data_3OKH
#
_model_server_result.job_id            PT2POwyE1825hSH-j80cZQ 
_model_server_result.datetime_utc      '2024-12-26 16:04:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3okh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":2}' 
#
_entry.id    3OKH 
#
_exptl.entry_id    3OKH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              494.025 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-(4-chlorophenyl)-1-[(1S)-1-cyclohexyl-2-(cyclohexylamino)-2-oxoethyl]-1H-benzimidazole-6-carboxylic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3OKH 
_cell.length_a            35.73 
_cell.length_b            153.68 
_cell.length_c            115.32 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3OKH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
_chem_comp.formula           'C28 H32 Cl N3 O3' 
_chem_comp.formula_weight    494.025 
_chem_comp.id                OKH 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-(4-chlorophenyl)-1-[(1S)-1-cyclohexyl-2-(cyclohexylamino)-2-oxoethyl]-1H-benzimidazole-6-carboxylic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 OKH doub 237 n y 
C1 C4 OKH sing 238 n y 
C2 C3 OKH sing 239 n y 
C2 C17 OKH sing 240 n n 
C3 C6 OKH doub 241 n y 
C4 C5 OKH doub 242 n y 
C5 C6 OKH sing 243 n y 
C5 N9 OKH sing 244 n y 
C6 N7 OKH sing 245 n y 
N7 C8 OKH sing 246 n y 
N7 C11 OKH sing 247 n n 
C8 N9 OKH doub 248 n y 
C8 C10 OKH sing 249 n y 
C10 C20 OKH doub 250 n y 
C10 C24 OKH sing 251 n y 
C11 C12 OKH sing 252 n n 
C11 C13 OKH sing 253 n n 
C12 O14 OKH doub 254 n n 
C12 N15 OKH sing 255 n n 
C13 C25 OKH sing 256 n n 
C13 C29 OKH sing 257 n n 
N15 C16 OKH sing 258 n n 
C16 C30 OKH sing 259 n n 
C16 C34 OKH sing 260 n n 
C17 O18 OKH sing 261 n n 
C17 O19 OKH doub 262 n n 
C20 C21 OKH sing 263 n y 
C21 C22 OKH doub 264 n y 
C22 C23 OKH sing 265 n y 
C22 CL35 OKH sing 266 n n 
C23 C24 OKH doub 267 n y 
C25 C26 OKH sing 268 n n 
C26 C27 OKH sing 269 n n 
C27 C28 OKH sing 270 n n 
C28 C29 OKH sing 271 n n 
C30 C31 OKH sing 272 n n 
C31 C32 OKH sing 273 n n 
C32 C33 OKH sing 274 n n 
C33 C34 OKH sing 275 n n 
C1 H1 OKH sing 276 n n 
C3 H3 OKH sing 277 n n 
C4 H4 OKH sing 278 n n 
C11 H11 OKH sing 279 n n 
C13 H13 OKH sing 280 n n 
N15 HN15 OKH sing 281 n n 
C16 H16 OKH sing 282 n n 
C20 H20 OKH sing 283 n n 
C21 H21 OKH sing 284 n n 
C23 H23 OKH sing 285 n n 
C24 H24 OKH sing 286 n n 
C25 H25 OKH sing 287 n n 
C25 H25A OKH sing 288 n n 
C26 H26 OKH sing 289 n n 
C26 H26A OKH sing 290 n n 
C27 H27 OKH sing 291 n n 
C27 H27A OKH sing 292 n n 
C28 H28 OKH sing 293 n n 
C28 H28A OKH sing 294 n n 
C29 H29 OKH sing 295 n n 
C29 H29A OKH sing 296 n n 
C30 H30 OKH sing 297 n n 
C30 H30A OKH sing 298 n n 
C31 H31 OKH sing 299 n n 
C31 H31A OKH sing 300 n n 
C32 H32 OKH sing 301 n n 
C32 H32A OKH sing 302 n n 
C33 H33 OKH sing 303 n n 
C33 H33A OKH sing 304 n n 
C34 H34 OKH sing 305 n n 
C34 H34A OKH sing 306 n n 
O18 H18 OKH sing 307 n n 
#
_atom_sites.entry_id                     3OKH 
_atom_sites.fract_transf_matrix[1][1]    0.027988 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006507 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008672 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 OKH A 1 1 1 OKH UNL . 
D 3 OKH A 1 2 2 OKH UNL . 
E 4 HOH A 1 3 3 HOH HOH . 
E 4 HOH A 2 4 4 HOH HOH . 
E 4 HOH A 3 6 6 HOH HOH . 
E 4 HOH A 4 7 7 HOH HOH . 
E 4 HOH A 5 8 8 HOH HOH . 
E 4 HOH A 6 9 9 HOH HOH . 
E 4 HOH A 7 10 10 HOH HOH . 
E 4 HOH A 8 11 11 HOH HOH . 
E 4 HOH A 9 12 12 HOH HOH . 
E 4 HOH A 10 14 14 HOH HOH . 
E 4 HOH A 11 15 15 HOH HOH . 
E 4 HOH A 12 17 17 HOH HOH . 
E 4 HOH A 13 18 18 HOH HOH . 
E 4 HOH A 14 477 1 HOH HOH . 
E 4 HOH A 15 478 2 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 OKH . . . D 3 16.525 59.063 16.382 1 50.24 ? C1 OKH 2 A 1 
HETATM 2 C C2 OKH . . . D 3 16.42 60.475 16.412 1 49.67 ? C2 OKH 2 A 1 
HETATM 3 C C3 OKH . . . D 3 15.213 61.154 16.402 1 47.96 ? C3 OKH 2 A 1 
HETATM 4 C C4 OKH . . . D 3 15.393 58.262 16.368 1 47.96 ? C4 OKH 2 A 1 
HETATM 5 C C5 OKH . . . D 3 14.142 58.915 16.337 1 49.54 ? C5 OKH 2 A 1 
HETATM 6 C C6 OKH . . . D 3 14.073 60.367 16.363 1 48.81 ? C6 OKH 2 A 1 
HETATM 7 N N7 OKH . . . D 3 12.723 60.703 16.288 1 50.93 ? N7 OKH 2 A 1 
HETATM 8 C C8 OKH . . . D 3 12.025 59.489 16.353 1 53.43 ? C8 OKH 2 A 1 
HETATM 9 N N9 OKH . . . D 3 12.834 58.409 16.271 1 52.53 ? N9 OKH 2 A 1 
HETATM 10 C C10 OKH . . . D 3 10.585 59.527 16.152 1 58.37 ? C10 OKH 2 A 1 
HETATM 11 C C11 OKH . . . D 3 12.117 62.006 16.181 1 49.92 ? C11 OKH 2 A 1 
HETATM 12 C C12 OKH . . . D 3 12.693 62.88 15.039 1 47.53 ? C12 OKH 2 A 1 
HETATM 13 C C13 OKH . . . D 3 12.01 62.864 17.47 1 46.46 ? C13 OKH 2 A 1 
HETATM 14 O O14 OKH . . . D 3 12.547 64.108 15.075 1 48.85 ? O14 OKH 2 A 1 
HETATM 15 N N15 OKH . . . D 3 13.325 62.232 14.023 1 49.89 ? N15 OKH 2 A 1 
HETATM 16 C C16 OKH . . . D 3 13.925 62.896 12.894 1 50.88 ? C16 OKH 2 A 1 
HETATM 17 C C17 OKH . . . D 3 17.569 61.337 16.39 1 51.94 ? C17 OKH 2 A 1 
HETATM 18 O O18 OKH . . . D 3 18.769 60.69 16.469 1 54.38 ? O18 OKH 2 A 1 
HETATM 19 O O19 OKH . . . D 3 17.533 62.573 16.281 1 52.49 ? O19 OKH 2 A 1 
HETATM 20 C C20 OKH . . . D 3 9.644 59.327 17.186 1 58.24 ? C20 OKH 2 A 1 
HETATM 21 C C21 OKH . . . D 3 8.278 59.472 16.898 1 56.99 ? C21 OKH 2 A 1 
HETATM 22 C C22 OKH . . . D 3 7.898 59.824 15.589 1 62.8 ? C22 OKH 2 A 1 
HETATM 23 C C23 OKH . . . D 3 8.836 60.067 14.578 1 61.86 ? C23 OKH 2 A 1 
HETATM 24 C C24 OKH . . . D 3 10.178 59.891 14.858 1 60.52 ? C24 OKH 2 A 1 
HETATM 25 C C25 OKH . . . D 3 13.354 63.228 18.073 1 41.92 ? C25 OKH 2 A 1 
HETATM 26 C C26 OKH . . . D 3 13.132 64.241 19.185 1 41.39 ? C26 OKH 2 A 1 
HETATM 27 C C27 OKH . . . D 3 12.198 63.727 20.267 1 40.96 ? C27 OKH 2 A 1 
HETATM 28 C C28 OKH . . . D 3 10.906 63.141 19.688 1 42.87 ? C28 OKH 2 A 1 
HETATM 29 C C29 OKH . . . D 3 11.101 62.191 18.5 1 40.96 ? C29 OKH 2 A 1 
HETATM 30 C C30 OKH . . . D 3 12.887 62.904 11.746 1 49.37 ? C30 OKH 2 A 1 
HETATM 31 C C31 OKH . . . D 3 13.493 63.387 10.447 1 50.51 ? C31 OKH 2 A 1 
HETATM 32 C C32 OKH . . . D 3 14.746 62.635 10.072 1 51.07 ? C32 OKH 2 A 1 
HETATM 33 C C33 OKH . . . D 3 15.78 62.689 11.18 1 52.55 ? C33 OKH 2 A 1 
HETATM 34 C C34 OKH . . . D 3 15.23 62.173 12.502 1 51.28 ? C34 OKH 2 A 1 
HETATM 35 CL CL35 OKH . . . D 3 6.284 60.005 15.113 1 70.14 ? CL35 OKH 2 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           338 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           35 
#