data_3OJX # _model_server_result.job_id xkm6J0lwX3m-Y-M4J_eisg _model_server_result.datetime_utc '2025-02-17 15:02:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ojx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":753}' # _entry.id 3OJX # _exptl.entry_id 3OJX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3OJX _cell.length_a 65.412 _cell.length_b 73.265 _cell.length_c 137.487 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OJX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 382 n n PA O2A NAP sing 383 n n PA O5B NAP sing 384 n n PA O3 NAP sing 385 n n O2A HOA2 NAP sing 386 n n O5B C5B NAP sing 387 n n C5B C4B NAP sing 388 n n C5B H51A NAP sing 389 n n C5B H52A NAP sing 390 n n C4B O4B NAP sing 391 n n C4B C3B NAP sing 392 n n C4B H4B NAP sing 393 n n O4B C1B NAP sing 394 n n C3B O3B NAP sing 395 n n C3B C2B NAP sing 396 n n C3B H3B NAP sing 397 n n O3B HO3A NAP sing 398 n n C2B O2B NAP sing 399 n n C2B C1B NAP sing 400 n n C2B H2B NAP sing 401 n n O2B P2B NAP sing 402 n n C1B N9A NAP sing 403 n n C1B H1B NAP sing 404 n n N9A C8A NAP sing 405 n y N9A C4A NAP sing 406 n y C8A N7A NAP doub 407 n y C8A H8A NAP sing 408 n n N7A C5A NAP sing 409 n y C5A C6A NAP sing 410 n y C5A C4A NAP doub 411 n y C6A N6A NAP sing 412 n n C6A N1A NAP doub 413 n y N6A H61A NAP sing 414 n n N6A H62A NAP sing 415 n n N1A C2A NAP sing 416 n y C2A N3A NAP doub 417 n y C2A H2A NAP sing 418 n n N3A C4A NAP sing 419 n y O3 PN NAP sing 420 n n PN O1N NAP doub 421 n n PN O2N NAP sing 422 n n PN O5D NAP sing 423 n n O5D C5D NAP sing 424 n n C5D C4D NAP sing 425 n n C5D H51N NAP sing 426 n n C5D H52N NAP sing 427 n n C4D O4D NAP sing 428 n n C4D C3D NAP sing 429 n n C4D H4D NAP sing 430 n n O4D C1D NAP sing 431 n n C3D O3D NAP sing 432 n n C3D C2D NAP sing 433 n n C3D H3D NAP sing 434 n n O3D HO3N NAP sing 435 n n C2D O2D NAP sing 436 n n C2D C1D NAP sing 437 n n C2D H2D NAP sing 438 n n O2D HO2N NAP sing 439 n n C1D N1N NAP sing 440 n n C1D H1D NAP sing 441 n n N1N C2N NAP sing 442 n y N1N C6N NAP doub 443 n y C2N C3N NAP doub 444 n y C2N H2N NAP sing 445 n n C3N C7N NAP sing 446 n n C3N C4N NAP sing 447 n y C7N O7N NAP doub 448 n n C7N N7N NAP sing 449 n n N7N H71N NAP sing 450 n n N7N H72N NAP sing 451 n n C4N C5N NAP doub 452 n y C4N H4N NAP sing 453 n n C5N C6N NAP sing 454 n y C5N H5N NAP sing 455 n n C6N H6N NAP sing 456 n n P2B O1X NAP doub 457 n n P2B O2X NAP sing 458 n n P2B O3X NAP sing 459 n n O2X HOP2 NAP sing 460 n n O3X HOP3 NAP sing 461 n n # _atom_sites.entry_id 3OJX _atom_sites.fract_transf_matrix[1][1] 0.015288 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013649 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007273 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 751 751 FMN FMN . C 3 FAD A 1 752 752 FAD FAD . D 4 NAP A 1 753 753 NAP NAP . E 5 HOH A 1 1 1 HOH WAT . E 5 HOH A 2 2 2 HOH WAT . E 5 HOH A 3 3 3 HOH WAT . E 5 HOH A 4 4 4 HOH WAT . E 5 HOH A 5 5 5 HOH WAT . E 5 HOH A 6 6 6 HOH WAT . E 5 HOH A 7 7 7 HOH WAT . E 5 HOH A 8 8 8 HOH WAT . E 5 HOH A 9 9 9 HOH WAT . E 5 HOH A 10 10 10 HOH WAT . E 5 HOH A 11 11 11 HOH WAT . E 5 HOH A 12 12 12 HOH WAT . E 5 HOH A 13 13 13 HOH WAT . E 5 HOH A 14 14 14 HOH WAT . E 5 HOH A 15 15 15 HOH WAT . E 5 HOH A 16 16 16 HOH WAT . E 5 HOH A 17 17 17 HOH WAT . E 5 HOH A 18 18 18 HOH WAT . E 5 HOH A 19 19 19 HOH WAT . E 5 HOH A 20 20 20 HOH WAT . E 5 HOH A 21 21 21 HOH WAT . E 5 HOH A 22 22 22 HOH WAT . E 5 HOH A 23 23 23 HOH WAT . E 5 HOH A 24 24 24 HOH WAT . E 5 HOH A 25 25 25 HOH WAT . E 5 HOH A 26 26 26 HOH WAT . E 5 HOH A 27 27 27 HOH WAT . E 5 HOH A 28 28 28 HOH WAT . E 5 HOH A 29 29 29 HOH WAT . E 5 HOH A 30 30 30 HOH WAT . E 5 HOH A 31 31 31 HOH WAT . E 5 HOH A 32 32 32 HOH WAT . E 5 HOH A 33 33 33 HOH WAT . E 5 HOH A 34 34 34 HOH WAT . E 5 HOH A 35 35 35 HOH WAT . E 5 HOH A 36 36 36 HOH WAT . E 5 HOH A 37 37 37 HOH WAT . E 5 HOH A 38 38 38 HOH WAT . E 5 HOH A 39 39 39 HOH WAT . E 5 HOH A 40 40 40 HOH WAT . E 5 HOH A 41 41 41 HOH WAT . E 5 HOH A 42 42 42 HOH WAT . E 5 HOH A 43 43 43 HOH WAT . E 5 HOH A 44 44 44 HOH WAT . E 5 HOH A 45 45 45 HOH WAT . E 5 HOH A 46 46 46 HOH WAT . E 5 HOH A 47 47 47 HOH WAT . E 5 HOH A 48 48 48 HOH WAT . E 5 HOH A 49 49 49 HOH WAT . E 5 HOH A 50 50 50 HOH WAT . E 5 HOH A 51 51 51 HOH WAT . E 5 HOH A 52 52 52 HOH WAT . E 5 HOH A 53 53 53 HOH WAT . E 5 HOH A 54 54 54 HOH WAT . E 5 HOH A 55 55 55 HOH WAT . E 5 HOH A 56 56 56 HOH WAT . E 5 HOH A 57 679 57 HOH WAT . E 5 HOH A 58 680 58 HOH WAT . E 5 HOH A 59 681 59 HOH WAT . E 5 HOH A 60 682 60 HOH WAT . E 5 HOH A 61 683 61 HOH WAT . E 5 HOH A 62 684 62 HOH WAT . E 5 HOH A 63 685 63 HOH WAT . E 5 HOH A 64 686 64 HOH WAT . E 5 HOH A 65 687 65 HOH WAT . E 5 HOH A 66 688 66 HOH WAT . E 5 HOH A 67 689 67 HOH WAT . E 5 HOH A 68 690 68 HOH WAT . E 5 HOH A 69 691 69 HOH WAT . E 5 HOH A 70 692 70 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . D 4 13.25 4.626 -1.783 1 50.31 ? PA NAP 753 A 1 HETATM 2 O O1A NAP . . . D 4 14.552 4.126 -2.238 1 52.37 ? O1A NAP 753 A 1 HETATM 3 O O2A NAP . . . D 4 12.953 5.967 -2.231 1 50.48 ? O2A NAP 753 A 1 HETATM 4 O O5B NAP . . . D 4 12.107 3.654 -2.324 1 48.88 ? O5B NAP 753 A 1 HETATM 5 C C5B NAP . . . D 4 10.711 3.752 -2.027 1 43.19 ? C5B NAP 753 A 1 HETATM 6 C C4B NAP . . . D 4 9.926 3.618 -3.314 1 41.65 ? C4B NAP 753 A 1 HETATM 7 O O4B NAP . . . D 4 8.646 4.231 -3.161 1 41.12 ? O4B NAP 753 A 1 HETATM 8 C C3B NAP . . . D 4 10.573 4.323 -4.51 1 39.01 ? C3B NAP 753 A 1 HETATM 9 O O3B NAP . . . D 4 10.413 3.573 -5.707 1 36.8 ? O3B NAP 753 A 1 HETATM 10 C C2B NAP . . . D 4 9.864 5.64 -4.546 1 38.4 ? C2B NAP 753 A 1 HETATM 11 O O2B NAP . . . D 4 9.926 6.269 -5.813 1 38.94 ? O2B NAP 753 A 1 HETATM 12 C C1B NAP . . . D 4 8.486 5.22 -4.172 1 39.95 ? C1B NAP 753 A 1 HETATM 13 N N9A NAP . . . D 4 7.577 6.25 -3.599 1 39.61 ? N9A NAP 753 A 1 HETATM 14 C C8A NAP . . . D 4 7.74 7.581 -3.302 1 39.73 ? C8A NAP 753 A 1 HETATM 15 N N7A NAP . . . D 4 6.705 8.292 -2.776 1 40.78 ? N7A NAP 753 A 1 HETATM 16 C C5A NAP . . . D 4 5.765 7.264 -2.745 1 38.73 ? C5A NAP 753 A 1 HETATM 17 C C6A NAP . . . D 4 4.396 7.21 -2.321 1 39.36 ? C6A NAP 753 A 1 HETATM 18 N N6A NAP . . . D 4 3.769 8.275 -1.844 1 39.34 ? N6A NAP 753 A 1 HETATM 19 N N1A NAP . . . D 4 3.684 5.997 -2.413 1 39.81 ? N1A NAP 753 A 1 HETATM 20 C C2A NAP . . . D 4 4.282 4.849 -2.907 1 37.4 ? C2A NAP 753 A 1 HETATM 21 N N3A NAP . . . D 4 5.577 4.775 -3.341 1 37.48 ? N3A NAP 753 A 1 HETATM 22 C C4A NAP . . . D 4 6.282 6.021 -3.237 1 38.45 ? C4A NAP 753 A 1 HETATM 23 O O3 NAP . . . D 4 12.969 4.476 -0.269 1 53.53 ? O3 NAP 753 A 1 HETATM 24 P PN NAP . . . D 4 14.008 4.1 0.805 1 54.21 ? PN NAP 753 A 1 HETATM 25 O O1N NAP . . . D 4 15.336 3.801 0.387 1 55.35 ? O1N NAP 753 A 1 HETATM 26 O O2N NAP . . . D 4 13.62 2.984 1.643 1 56.54 ? O2N NAP 753 A 1 HETATM 27 O O5D NAP . . . D 4 14.034 5.438 1.687 1 58.82 ? O5D NAP 753 A 1 HETATM 28 C C5D NAP . . . D 4 14.917 6.554 1.443 1 63.08 ? C5D NAP 753 A 1 HETATM 29 C C4D NAP . . . D 4 14.575 7.697 2.428 1 65.24 ? C4D NAP 753 A 1 HETATM 30 O O4D NAP . . . D 4 13.573 8.494 1.776 1 66.3 ? O4D NAP 753 A 1 HETATM 31 C C3D NAP . . . D 4 13.99 7.22 3.768 1 65.63 ? C3D NAP 753 A 1 HETATM 32 O O3D NAP . . . D 4 14.817 7.599 4.883 1 65.17 ? O3D NAP 753 A 1 HETATM 33 C C2D NAP . . . D 4 12.558 7.798 3.848 1 66.97 ? C2D NAP 753 A 1 HETATM 34 O O2D NAP . . . D 4 12.334 8.581 5.024 1 68.43 ? O2D NAP 753 A 1 HETATM 35 C C1D NAP . . . D 4 12.35 8.598 2.547 1 67.26 ? C1D NAP 753 A 1 HETATM 36 N N1N NAP . . . D 4 11.127 8.073 1.722 1 67.36 ? N1N NAP 753 A 1 HETATM 37 C C2N NAP . . . D 4 9.892 8.678 1.914 1 67.72 ? C2N NAP 753 A 1 HETATM 38 C C3N NAP . . . D 4 8.679 8.257 1.2 1 67.86 ? C3N NAP 753 A 1 HETATM 39 C C7N NAP . . . D 4 7.282 8.891 1.372 1 67.92 ? C7N NAP 753 A 1 HETATM 40 O O7N NAP . . . D 4 6.282 8.512 0.759 1 67.07 ? O7N NAP 753 A 1 HETATM 41 N N7N NAP . . . D 4 7.109 9.991 2.296 1 69.89 ? N7N NAP 753 A 1 HETATM 42 C C4N NAP . . . D 4 8.846 7.15 0.266 1 66.88 ? C4N NAP 753 A 1 HETATM 43 C C5N NAP . . . D 4 10.111 6.516 0.053 1 66.41 ? C5N NAP 753 A 1 HETATM 44 C C6N NAP . . . D 4 11.238 6.995 0.793 1 66.55 ? C6N NAP 753 A 1 HETATM 45 P P2B NAP . . . D 4 10.687 7.639 -6.122 1 38.84 ? P2B NAP 753 A 1 HETATM 46 O O1X NAP . . . D 4 9.634 8.832 -6.102 1 40.24 ? O1X NAP 753 A 1 HETATM 47 O O2X NAP . . . D 4 11.351 7.461 -7.56 1 39.54 ? O2X NAP 753 A 1 HETATM 48 O O3X NAP . . . D 4 11.821 7.912 -5.019 1 39.89 ? O3X NAP 753 A 1 # _model_server_stats.io_time_ms 85 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 1340 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 48 #