data_3OK9 # _model_server_result.job_id 2iOK6cbx1LtzX9eAdPqn8A _model_server_result.datetime_utc '2024-11-14 18:00:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ok9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":601}' # _entry.id 3OK9 # _exptl.entry_id 3OK9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3OK9 _cell.length_a 58.546 _cell.length_b 86.212 _cell.length_c 45.635 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OK9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 60 A ASP 60 1_555 D NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc2 D NA NA . A NA 502 1_555 N O HOH . A HOH 1107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc3 D NA NA . A NA 502 1_555 N O HOH . A HOH 1108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc4 D NA NA . A NA 502 1_555 N O HOH . A HOH 1170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.714 ? metalc ? metalc5 B O ASP 60 B ASP 160 1_555 H NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc6 H NA NA . B NA 501 1_555 O O HOH . B HOH 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc7 H NA NA . B NA 501 1_555 O O HOH . B HOH 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc8 H NA NA . B NA 501 1_555 O O HOH . B HOH 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? metalc ? metalc9 H NA NA . B NA 501 1_555 O O HOH . B HOH 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? metalc ? metalc10 H NA NA . B NA 501 1_555 O O HOH . B HOH 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 215 n n C1 C2 GOL sing 216 n n C1 H11 GOL sing 217 n n C1 H12 GOL sing 218 n n O1 HO1 GOL sing 219 n n C2 O2 GOL sing 220 n n C2 C3 GOL sing 221 n n C2 H2 GOL sing 222 n n O2 HO2 GOL sing 223 n n C3 O3 GOL sing 224 n n C3 H31 GOL sing 225 n n C3 H32 GOL sing 226 n n O3 HO3 GOL sing 227 n n # _atom_sites.entry_id 3OK9 _atom_sites.fract_transf_matrix[1][1] 0.017081 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011599 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021913 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 G52 A 1 401 401 G52 G52 . D 3 NA A 1 502 502 NA NA . E 4 CL A 1 512 512 CL CL . F 4 CL A 1 516 516 CL CL . G 5 GOL A 1 601 601 GOL GOL . H 3 NA B 1 501 501 NA NA . I 4 CL B 1 511 511 CL CL . J 4 CL B 1 513 513 CL CL . K 4 CL B 1 514 514 CL CL . L 4 CL B 1 515 515 CL CL . M 5 GOL B 1 602 602 GOL GOL . N 6 HOH A 1 1001 1001 HOH HOH . N 6 HOH A 2 1009 1009 HOH HOH . N 6 HOH A 3 1010 1010 HOH HOH . N 6 HOH A 4 1012 1012 HOH HOH . N 6 HOH A 5 1013 1013 HOH HOH . N 6 HOH A 6 1014 1014 HOH HOH . N 6 HOH A 7 1015 1015 HOH HOH . N 6 HOH A 8 1016 1016 HOH HOH . N 6 HOH A 9 1020 1020 HOH HOH . N 6 HOH A 10 1023 1023 HOH HOH . N 6 HOH A 11 1024 1024 HOH HOH . N 6 HOH A 12 1026 1026 HOH HOH . N 6 HOH A 13 1027 1027 HOH HOH . N 6 HOH A 14 1028 1028 HOH HOH . N 6 HOH A 15 1029 1029 HOH HOH . N 6 HOH A 16 1032 1032 HOH HOH . N 6 HOH A 17 1036 1036 HOH HOH . N 6 HOH A 18 1037 1037 HOH HOH . N 6 HOH A 19 1038 1038 HOH HOH . N 6 HOH A 20 1039 1039 HOH HOH . N 6 HOH A 21 1040 1040 HOH HOH . N 6 HOH A 22 1042 1042 HOH HOH . N 6 HOH A 23 1043 1043 HOH HOH . N 6 HOH A 24 1046 1046 HOH HOH . N 6 HOH A 25 1047 1047 HOH HOH . N 6 HOH A 26 1048 1048 HOH HOH . N 6 HOH A 27 1049 1049 HOH HOH . N 6 HOH A 28 1050 1050 HOH HOH . N 6 HOH A 29 1052 1052 HOH HOH . N 6 HOH A 30 1054 1054 HOH HOH . N 6 HOH A 31 1055 1055 HOH HOH . N 6 HOH A 32 1056 1056 HOH HOH . N 6 HOH A 33 1057 1057 HOH HOH . N 6 HOH A 34 1058 1058 HOH HOH . N 6 HOH A 35 1059 1059 HOH HOH . N 6 HOH A 36 1060 1060 HOH HOH . N 6 HOH A 37 1061 1061 HOH HOH . N 6 HOH A 38 1062 1062 HOH HOH . N 6 HOH A 39 1063 1063 HOH HOH . N 6 HOH A 40 1064 1064 HOH HOH . N 6 HOH A 41 1069 1069 HOH HOH . N 6 HOH A 42 1073 1073 HOH HOH . N 6 HOH A 43 1075 1075 HOH HOH . N 6 HOH A 44 1079 1079 HOH HOH . N 6 HOH A 45 1081 1081 HOH HOH . N 6 HOH A 46 1082 1082 HOH HOH . N 6 HOH A 47 1083 1083 HOH HOH . N 6 HOH A 48 1087 1087 HOH HOH . N 6 HOH A 49 1090 1090 HOH HOH . N 6 HOH A 50 1091 1091 HOH HOH . N 6 HOH A 51 1093 1093 HOH HOH . N 6 HOH A 52 1094 1094 HOH HOH . N 6 HOH A 53 1097 1097 HOH HOH . N 6 HOH A 54 1100 1100 HOH HOH . N 6 HOH A 55 1101 1101 HOH HOH . N 6 HOH A 56 1102 1102 HOH HOH . N 6 HOH A 57 1104 1104 HOH HOH . N 6 HOH A 58 1107 1107 HOH HOH . N 6 HOH A 59 1108 1108 HOH HOH . N 6 HOH A 60 1109 1109 HOH HOH . N 6 HOH A 61 1110 1110 HOH HOH . N 6 HOH A 62 1111 1111 HOH HOH . N 6 HOH A 63 1112 1112 HOH HOH . N 6 HOH A 64 1113 1113 HOH HOH . N 6 HOH A 65 1114 1114 HOH HOH . N 6 HOH A 66 1115 1115 HOH HOH . N 6 HOH A 67 1116 1116 HOH HOH . N 6 HOH A 68 1118 1118 HOH HOH . N 6 HOH A 69 1120 1120 HOH HOH . N 6 HOH A 70 1122 1122 HOH HOH . N 6 HOH A 71 1123 1123 HOH HOH . N 6 HOH A 72 1127 1127 HOH HOH . N 6 HOH A 73 1128 1128 HOH HOH . N 6 HOH A 74 1129 1129 HOH HOH . N 6 HOH A 75 1130 1130 HOH HOH . N 6 HOH A 76 1132 1132 HOH HOH . N 6 HOH A 77 1133 1133 HOH HOH . N 6 HOH A 78 1134 1134 HOH HOH . N 6 HOH A 79 1135 1135 HOH HOH . N 6 HOH A 80 1137 1137 HOH HOH . N 6 HOH A 81 1139 1139 HOH HOH . N 6 HOH A 82 1140 1140 HOH HOH . N 6 HOH A 83 1141 1141 HOH HOH . N 6 HOH A 84 1142 1142 HOH HOH . N 6 HOH A 85 1144 1144 HOH HOH . N 6 HOH A 86 1147 1147 HOH HOH . N 6 HOH A 87 1148 1148 HOH HOH . N 6 HOH A 88 1149 1149 HOH HOH . N 6 HOH A 89 1151 1151 HOH HOH . N 6 HOH A 90 1152 1152 HOH HOH . N 6 HOH A 91 1153 1153 HOH HOH . N 6 HOH A 92 1154 1154 HOH HOH . N 6 HOH A 93 1159 1159 HOH HOH . N 6 HOH A 94 1160 1160 HOH HOH . N 6 HOH A 95 1170 1170 HOH HOH . N 6 HOH A 96 1171 1171 HOH HOH . N 6 HOH A 97 1177 1177 HOH HOH . N 6 HOH A 98 1178 1178 HOH HOH . O 6 HOH B 1 1002 1002 HOH HOH . O 6 HOH B 2 1003 1003 HOH HOH . O 6 HOH B 3 1004 1004 HOH HOH . O 6 HOH B 4 1005 1005 HOH HOH . O 6 HOH B 5 1006 1006 HOH HOH . O 6 HOH B 6 1007 1007 HOH HOH . O 6 HOH B 7 1008 1008 HOH HOH . O 6 HOH B 8 1011 1011 HOH HOH . O 6 HOH B 9 1017 1017 HOH HOH . O 6 HOH B 10 1018 1018 HOH HOH . O 6 HOH B 11 1019 1019 HOH HOH . O 6 HOH B 12 1021 1021 HOH HOH . O 6 HOH B 13 1022 1022 HOH HOH . O 6 HOH B 14 1025 1025 HOH HOH . O 6 HOH B 15 1030 1030 HOH HOH . O 6 HOH B 16 1031 1031 HOH HOH . O 6 HOH B 17 1033 1033 HOH HOH . O 6 HOH B 18 1034 1034 HOH HOH . O 6 HOH B 19 1035 1035 HOH HOH . O 6 HOH B 20 1041 1041 HOH HOH . O 6 HOH B 21 1044 1044 HOH HOH . O 6 HOH B 22 1045 1045 HOH HOH . O 6 HOH B 23 1051 1051 HOH HOH . O 6 HOH B 24 1053 1053 HOH HOH . O 6 HOH B 25 1065 1065 HOH HOH . O 6 HOH B 26 1066 1066 HOH HOH . O 6 HOH B 27 1067 1067 HOH HOH . O 6 HOH B 28 1068 1068 HOH HOH . O 6 HOH B 29 1070 1070 HOH HOH . O 6 HOH B 30 1071 1071 HOH HOH . O 6 HOH B 31 1072 1072 HOH HOH . O 6 HOH B 32 1074 1074 HOH HOH . O 6 HOH B 33 1076 1076 HOH HOH . O 6 HOH B 34 1077 1077 HOH HOH . O 6 HOH B 35 1078 1078 HOH HOH . O 6 HOH B 36 1080 1080 HOH HOH . O 6 HOH B 37 1084 1084 HOH HOH . O 6 HOH B 38 1085 1085 HOH HOH . O 6 HOH B 39 1086 1086 HOH HOH . O 6 HOH B 40 1088 1088 HOH HOH . O 6 HOH B 41 1089 1089 HOH HOH . O 6 HOH B 42 1092 1092 HOH HOH . O 6 HOH B 43 1095 1095 HOH HOH . O 6 HOH B 44 1096 1096 HOH HOH . O 6 HOH B 45 1098 1098 HOH HOH . O 6 HOH B 46 1099 1099 HOH HOH . O 6 HOH B 47 1103 1103 HOH HOH . O 6 HOH B 48 1105 1105 HOH HOH . O 6 HOH B 49 1106 1106 HOH HOH . O 6 HOH B 50 1117 1117 HOH HOH . O 6 HOH B 51 1119 1119 HOH HOH . O 6 HOH B 52 1121 1121 HOH HOH . O 6 HOH B 53 1124 1124 HOH HOH . O 6 HOH B 54 1125 1125 HOH HOH . O 6 HOH B 55 1126 1126 HOH HOH . O 6 HOH B 56 1131 1131 HOH HOH . O 6 HOH B 57 1138 1138 HOH HOH . O 6 HOH B 58 1143 1143 HOH HOH . O 6 HOH B 59 1145 1145 HOH HOH . O 6 HOH B 60 1146 1146 HOH HOH . O 6 HOH B 61 1150 1150 HOH HOH . O 6 HOH B 62 1155 1155 HOH HOH . O 6 HOH B 63 1157 1157 HOH HOH . O 6 HOH B 64 1158 1158 HOH HOH . O 6 HOH B 65 1161 1161 HOH HOH . O 6 HOH B 66 1163 1163 HOH HOH . O 6 HOH B 67 1164 1164 HOH HOH . O 6 HOH B 68 1165 1165 HOH HOH . O 6 HOH B 69 1166 1166 HOH HOH . O 6 HOH B 70 1167 1167 HOH HOH . O 6 HOH B 71 1168 1168 HOH HOH . O 6 HOH B 72 1169 1169 HOH HOH . O 6 HOH B 73 1172 1172 HOH HOH . O 6 HOH B 74 1173 1173 HOH HOH . O 6 HOH B 75 1174 1174 HOH HOH . O 6 HOH B 76 1175 1175 HOH HOH . O 6 HOH B 77 1176 1176 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 5 18.656 5.017 24.479 0.3 32.05 ? C1 GOL 601 A 1 HETATM 2 O O1 GOL . . . G 5 18.654 6.419 24.227 0.3 28.91 ? O1 GOL 601 A 1 HETATM 3 C C2 GOL . . . G 5 19.058 4.781 25.943 0.3 32.96 ? C2 GOL 601 A 1 HETATM 4 O O2 GOL . . . G 5 19.803 5.887 26.438 0.3 25.85 ? O2 GOL 601 A 1 HETATM 5 C C3 GOL . . . G 5 19.735 3.431 26.046 0.3 34.46 ? C3 GOL 601 A 1 HETATM 6 O O3 GOL . . . G 5 20.846 3.384 26.935 0.3 31.63 ? O3 GOL 601 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #