data_3OKN # _model_server_result.job_id -GjKBKRCn8mTwWSSQwJUsQ _model_server_result.datetime_utc '2024-11-14 23:40:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3okn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":215}' # _entry.id 3OKN # _exptl.entry_id 3OKN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3OKN _cell.length_a 45.692 _cell.length_b 82.022 _cell.length_c 130.594 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OKN _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 KDO KDA C2 O2 . O4 HO4 . sing 2 ? 3 3 2 KDO KDO C2 O2 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C KDA 1 C 1 KDA C 3 KDA 3 n C KDO 2 C 2 KDO C 2 KDO 3 n C KDO 3 C 3 KDO C 1 KDO # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 A CYS 23 1_555 A SG CYS 94 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 A SG CYS 139 A CYS 134 1_555 A SG CYS 199 A CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf3 B SG CYS 22 B CYS 22 1_555 B SG CYS 98 B CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf4 B SG CYS 149 B CYS 140 1_555 B SG CYS 204 B CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? covale ? covale1 C O4 KDA . C KDA 1 1_555 C C2 KDO . C KDO 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 sing covale ? covale2 C O4 KDO . C KDO 2 1_555 C C2 KDO . C KDO 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.491 sing metalc ? metalc1 A OE1 GLU 190 A GLU 185 1_555 D ZN ZN . A ZN 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc2 A OE2 GLU 190 A GLU 185 1_555 D ZN ZN . A ZN 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? metalc ? metalc3 A NE2 HIS 194 A HIS 189 1_555 D ZN ZN . A ZN 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3OKN _atom_sites.fract_transf_matrix[1][1] 0.021886 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012192 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007657 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ZN A 1 215 1 ZN ZN . E 5 HOH A 1 219 3 HOH HOH . E 5 HOH A 2 220 5 HOH HOH . E 5 HOH A 3 221 6 HOH HOH . E 5 HOH A 4 222 9 HOH HOH . E 5 HOH A 5 223 14 HOH HOH . E 5 HOH A 6 224 18 HOH HOH . E 5 HOH A 7 225 20 HOH HOH . E 5 HOH A 8 226 21 HOH HOH . E 5 HOH A 9 227 25 HOH HOH . E 5 HOH A 10 228 26 HOH HOH . E 5 HOH A 11 229 27 HOH HOH . E 5 HOH A 12 230 30 HOH HOH . E 5 HOH A 13 231 33 HOH HOH . E 5 HOH A 14 232 35 HOH HOH . E 5 HOH A 15 233 37 HOH HOH . E 5 HOH A 16 234 38 HOH HOH . E 5 HOH A 17 235 39 HOH HOH . E 5 HOH A 18 236 40 HOH HOH . E 5 HOH A 19 237 41 HOH HOH . E 5 HOH A 20 238 45 HOH HOH . E 5 HOH A 21 239 46 HOH HOH . E 5 HOH A 22 240 47 HOH HOH . E 5 HOH A 23 241 48 HOH HOH . E 5 HOH A 24 242 50 HOH HOH . E 5 HOH A 25 243 51 HOH HOH . E 5 HOH A 26 244 55 HOH HOH . E 5 HOH A 27 245 58 HOH HOH . E 5 HOH A 28 246 59 HOH HOH . E 5 HOH A 29 247 60 HOH HOH . E 5 HOH A 30 248 63 HOH HOH . E 5 HOH A 31 249 65 HOH HOH . E 5 HOH A 32 250 66 HOH HOH . E 5 HOH A 33 251 67 HOH HOH . E 5 HOH A 34 252 70 HOH HOH . E 5 HOH A 35 253 71 HOH HOH . E 5 HOH A 36 254 74 HOH HOH . E 5 HOH A 37 255 76 HOH HOH . E 5 HOH A 38 256 80 HOH HOH . E 5 HOH A 39 257 92 HOH HOH . E 5 HOH A 40 258 96 HOH HOH . E 5 HOH A 41 259 97 HOH HOH . E 5 HOH A 42 260 101 HOH HOH . E 5 HOH A 43 261 106 HOH HOH . E 5 HOH A 44 262 107 HOH HOH . E 5 HOH A 45 263 109 HOH HOH . E 5 HOH A 46 264 111 HOH HOH . E 5 HOH A 47 265 112 HOH HOH . E 5 HOH A 48 266 113 HOH HOH . E 5 HOH A 49 267 115 HOH HOH . E 5 HOH A 50 268 116 HOH HOH . E 5 HOH A 51 269 118 HOH HOH . E 5 HOH A 52 270 121 HOH HOH . E 5 HOH A 53 271 123 HOH HOH . E 5 HOH A 54 272 124 HOH HOH . E 5 HOH A 55 273 127 HOH HOH . E 5 HOH A 56 274 128 HOH HOH . E 5 HOH A 57 275 129 HOH HOH . E 5 HOH A 58 276 130 HOH HOH . E 5 HOH A 59 277 131 HOH HOH . E 5 HOH A 60 278 133 HOH HOH . E 5 HOH A 61 279 135 HOH HOH . E 5 HOH A 62 280 140 HOH HOH . E 5 HOH A 63 281 141 HOH HOH . E 5 HOH A 64 282 142 HOH HOH . E 5 HOH A 65 283 143 HOH HOH . E 5 HOH A 66 284 145 HOH HOH . E 5 HOH A 67 285 147 HOH HOH . E 5 HOH A 68 286 153 HOH HOH . E 5 HOH A 69 287 154 HOH HOH . E 5 HOH A 70 288 155 HOH HOH . E 5 HOH A 71 289 158 HOH HOH . E 5 HOH A 72 290 161 HOH HOH . E 5 HOH A 73 291 163 HOH HOH . E 5 HOH A 74 292 164 HOH HOH . E 5 HOH A 75 293 165 HOH HOH . E 5 HOH A 76 294 166 HOH HOH . E 5 HOH A 77 295 167 HOH HOH . E 5 HOH A 78 296 169 HOH HOH . E 5 HOH A 79 297 170 HOH HOH . F 5 HOH B 1 214 1 HOH HOH . F 5 HOH B 2 215 2 HOH HOH . F 5 HOH B 3 216 4 HOH HOH . F 5 HOH B 4 217 7 HOH HOH . F 5 HOH B 5 218 8 HOH HOH . F 5 HOH B 6 219 10 HOH HOH . F 5 HOH B 7 220 11 HOH HOH . F 5 HOH B 8 221 12 HOH HOH . F 5 HOH B 9 222 13 HOH HOH . F 5 HOH B 10 223 15 HOH HOH . F 5 HOH B 11 224 16 HOH HOH . F 5 HOH B 12 225 17 HOH HOH . F 5 HOH B 13 226 19 HOH HOH . F 5 HOH B 14 227 22 HOH HOH . F 5 HOH B 15 228 23 HOH HOH . F 5 HOH B 16 229 24 HOH HOH . F 5 HOH B 17 230 28 HOH HOH . F 5 HOH B 18 231 29 HOH HOH . F 5 HOH B 19 232 31 HOH HOH . F 5 HOH B 20 233 32 HOH HOH . F 5 HOH B 21 234 34 HOH HOH . F 5 HOH B 22 235 36 HOH HOH . F 5 HOH B 23 236 42 HOH HOH . F 5 HOH B 24 237 43 HOH HOH . F 5 HOH B 25 238 44 HOH HOH . F 5 HOH B 26 239 49 HOH HOH . F 5 HOH B 27 240 52 HOH HOH . F 5 HOH B 28 241 53 HOH HOH . F 5 HOH B 29 242 54 HOH HOH . F 5 HOH B 30 243 56 HOH HOH . F 5 HOH B 31 244 57 HOH HOH . F 5 HOH B 32 245 61 HOH HOH . F 5 HOH B 33 246 62 HOH HOH . F 5 HOH B 34 247 64 HOH HOH . F 5 HOH B 35 248 68 HOH HOH . F 5 HOH B 36 249 69 HOH HOH . F 5 HOH B 37 250 72 HOH HOH . F 5 HOH B 38 251 73 HOH HOH . F 5 HOH B 39 252 75 HOH HOH . F 5 HOH B 40 253 77 HOH HOH . F 5 HOH B 41 254 78 HOH HOH . F 5 HOH B 42 255 79 HOH HOH . F 5 HOH B 43 256 81 HOH HOH . F 5 HOH B 44 257 82 HOH HOH . F 5 HOH B 45 258 83 HOH HOH . F 5 HOH B 46 259 84 HOH HOH . F 5 HOH B 47 260 85 HOH HOH . F 5 HOH B 48 261 86 HOH HOH . F 5 HOH B 49 262 87 HOH HOH . F 5 HOH B 50 263 88 HOH HOH . F 5 HOH B 51 264 89 HOH HOH . F 5 HOH B 52 265 90 HOH HOH . F 5 HOH B 53 266 91 HOH HOH . F 5 HOH B 54 267 93 HOH HOH . F 5 HOH B 55 268 94 HOH HOH . F 5 HOH B 56 269 95 HOH HOH . F 5 HOH B 57 270 98 HOH HOH . F 5 HOH B 58 271 99 HOH HOH . F 5 HOH B 59 272 100 HOH HOH . F 5 HOH B 60 273 102 HOH HOH . F 5 HOH B 61 274 103 HOH HOH . F 5 HOH B 62 275 104 HOH HOH . F 5 HOH B 63 276 105 HOH HOH . F 5 HOH B 64 277 108 HOH HOH . F 5 HOH B 65 278 110 HOH HOH . F 5 HOH B 66 279 114 HOH HOH . F 5 HOH B 67 280 117 HOH HOH . F 5 HOH B 68 281 119 HOH HOH . F 5 HOH B 69 282 120 HOH HOH . F 5 HOH B 70 283 122 HOH HOH . F 5 HOH B 71 284 125 HOH HOH . F 5 HOH B 72 285 126 HOH HOH . F 5 HOH B 73 286 132 HOH HOH . F 5 HOH B 74 287 134 HOH HOH . F 5 HOH B 75 288 136 HOH HOH . F 5 HOH B 76 289 137 HOH HOH . F 5 HOH B 77 290 138 HOH HOH . F 5 HOH B 78 291 139 HOH HOH . F 5 HOH B 79 292 144 HOH HOH . F 5 HOH B 80 293 146 HOH HOH . F 5 HOH B 81 294 148 HOH HOH . F 5 HOH B 82 295 149 HOH HOH . F 5 HOH B 83 296 150 HOH HOH . F 5 HOH B 84 297 151 HOH HOH . F 5 HOH B 85 298 152 HOH HOH . F 5 HOH B 86 299 156 HOH HOH . F 5 HOH B 87 300 157 HOH HOH . F 5 HOH B 88 301 159 HOH HOH . F 5 HOH B 89 302 160 HOH HOH . F 5 HOH B 90 303 162 HOH HOH . F 5 HOH B 91 304 168 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x -6.004 _atom_site.Cartn_y 1.399 _atom_site.Cartn_z -65.819 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 52.48 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 215 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #