data_3OKI # _model_server_result.job_id T1yLOXez_UogUprVxSk-bA _model_server_result.datetime_utc '2024-12-26 23:24:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3oki # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":2}' # _entry.id 3OKI # _exptl.entry_id 3OKI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 450.015 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S)-2-[2-(4-chlorophenyl)-1H-benzimidazol-1-yl]-N,2-dicyclohexylethanamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3OKI _cell.length_a 72.215 _cell.length_b 84.528 _cell.length_c 190.24 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OKI _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G 1 1 C,D,F,H,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C27 H32 Cl N3 O' _chem_comp.formula_weight 450.015 _chem_comp.id OKI _chem_comp.mon_nstd_flag . _chem_comp.name (2S)-2-[2-(4-chlorophenyl)-1H-benzimidazol-1-yl]-N,2-dicyclohexylethanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N2 OKI sing 237 n y C1 N3 OKI doub 238 n y C1 C9 OKI sing 239 n y N2 C5 OKI sing 240 n n N2 C6 OKI sing 241 n y N3 C7 OKI sing 242 n y C4 C5 OKI sing 243 n n C4 N8 OKI sing 244 n n C4 O10 OKI doub 245 n n C5 C11 OKI sing 246 n n C6 C7 OKI doub 247 n y C6 C19 OKI sing 248 n y C7 C20 OKI sing 249 n y N8 C15 OKI sing 250 n n C9 C12 OKI doub 251 n y C9 C13 OKI sing 252 n y C11 C21 OKI sing 253 n n C11 C22 OKI sing 254 n n C12 C16 OKI sing 255 n y C13 C17 OKI doub 256 n y C14 C16 OKI doub 257 n y C14 C17 OKI sing 258 n y C14 CL18 OKI sing 259 n n C15 C23 OKI sing 260 n n C15 C24 OKI sing 261 n n C19 C25 OKI doub 262 n y C20 C26 OKI doub 263 n y C21 C28 OKI sing 264 n n C22 C27 OKI sing 265 n n C23 C30 OKI sing 266 n n C24 C29 OKI sing 267 n n C25 C26 OKI sing 268 n y C27 C31 OKI sing 269 n n C28 C31 OKI sing 270 n n C29 C32 OKI sing 271 n n C30 C32 OKI sing 272 n n C5 H5 OKI sing 273 n n N8 HN8 OKI sing 274 n n C11 H11 OKI sing 275 n n C12 H12 OKI sing 276 n n C13 H13 OKI sing 277 n n C15 H15 OKI sing 278 n n C16 H16 OKI sing 279 n n C17 H17 OKI sing 280 n n C19 H19 OKI sing 281 n n C20 H20 OKI sing 282 n n C21 H21 OKI sing 283 n n C21 H21A OKI sing 284 n n C22 H22 OKI sing 285 n n C22 H22A OKI sing 286 n n C23 H23 OKI sing 287 n n C23 H23A OKI sing 288 n n C24 H24 OKI sing 289 n n C24 H24A OKI sing 290 n n C25 H25 OKI sing 291 n n C26 H26 OKI sing 292 n n C27 H27 OKI sing 293 n n C27 H27A OKI sing 294 n n C28 H28 OKI sing 295 n n C28 H28A OKI sing 296 n n C29 H29 OKI sing 297 n n C29 H29A OKI sing 298 n n C30 H30 OKI sing 299 n n C30 H30A OKI sing 300 n n C31 H31 OKI sing 301 n n C31 H31A OKI sing 302 n n C32 H32 OKI sing 303 n n C32 H32A OKI sing 304 n n # _atom_sites.entry_id 3OKI _atom_sites.fract_transf_matrix[1][1] 0.013848 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01183 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005257 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 OKI A 1 2 2 OKI UNL . F 3 OKI C 1 1 1 OKI UNL . G 4 HOH A 1 1 1 HOH WAT . G 4 HOH A 2 3 3 HOH WAT . G 4 HOH A 3 7 7 HOH WAT . G 4 HOH A 4 10 10 HOH WAT . G 4 HOH A 5 13 13 HOH WAT . G 4 HOH A 6 14 14 HOH WAT . G 4 HOH A 7 15 15 HOH WAT . G 4 HOH A 8 16 16 HOH WAT . G 4 HOH A 9 17 17 HOH WAT . G 4 HOH A 10 20 20 HOH WAT . G 4 HOH A 11 21 21 HOH WAT . G 4 HOH A 12 22 22 HOH WAT . G 4 HOH A 13 23 23 HOH WAT . G 4 HOH A 14 25 25 HOH WAT . G 4 HOH A 15 26 26 HOH WAT . G 4 HOH A 16 27 27 HOH WAT . G 4 HOH A 17 29 29 HOH WAT . G 4 HOH A 18 30 30 HOH WAT . G 4 HOH A 19 31 31 HOH WAT . G 4 HOH A 20 32 32 HOH WAT . G 4 HOH A 21 33 33 HOH WAT . G 4 HOH A 22 34 34 HOH WAT . G 4 HOH A 23 36 36 HOH WAT . G 4 HOH A 24 37 37 HOH WAT . G 4 HOH A 25 38 38 HOH WAT . G 4 HOH A 26 39 39 HOH WAT . G 4 HOH A 27 40 40 HOH WAT . G 4 HOH A 28 477 2 HOH WAT . H 4 HOH C 1 4 4 HOH WAT . H 4 HOH C 2 5 5 HOH WAT . H 4 HOH C 3 6 6 HOH WAT . H 4 HOH C 4 8 8 HOH WAT . H 4 HOH C 5 9 9 HOH WAT . H 4 HOH C 6 11 11 HOH WAT . H 4 HOH C 7 12 12 HOH WAT . H 4 HOH C 8 19 19 HOH WAT . H 4 HOH C 9 24 24 HOH WAT . H 4 HOH C 10 28 28 HOH WAT . H 4 HOH C 11 35 35 HOH WAT . I 4 HOH D 1 18 18 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OKI . . . E 3 13.649 24.995 2.813 1 37.67 ? C1 OKI 2 A 1 HETATM 2 N N2 OKI . . . E 3 12.818 24.333 3.76 1 41.94 ? N2 OKI 2 A 1 HETATM 3 N N3 OKI . . . E 3 12.982 25.914 2.087 1 37.15 ? N3 OKI 2 A 1 HETATM 4 C C4 OKI . . . E 3 12.515 21.99 4.388 1 40.35 ? C4 OKI 2 A 1 HETATM 5 C C5 OKI . . . E 3 13.244 23.333 4.695 1 39.37 ? C5 OKI 2 A 1 HETATM 6 C C6 OKI . . . E 3 11.537 24.889 3.612 1 39.27 ? C6 OKI 2 A 1 HETATM 7 C C7 OKI . . . E 3 11.657 25.885 2.562 1 37.64 ? C7 OKI 2 A 1 HETATM 8 N N8 OKI . . . E 3 12.54 21.609 3.075 1 38.55 ? N8 OKI 2 A 1 HETATM 9 C C9 OKI . . . E 3 15.068 24.657 2.654 1 39.9 ? C9 OKI 2 A 1 HETATM 10 O O10 OKI . . . E 3 11.968 21.313 5.275 1 44.03 ? O10 OKI 2 A 1 HETATM 11 C C11 OKI . . . E 3 13.093 23.708 6.191 1 42.31 ? C11 OKI 2 A 1 HETATM 12 C C12 OKI . . . E 3 15.431 23.583 1.834 1 39.36 ? C12 OKI 2 A 1 HETATM 13 C C13 OKI . . . E 3 16.059 25.385 3.327 1 41.73 ? C13 OKI 2 A 1 HETATM 14 C C14 OKI . . . E 3 17.751 23.963 2.338 1 48.79 ? C14 OKI 2 A 1 HETATM 15 C C15 OKI . . . E 3 11.875 20.442 2.546 1 34.27 ? C15 OKI 2 A 1 HETATM 16 C C16 OKI . . . E 3 16.766 23.232 1.669 1 42.78 ? C16 OKI 2 A 1 HETATM 17 C C17 OKI . . . E 3 17.402 25.039 3.165 1 45.65 ? C17 OKI 2 A 1 HETATM 18 CL CL18 OKI . . . E 3 19.382 23.532 2.134 1 55.53 ? CL18 OKI 2 A 1 HETATM 19 C C19 OKI . . . E 3 10.313 24.658 4.258 1 38.11 ? C19 OKI 2 A 1 HETATM 20 C C20 OKI . . . E 3 10.528 26.629 2.183 1 40.11 ? C20 OKI 2 A 1 HETATM 21 C C21 OKI . . . E 3 13.228 25.209 6.402 1 46.52 ? C21 OKI 2 A 1 HETATM 22 C C22 OKI . . . E 3 14.136 22.956 7.009 1 43.86 ? C22 OKI 2 A 1 HETATM 23 C C23 OKI . . . E 3 12.762 19.712 1.52 1 41.67 ? C23 OKI 2 A 1 HETATM 24 C C24 OKI . . . E 3 10.554 20.84 1.87 1 39.08 ? C24 OKI 2 A 1 HETATM 25 C C25 OKI . . . E 3 9.223 25.414 3.855 1 41.88 ? C25 OKI 2 A 1 HETATM 26 C C26 OKI . . . E 3 9.331 26.379 2.836 1 39.37 ? C26 OKI 2 A 1 HETATM 27 C C27 OKI . . . E 3 14.058 23.337 8.472 1 39.32 ? C27 OKI 2 A 1 HETATM 28 C C28 OKI . . . E 3 13.255 25.599 7.869 1 46.98 ? C28 OKI 2 A 1 HETATM 29 C C29 OKI . . . E 3 9.854 19.615 1.328 1 42.44 ? C29 OKI 2 A 1 HETATM 30 C C30 OKI . . . E 3 12.057 18.506 0.942 1 36.57 ? C30 OKI 2 A 1 HETATM 31 C C31 OKI . . . E 3 14.288 24.819 8.653 1 43.64 ? C31 OKI 2 A 1 HETATM 32 C C32 OKI . . . E 3 10.742 18.918 0.318 1 39.74 ? C32 OKI 2 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #