data_3OJ0
#
_model_server_result.job_id            9Z6HbdWM8BKyprwAN1QaKg 
_model_server_result.datetime_utc      '2024-12-27 00:17:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3oj0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":142}' 
#
_entry.id    3OJ0 
#
_exptl.entry_id    3OJ0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3OJ0 
_cell.length_a            92.52 
_cell.length_b            92.52 
_cell.length_c            33.47 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3OJ0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLY 30 A GLY 27 1_555 A N MSE 31 A MSE 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale2 A C MSE 31 A MSE 28 1_555 A N LEU 32 A LEU 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale3 A C LEU 100 A LEU 97 1_555 A N MSE 101 A MSE 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale4 A C MSE 101 A MSE 98 1_555 A N PRO 102 A PRO 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
covale ? covale5 A C GLU 135 A GLU 132 1_555 A N MSE 136 A MSE 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale6 A C MSE 136 A MSE 133 1_555 A N LEU 137 A LEU 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 116 n n 
C1 C2 GOL sing 117 n n 
C1 H11 GOL sing 118 n n 
C1 H12 GOL sing 119 n n 
O1 HO1 GOL sing 120 n n 
C2 O2 GOL sing 121 n n 
C2 C3 GOL sing 122 n n 
C2 H2 GOL sing 123 n n 
O2 HO2 GOL sing 124 n n 
C3 O3 GOL sing 125 n n 
C3 H31 GOL sing 126 n n 
C3 H32 GOL sing 127 n n 
O3 HO3 GOL sing 128 n n 
#
_atom_sites.entry_id                     3OJ0 
_atom_sites.fract_transf_matrix[1][1]    0.010808 
_atom_sites.fract_transf_matrix[1][2]    0.00624 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01248 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.029876 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL A 1 142 1 GOL GOL . 
C 2 GOL A 1 143 1 GOL GOL . 
D 2 GOL A 1 144 1 GOL GOL . 
E 2 GOL A 1 145 1 GOL GOL . 
F 2 GOL A 1 146 1 GOL GOL . 
G 2 GOL A 1 147 1 GOL GOL . 
H 3 SO4 A 1 148 1 SO4 SO4 . 
I 3 SO4 A 1 149 1 SO4 SO4 . 
J 3 SO4 A 1 150 1 SO4 SO4 . 
K 4 HOH A 1 151 1 HOH HOH . 
K 4 HOH A 2 152 2 HOH HOH . 
K 4 HOH A 3 153 3 HOH HOH . 
K 4 HOH A 4 154 4 HOH HOH . 
K 4 HOH A 5 155 5 HOH HOH . 
K 4 HOH A 6 156 6 HOH HOH . 
K 4 HOH A 7 157 7 HOH HOH . 
K 4 HOH A 8 158 8 HOH HOH . 
K 4 HOH A 9 159 9 HOH HOH . 
K 4 HOH A 10 160 10 HOH HOH . 
K 4 HOH A 11 161 11 HOH HOH . 
K 4 HOH A 12 162 12 HOH HOH . 
K 4 HOH A 13 163 13 HOH HOH . 
K 4 HOH A 14 164 14 HOH HOH . 
K 4 HOH A 15 165 15 HOH HOH . 
K 4 HOH A 16 166 16 HOH HOH . 
K 4 HOH A 17 167 17 HOH HOH . 
K 4 HOH A 18 168 18 HOH HOH . 
K 4 HOH A 19 169 19 HOH HOH . 
K 4 HOH A 20 170 20 HOH HOH . 
K 4 HOH A 21 171 21 HOH HOH . 
K 4 HOH A 22 172 22 HOH HOH . 
K 4 HOH A 23 173 23 HOH HOH . 
K 4 HOH A 24 174 24 HOH HOH . 
K 4 HOH A 25 175 25 HOH HOH . 
K 4 HOH A 26 176 26 HOH HOH . 
K 4 HOH A 27 177 27 HOH HOH . 
K 4 HOH A 28 178 28 HOH HOH . 
K 4 HOH A 29 179 29 HOH HOH . 
K 4 HOH A 30 180 30 HOH HOH . 
K 4 HOH A 31 181 31 HOH HOH . 
K 4 HOH A 32 182 32 HOH HOH . 
K 4 HOH A 33 183 33 HOH HOH . 
K 4 HOH A 34 184 34 HOH HOH . 
K 4 HOH A 35 185 35 HOH HOH . 
K 4 HOH A 36 186 36 HOH HOH . 
K 4 HOH A 37 187 37 HOH HOH . 
K 4 HOH A 38 188 38 HOH HOH . 
K 4 HOH A 39 189 39 HOH HOH . 
K 4 HOH A 40 190 40 HOH HOH . 
K 4 HOH A 41 191 41 HOH HOH . 
K 4 HOH A 42 192 42 HOH HOH . 
K 4 HOH A 43 193 43 HOH HOH . 
K 4 HOH A 44 194 44 HOH HOH . 
K 4 HOH A 45 195 45 HOH HOH . 
K 4 HOH A 46 196 46 HOH HOH . 
K 4 HOH A 47 197 47 HOH HOH . 
K 4 HOH A 48 198 48 HOH HOH . 
K 4 HOH A 49 199 49 HOH HOH . 
K 4 HOH A 50 200 50 HOH HOH . 
K 4 HOH A 51 201 51 HOH HOH . 
K 4 HOH A 52 202 52 HOH HOH . 
K 4 HOH A 53 203 53 HOH HOH . 
K 4 HOH A 54 204 54 HOH HOH . 
K 4 HOH A 55 205 55 HOH HOH . 
K 4 HOH A 56 206 56 HOH HOH . 
K 4 HOH A 57 207 57 HOH HOH . 
K 4 HOH A 58 208 58 HOH HOH . 
K 4 HOH A 59 209 59 HOH HOH . 
K 4 HOH A 60 210 60 HOH HOH . 
K 4 HOH A 61 211 61 HOH HOH . 
K 4 HOH A 62 212 62 HOH HOH . 
K 4 HOH A 63 213 63 HOH HOH . 
K 4 HOH A 64 214 64 HOH HOH . 
K 4 HOH A 65 215 65 HOH HOH . 
K 4 HOH A 66 216 66 HOH HOH . 
K 4 HOH A 67 217 67 HOH HOH . 
K 4 HOH A 68 218 68 HOH HOH . 
K 4 HOH A 69 219 69 HOH HOH . 
K 4 HOH A 70 220 70 HOH HOH . 
K 4 HOH A 71 221 71 HOH HOH . 
K 4 HOH A 72 222 72 HOH HOH . 
K 4 HOH A 73 223 73 HOH HOH . 
K 4 HOH A 74 224 74 HOH HOH . 
K 4 HOH A 75 225 75 HOH HOH . 
K 4 HOH A 76 226 76 HOH HOH . 
K 4 HOH A 77 227 77 HOH HOH . 
K 4 HOH A 78 228 78 HOH HOH . 
K 4 HOH A 79 229 79 HOH HOH . 
K 4 HOH A 80 230 80 HOH HOH . 
K 4 HOH A 81 231 81 HOH HOH . 
K 4 HOH A 82 232 82 HOH HOH . 
K 4 HOH A 83 233 83 HOH HOH . 
K 4 HOH A 84 234 84 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . B 2 40.292 72.932 1.302 1 47.88 ? C1 GOL 142 A 1 
HETATM 2 O O1 GOL . . . B 2 40.736 73.774 0.261 1 45.93 ? O1 GOL 142 A 1 
HETATM 3 C C2 GOL . . . B 2 41.496 72.452 2.1 1 48.82 ? C2 GOL 142 A 1 
HETATM 4 O O2 GOL . . . B 2 42.663 73.073 1.605 1 47.35 ? O2 GOL 142 A 1 
HETATM 5 C C3 GOL . . . B 2 41.628 70.941 1.988 1 38.7 ? C3 GOL 142 A 1 
HETATM 6 O O3 GOL . . . B 2 42.871 70.515 2.513 1 28.23 ? O3 GOL 142 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#