data_3OJX # _model_server_result.job_id KV8p84MDpDNMWYsgQQSLVQ _model_server_result.datetime_utc '2025-02-17 15:05:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ojx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":752}' # _entry.id 3OJX # _exptl.entry_id 3OJX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3OJX _cell.length_a 65.412 _cell.length_b 73.265 _cell.length_c 137.487 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OJX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 3OJX _atom_sites.fract_transf_matrix[1][1] 0.015288 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013649 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007273 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 751 751 FMN FMN . C 3 FAD A 1 752 752 FAD FAD . D 4 NAP A 1 753 753 NAP NAP . E 5 HOH A 1 1 1 HOH WAT . E 5 HOH A 2 2 2 HOH WAT . E 5 HOH A 3 3 3 HOH WAT . E 5 HOH A 4 4 4 HOH WAT . E 5 HOH A 5 5 5 HOH WAT . E 5 HOH A 6 6 6 HOH WAT . E 5 HOH A 7 7 7 HOH WAT . E 5 HOH A 8 8 8 HOH WAT . E 5 HOH A 9 9 9 HOH WAT . E 5 HOH A 10 10 10 HOH WAT . E 5 HOH A 11 11 11 HOH WAT . E 5 HOH A 12 12 12 HOH WAT . E 5 HOH A 13 13 13 HOH WAT . E 5 HOH A 14 14 14 HOH WAT . E 5 HOH A 15 15 15 HOH WAT . E 5 HOH A 16 16 16 HOH WAT . E 5 HOH A 17 17 17 HOH WAT . E 5 HOH A 18 18 18 HOH WAT . E 5 HOH A 19 19 19 HOH WAT . E 5 HOH A 20 20 20 HOH WAT . E 5 HOH A 21 21 21 HOH WAT . E 5 HOH A 22 22 22 HOH WAT . E 5 HOH A 23 23 23 HOH WAT . E 5 HOH A 24 24 24 HOH WAT . E 5 HOH A 25 25 25 HOH WAT . E 5 HOH A 26 26 26 HOH WAT . E 5 HOH A 27 27 27 HOH WAT . E 5 HOH A 28 28 28 HOH WAT . E 5 HOH A 29 29 29 HOH WAT . E 5 HOH A 30 30 30 HOH WAT . E 5 HOH A 31 31 31 HOH WAT . E 5 HOH A 32 32 32 HOH WAT . E 5 HOH A 33 33 33 HOH WAT . E 5 HOH A 34 34 34 HOH WAT . E 5 HOH A 35 35 35 HOH WAT . E 5 HOH A 36 36 36 HOH WAT . E 5 HOH A 37 37 37 HOH WAT . E 5 HOH A 38 38 38 HOH WAT . E 5 HOH A 39 39 39 HOH WAT . E 5 HOH A 40 40 40 HOH WAT . E 5 HOH A 41 41 41 HOH WAT . E 5 HOH A 42 42 42 HOH WAT . E 5 HOH A 43 43 43 HOH WAT . E 5 HOH A 44 44 44 HOH WAT . E 5 HOH A 45 45 45 HOH WAT . E 5 HOH A 46 46 46 HOH WAT . E 5 HOH A 47 47 47 HOH WAT . E 5 HOH A 48 48 48 HOH WAT . E 5 HOH A 49 49 49 HOH WAT . E 5 HOH A 50 50 50 HOH WAT . E 5 HOH A 51 51 51 HOH WAT . E 5 HOH A 52 52 52 HOH WAT . E 5 HOH A 53 53 53 HOH WAT . E 5 HOH A 54 54 54 HOH WAT . E 5 HOH A 55 55 55 HOH WAT . E 5 HOH A 56 56 56 HOH WAT . E 5 HOH A 57 679 57 HOH WAT . E 5 HOH A 58 680 58 HOH WAT . E 5 HOH A 59 681 59 HOH WAT . E 5 HOH A 60 682 60 HOH WAT . E 5 HOH A 61 683 61 HOH WAT . E 5 HOH A 62 684 62 HOH WAT . E 5 HOH A 63 685 63 HOH WAT . E 5 HOH A 64 686 64 HOH WAT . E 5 HOH A 65 687 65 HOH WAT . E 5 HOH A 66 688 66 HOH WAT . E 5 HOH A 67 689 67 HOH WAT . E 5 HOH A 68 690 68 HOH WAT . E 5 HOH A 69 691 69 HOH WAT . E 5 HOH A 70 692 70 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . C 3 20.497 10.074 11.865 1 27.26 ? PA FAD 752 A 1 HETATM 2 O O1A FAD . . . C 3 21.853 10.528 12.189 1 30.92 ? O1A FAD 752 A 1 HETATM 3 O O2A FAD . . . C 3 19.638 9.763 12.992 1 27.6 ? O2A FAD 752 A 1 HETATM 4 O O5B FAD . . . C 3 19.747 11.157 10.926 1 26.17 ? O5B FAD 752 A 1 HETATM 5 C C5B FAD . . . C 3 18.392 11.005 10.417 1 31.14 ? C5B FAD 752 A 1 HETATM 6 C C4B FAD . . . C 3 17.746 12.355 10.117 1 33.59 ? C4B FAD 752 A 1 HETATM 7 O O4B FAD . . . C 3 18.449 13.043 9.081 1 33.44 ? O4B FAD 752 A 1 HETATM 8 C C3B FAD . . . C 3 16.31 12.27 9.596 1 34.67 ? C3B FAD 752 A 1 HETATM 9 O O3B FAD . . . C 3 15.374 12.076 10.656 1 37.61 ? O3B FAD 752 A 1 HETATM 10 C C2B FAD . . . C 3 16.13 13.59 8.854 1 33.65 ? C2B FAD 752 A 1 HETATM 11 O O2B FAD . . . C 3 15.663 14.669 9.678 1 33.56 ? O2B FAD 752 A 1 HETATM 12 C C1B FAD . . . C 3 17.515 13.82 8.305 1 32.75 ? C1B FAD 752 A 1 HETATM 13 N N9A FAD . . . C 3 17.746 13.475 6.862 1 33.25 ? N9A FAD 752 A 1 HETATM 14 C C8A FAD . . . C 3 17.933 12.283 6.176 1 31.89 ? C8A FAD 752 A 1 HETATM 15 N N7A FAD . . . C 3 18.127 12.297 4.821 1 30.44 ? N7A FAD 752 A 1 HETATM 16 C C5A FAD . . . C 3 18.052 13.684 4.63 1 30.27 ? C5A FAD 752 A 1 HETATM 17 C C6A FAD . . . C 3 18.161 14.525 3.456 1 30.92 ? C6A FAD 752 A 1 HETATM 18 N N6A FAD . . . C 3 18.375 14.029 2.24 1 33.14 ? N6A FAD 752 A 1 HETATM 19 N N1A FAD . . . C 3 18.041 15.919 3.587 1 30.9 ? N1A FAD 752 A 1 HETATM 20 C C2A FAD . . . C 3 17.814 16.52 4.831 1 30.78 ? C2A FAD 752 A 1 HETATM 21 N N3A FAD . . . C 3 17.69 15.836 6.015 1 30.06 ? N3A FAD 752 A 1 HETATM 22 C C4A FAD . . . C 3 17.819 14.407 5.859 1 30.73 ? C4A FAD 752 A 1 HETATM 23 N N1 FAD . . . C 3 15.562 2.436 8.682 1 27.93 ? N1 FAD 752 A 1 HETATM 24 C C2 FAD . . . C 3 16.093 1.491 7.848 1 28.74 ? C2 FAD 752 A 1 HETATM 25 O O2 FAD . . . C 3 16.986 1.818 7.067 1 29.88 ? O2 FAD 752 A 1 HETATM 26 N N3 FAD . . . C 3 15.55 0.184 7.968 1 26.22 ? N3 FAD 752 A 1 HETATM 27 C C4 FAD . . . C 3 14.511 -0.235 8.857 1 29.13 ? C4 FAD 752 A 1 HETATM 28 O O4 FAD . . . C 3 14.142 -1.414 8.845 1 31.16 ? O4 FAD 752 A 1 HETATM 29 C C4X FAD . . . C 3 13.967 0.832 9.721 1 28.75 ? C4X FAD 752 A 1 HETATM 30 N N5 FAD . . . C 3 12.932 0.486 10.611 1 27.42 ? N5 FAD 752 A 1 HETATM 31 C C5X FAD . . . C 3 12.413 1.515 11.435 1 26.67 ? C5X FAD 752 A 1 HETATM 32 C C6 FAD . . . C 3 11.326 1.141 12.349 1 26.95 ? C6 FAD 752 A 1 HETATM 33 C C7 FAD . . . C 3 10.691 2.075 13.239 1 24.82 ? C7 FAD 752 A 1 HETATM 34 C C7M FAD . . . C 3 9.556 1.63 14.17 1 25.16 ? C7M FAD 752 A 1 HETATM 35 C C8 FAD . . . C 3 11.203 3.525 13.206 1 26.82 ? C8 FAD 752 A 1 HETATM 36 C C8M FAD . . . C 3 10.61 4.641 14.1 1 27.59 ? C8M FAD 752 A 1 HETATM 37 C C9 FAD . . . C 3 12.243 3.892 12.346 1 25.8 ? C9 FAD 752 A 1 HETATM 38 C C9A FAD . . . C 3 12.875 2.937 11.448 1 25.53 ? C9A FAD 752 A 1 HETATM 39 N N10 FAD . . . C 3 13.985 3.24 10.495 1 26.56 ? N10 FAD 752 A 1 HETATM 40 C C10 FAD . . . C 3 14.541 2.157 9.592 1 26.84 ? C10 FAD 752 A 1 HETATM 41 C C1' FAD . . . C 3 14.637 4.568 10.34 1 24.82 ? C1' FAD 752 A 1 HETATM 42 C C2' FAD . . . C 3 15.819 4.209 11.375 1 25.28 ? C2' FAD 752 A 1 HETATM 43 O O2' FAD . . . C 3 15.41 4.081 12.771 1 28.57 ? O2' FAD 752 A 1 HETATM 44 C C3' FAD . . . C 3 16.96 5.29 11.318 1 26.63 ? C3' FAD 752 A 1 HETATM 45 O O3' FAD . . . C 3 16.326 6.521 11.666 1 25.12 ? O3' FAD 752 A 1 HETATM 46 C C4' FAD . . . C 3 17.637 5.589 9.959 1 27.92 ? C4' FAD 752 A 1 HETATM 47 O O4' FAD . . . C 3 18.265 4.382 9.591 1 28.76 ? O4' FAD 752 A 1 HETATM 48 C C5' FAD . . . C 3 18.762 6.661 10.038 1 27.81 ? C5' FAD 752 A 1 HETATM 49 O O5' FAD . . . C 3 19.451 6.704 11.241 1 29.05 ? O5' FAD 752 A 1 HETATM 50 P P FAD . . . C 3 20.866 7.365 11.371 1 29.6 ? P FAD 752 A 1 HETATM 51 O O1P FAD . . . C 3 21.203 7.227 12.809 1 25.9 ? O1P FAD 752 A 1 HETATM 52 O O2P FAD . . . C 3 21.847 6.719 10.437 1 28.21 ? O2P FAD 752 A 1 HETATM 53 O O3P FAD . . . C 3 20.547 8.807 10.952 1 25.96 ? O3P FAD 752 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 53 #