOH HOH . I 6 HOH A 98 439 439 HOH HOH . I 6 HOH A 99 440 440 HOH HOH . I 6 HOH A 100 441 441 HOH HOH . I 6 HOH A 101 442 442 HOH HOH . I 6 HOH A 102 443 443 HOH HOH . I 6 HOH A 103 444 444 HOH HOH . I 6 HOH A 104 445 445 HOH HOH . I 6 HOH A 105 446 446 HOH HOH . I 6 HOH A 106 447 447 HOH HOH . I 6 HOH A 107 448 448 HOH HOH . I 6 HOH A 108 449 449 HOH HOH . I 6 HOH A 109 450 450 HOH HOH . I 6 HOH A 110 451 451 HOH HOH . I 6 HOH A 111 452 452 HOH HOH . I 6 HOH A 112 453 453 HOH HOH . I 6 HOH A 113 454 454 HOH HOH . I 6 HOH A 114 455 455 HOH HOH . I 6 HOH A 115 456 456 HOH HOH . I 6 HOH A 116 457 457 HOH HOH . I 6 HOH A 117 458 458 HOH HOH . I 6 HOH A 118 459 459 HOH HOH . I 6 HOH A 119 460 460 HOH HOH . I 6 HOH A 120 461 461 HOH HOH . I 6 HOH A 121 462 462 HOH HOH . I 6 HOH A 122 463 463 HOH HOH . I 6 HOH A 123 464 464 HOH HOH . I 6 HOH A 124 465 465 HOH HOH . I 6 HOH A 125 466 466 HOH HOH . I 6 HOH A 126 467 467 HOH HOH . I 6 HOH A 127 468 468 HOH HOH . I 6 HOH A 128 469 469 HOH HOH . I 6 HOH A 129 470 470 HOH HOH . I 6 HOH A 130 471 471 HOH HOH . I 6 HOH A 131 472 472 HOH HOH . I 6 HOH A 132 473 473 HOH HOH . I 6 HOH A 133 474 474 HOH HOH . I 6 HOH A 134 475 475 HOH HOH . I 6 HOH A 135 476 476 HOH HOH . I 6 HOH A 136 477 477 HOH HOH . I 6 HOH A 137 478 478 HOH HOH . I 6 HOH A 138 479 479 HOH HOH . I 6 HOH A 139 480 480 HOH HOH . I 6 HOH A 140 481 481 HOH HOH . I 6 HOH A 141 482 482 HOH HOH . I 6 HOH A 142 483 483 HOH HOH . I 6 HOH A 143 484 484 HOH HOH . I 6 HOH A 144 485 485 HOH HOH . I 6 HOH A 145 486 486 HOH HOH . I 6 HOH A 146 487 487 HOH HOH . I 6 HOH A 147 488 488 HOH HOH . I 6 HOH A 148 489 489 HOH HOH . I 6 HOH A 149 490 490 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S1 DTT . . . H 5 -5.574 73.742 -87.801 1 58.22 ? S1 DTT 172 A 1 HETATM 2 C C1 DTT . . . H 5 -7.373 73.903 -87.709 1 41.77 ? C1 DTT 172 A 1 HETATM 3 C C2 DTT . . . H 5 -7.791 75.303 -87.297 1 39.32 ? C2 DTT 172 A 1 HETATM 4 O O2 DTT . . . H 5 -6.81 75.838 -86.438 1 52.85 ? O2 DTT 172 A 1 HETATM 5 C C3 DTT . . . H 5 -9.145 75.274 -86.598 1 37.78 ? C3 DTT 172 A 1 HETATM 6 O O3 DTT . . . H 5 -9.533 76.586 -86.252 1 55.76 ? O3 DTT 172 A 1 HETATM 7 C C4 DTT . . . H 5 -10.201 74.664 -87.506 1 36.57 ? C4 DTT 172 A 1 HETATM 8 S S4 DTT . . . H 5 -11.889 75.099 -87.024 1 57.9 ? S4 DTT 172 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 8 #