data_3OJX # _model_server_result.job_id oNzcICUo6yKUjprxpOgBuA _model_server_result.datetime_utc '2024-11-27 20:00:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ojx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":751}' # _entry.id 3OJX # _exptl.entry_id 3OJX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3OJX _cell.length_a 65.412 _cell.length_b 73.265 _cell.length_c 137.487 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OJX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 174 n n N1 C10 FMN doub 175 n n C2 O2 FMN doub 176 n n C2 N3 FMN sing 177 n n N3 C4 FMN sing 178 n n N3 HN3 FMN sing 179 n n C4 O4 FMN doub 180 n n C4 C4A FMN sing 181 n n C4A N5 FMN doub 182 n n C4A C10 FMN sing 183 n n N5 C5A FMN sing 184 n n C5A C6 FMN doub 185 n y C5A C9A FMN sing 186 n y C6 C7 FMN sing 187 n y C6 H6 FMN sing 188 n n C7 C7M FMN sing 189 n n C7 C8 FMN doub 190 n y C7M HM71 FMN sing 191 n n C7M HM72 FMN sing 192 n n C7M HM73 FMN sing 193 n n C8 C8M FMN sing 194 n n C8 C9 FMN sing 195 n y C8M HM81 FMN sing 196 n n C8M HM82 FMN sing 197 n n C8M HM83 FMN sing 198 n n C9 C9A FMN doub 199 n y C9 H9 FMN sing 200 n n C9A N10 FMN sing 201 n n N10 C10 FMN sing 202 n n N10 C1' FMN sing 203 n n C1' C2' FMN sing 204 n n C1' "H1'1" FMN sing 205 n n C1' "H1'2" FMN sing 206 n n C2' O2' FMN sing 207 n n C2' C3' FMN sing 208 n n C2' H2' FMN sing 209 n n O2' HO2' FMN sing 210 n n C3' O3' FMN sing 211 n n C3' C4' FMN sing 212 n n C3' H3' FMN sing 213 n n O3' HO3' FMN sing 214 n n C4' O4' FMN sing 215 n n C4' C5' FMN sing 216 n n C4' H4' FMN sing 217 n n O4' HO4' FMN sing 218 n n C5' O5' FMN sing 219 n n C5' "H5'1" FMN sing 220 n n C5' "H5'2" FMN sing 221 n n O5' P FMN sing 222 n n P O1P FMN doub 223 n n P O2P FMN sing 224 n n P O3P FMN sing 225 n n O2P HOP2 FMN sing 226 n n O3P HOP3 FMN sing 227 n n # _atom_sites.entry_id 3OJX _atom_sites.fract_transf_matrix[1][1] 0.015288 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013649 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007273 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 751 751 FMN FMN . C 3 FAD A 1 752 752 FAD FAD . D 4 NAP A 1 753 753 NAP NAP . E 5 HOH A 1 1 1 HOH WAT . E 5 HOH A 2 2 2 HOH WAT . E 5 HOH A 3 3 3 HOH WAT . E 5 HOH A 4 4 4 HOH WAT . E 5 HOH A 5 5 5 HOH WAT . E 5 HOH A 6 6 6 HOH WAT . E 5 HOH A 7 7 7 HOH WAT . E 5 HOH A 8 8 8 HOH WAT . E 5 HOH A 9 9 9 HOH WAT . E 5 HOH A 10 10 10 HOH WAT . E 5 HOH A 11 11 11 HOH WAT . E 5 HOH A 12 12 12 HOH WAT . E 5 HOH A 13 13 13 HOH WAT . E 5 HOH A 14 14 14 HOH WAT . E 5 HOH A 15 15 15 HOH WAT . E 5 HOH A 16 16 16 HOH WAT . E 5 HOH A 17 17 17 HOH WAT . E 5 HOH A 18 18 18 HOH WAT . E 5 HOH A 19 19 19 HOH WAT . E 5 HOH A 20 20 20 HOH WAT . E 5 HOH A 21 21 21 HOH WAT . E 5 HOH A 22 22 22 HOH WAT . E 5 HOH A 23 23 23 HOH WAT . E 5 HOH A 24 24 24 HOH WAT . E 5 HOH A 25 25 25 HOH WAT . E 5 HOH A 26 26 26 HOH WAT . E 5 HOH A 27 27 27 HOH WAT . E 5 HOH A 28 28 28 HOH WAT . E 5 HOH A 29 29 29 HOH WAT . E 5 HOH A 30 30 30 HOH WAT . E 5 HOH A 31 31 31 HOH WAT . E 5 HOH A 32 32 32 HOH WAT . E 5 HOH A 33 33 33 HOH WAT . E 5 HOH A 34 34 34 HOH WAT . E 5 HOH A 35 35 35 HOH WAT . E 5 HOH A 36 36 36 HOH WAT . E 5 HOH A 37 37 37 HOH WAT . E 5 HOH A 38 38 38 HOH WAT . E 5 HOH A 39 39 39 HOH WAT . E 5 HOH A 40 40 40 HOH WAT . E 5 HOH A 41 41 41 HOH WAT . E 5 HOH A 42 42 42 HOH WAT . E 5 HOH A 43 43 43 HOH WAT . E 5 HOH A 44 44 44 HOH WAT . E 5 HOH A 45 45 45 HOH WAT . E 5 HOH A 46 46 46 HOH WAT . E 5 HOH A 47 47 47 HOH WAT . E 5 HOH A 48 48 48 HOH WAT . E 5 HOH A 49 49 49 HOH WAT . E 5 HOH A 50 50 50 HOH WAT . E 5 HOH A 51 51 51 HOH WAT . E 5 HOH A 52 52 52 HOH WAT . E 5 HOH A 53 53 53 HOH WAT . E 5 HOH A 54 54 54 HOH WAT . E 5 HOH A 55 55 55 HOH WAT . E 5 HOH A 56 56 56 HOH WAT . E 5 HOH A 57 679 57 HOH WAT . E 5 HOH A 58 680 58 HOH WAT . E 5 HOH A 59 681 59 HOH WAT . E 5 HOH A 60 682 60 HOH WAT . E 5 HOH A 61 683 61 HOH WAT . E 5 HOH A 62 684 62 HOH WAT . E 5 HOH A 63 685 63 HOH WAT . E 5 HOH A 64 686 64 HOH WAT . E 5 HOH A 65 687 65 HOH WAT . E 5 HOH A 66 688 66 HOH WAT . E 5 HOH A 67 689 67 HOH WAT . E 5 HOH A 68 690 68 HOH WAT . E 5 HOH A 69 691 69 HOH WAT . E 5 HOH A 70 692 70 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . B 2 2.13 11.786 16.892 1 32.15 ? N1 FMN 751 A 1 HETATM 2 C C2 FMN . . . B 2 0.79 11.551 16.995 1 32.51 ? C2 FMN 751 A 1 HETATM 3 O O2 FMN . . . B 2 0.039 12.332 17.569 1 33.51 ? O2 FMN 751 A 1 HETATM 4 N N3 FMN . . . B 2 0.313 10.393 16.423 1 30.5 ? N3 FMN 751 A 1 HETATM 5 C C4 FMN . . . B 2 1.048 9.419 15.743 1 30.53 ? C4 FMN 751 A 1 HETATM 6 O O4 FMN . . . B 2 0.383 8.474 15.328 1 33.53 ? O4 FMN 751 A 1 HETATM 7 C C4A FMN . . . B 2 2.449 9.644 15.621 1 29.25 ? C4A FMN 751 A 1 HETATM 8 N N5 FMN . . . B 2 3.209 8.678 14.936 1 28.84 ? N5 FMN 751 A 1 HETATM 9 C C5A FMN . . . B 2 4.57 8.972 14.849 1 28.68 ? C5A FMN 751 A 1 HETATM 10 C C6 FMN . . . B 2 5.372 8.002 14.153 1 27.93 ? C6 FMN 751 A 1 HETATM 11 C C7 FMN . . . B 2 6.774 8.175 13.988 1 27.23 ? C7 FMN 751 A 1 HETATM 12 C C7M FMN . . . B 2 7.511 7.059 13.224 1 24.14 ? C7M FMN 751 A 1 HETATM 13 C C8 FMN . . . B 2 7.455 9.38 14.535 1 27.53 ? C8 FMN 751 A 1 HETATM 14 C C8M FMN . . . B 2 8.802 9.663 14.439 1 28.6 ? C8M FMN 751 A 1 HETATM 15 C C9 FMN . . . B 2 6.693 10.315 15.205 1 27 ? C9 FMN 751 A 1 HETATM 16 C C9A FMN . . . B 2 5.246 10.154 15.389 1 28.36 ? C9A FMN 751 A 1 HETATM 17 N N10 FMN . . . B 2 4.38 11.115 16.097 1 28.67 ? N10 FMN 751 A 1 HETATM 18 C C10 FMN . . . B 2 2.93 10.857 16.221 1 29.41 ? C10 FMN 751 A 1 HETATM 19 C C1' FMN . . . B 2 4.963 12.31 16.66 1 27.75 ? C1' FMN 751 A 1 HETATM 20 C C2' FMN . . . B 2 5.649 12.108 18.022 1 27.8 ? C2' FMN 751 A 1 HETATM 21 O O2' FMN . . . B 2 4.631 11.633 18.967 1 28.72 ? O2' FMN 751 A 1 HETATM 22 C C3' FMN . . . B 2 6.239 13.423 18.474 1 29.1 ? C3' FMN 751 A 1 HETATM 23 O O3' FMN . . . B 2 7.233 13.774 17.473 1 27.58 ? O3' FMN 751 A 1 HETATM 24 C C4' FMN . . . B 2 6.895 13.214 19.876 1 29.33 ? C4' FMN 751 A 1 HETATM 25 O O4' FMN . . . B 2 7.277 14.365 20.114 1 30.74 ? O4' FMN 751 A 1 HETATM 26 C C5' FMN . . . B 2 8.14 12.338 19.91 1 24.95 ? C5' FMN 751 A 1 HETATM 27 O O5' FMN . . . B 2 8.6 12.189 21.304 1 24.91 ? O5' FMN 751 A 1 HETATM 28 P P FMN . . . B 2 9.859 11.408 21.86 1 29 ? P FMN 751 A 1 HETATM 29 O O1P FMN . . . B 2 11.109 12.119 21.502 1 29.77 ? O1P FMN 751 A 1 HETATM 30 O O2P FMN . . . B 2 9.63 9.943 21.378 1 23.97 ? O2P FMN 751 A 1 HETATM 31 O O3P FMN . . . B 2 9.639 11.646 23.427 1 25.42 ? O3P FMN 751 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 31 #