data_3OKO # _model_server_result.job_id h87fKjANXxQMadvnqnFBiw _model_server_result.datetime_utc '2025-07-26 03:07:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3oko # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":215}' # _entry.id 3OKO # _exptl.entry_id 3OKO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3OKO _cell.length_a 45.441 _cell.length_b 81.394 _cell.length_c 129.009 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OKO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 KDO KDA C2 O2 . O4 HO4 . sing 2 ? 3 3 2 KDO KDO C2 O2 . O8 HO8 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C KDA 1 C 1 KDA C 301 KDA 3 n C KDO 2 C 2 KDO C 302 KDO 3 n C KDO 3 C 3 KDO C 303 KDO # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 B CYS 22 1_555 A SG CYS 98 B CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 149 B CYS 140 1_555 A SG CYS 204 B CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 B SG CYS 23 A CYS 23 1_555 B SG CYS 94 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf4 B SG CYS 139 A CYS 134 1_555 B SG CYS 199 A CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 C O4 KDA . C KDA 1 1_555 C C2 KDO . C KDO 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 ? covale ? covale2 C O8 KDO . C KDO 2 1_555 C C2 KDO . C KDO 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? metalc ? metalc1 B OE2 GLU 190 A GLU 185 1_555 D ZN ZN . A ZN 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.793 ? metalc ? metalc2 B NE2 HIS 194 A HIS 189 1_555 D ZN ZN . A ZN 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.756 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3OKO _atom_sites.fract_transf_matrix[1][1] 0.022007 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012286 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007751 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ZN A 1 215 1 ZN ZN . E 5 HOH B 1 214 1 HOH HOH . E 5 HOH B 2 215 3 HOH HOH . E 5 HOH B 3 216 7 HOH HOH . E 5 HOH B 4 217 8 HOH HOH . E 5 HOH B 5 218 12 HOH HOH . E 5 HOH B 6 219 13 HOH HOH . E 5 HOH B 7 220 14 HOH HOH . E 5 HOH B 8 221 15 HOH HOH . E 5 HOH B 9 222 16 HOH HOH . E 5 HOH B 10 223 18 HOH HOH . E 5 HOH B 11 224 19 HOH HOH . E 5 HOH B 12 225 22 HOH HOH . E 5 HOH B 13 226 24 HOH HOH . E 5 HOH B 14 227 25 HOH HOH . E 5 HOH B 15 228 26 HOH HOH . E 5 HOH B 16 229 30 HOH HOH . E 5 HOH B 17 230 33 HOH HOH . E 5 HOH B 18 231 35 HOH HOH . E 5 HOH B 19 232 36 HOH HOH . E 5 HOH B 20 233 37 HOH HOH . E 5 HOH B 21 234 38 HOH HOH . E 5 HOH B 22 235 40 HOH HOH . E 5 HOH B 23 236 41 HOH HOH . E 5 HOH B 24 237 45 HOH HOH . E 5 HOH B 25 238 46 HOH HOH . E 5 HOH B 26 239 47 HOH HOH . E 5 HOH B 27 240 51 HOH HOH . E 5 HOH B 28 241 52 HOH HOH . E 5 HOH B 29 242 53 HOH HOH . E 5 HOH B 30 243 55 HOH HOH . E 5 HOH B 31 244 56 HOH HOH . E 5 HOH B 32 245 57 HOH HOH . E 5 HOH B 33 246 58 HOH HOH . E 5 HOH B 34 247 61 HOH HOH . E 5 HOH B 35 248 63 HOH HOH . E 5 HOH B 36 249 64 HOH HOH . E 5 HOH B 37 250 65 HOH HOH . E 5 HOH B 38 251 66 HOH HOH . E 5 HOH B 39 252 67 HOH HOH . E 5 HOH B 40 253 68 HOH HOH . E 5 HOH B 41 254 70 HOH HOH . E 5 HOH B 42 255 72 HOH HOH . E 5 HOH B 43 256 74 HOH HOH . E 5 HOH B 44 257 77 HOH HOH . E 5 HOH B 45 258 80 HOH HOH . E 5 HOH B 46 259 82 HOH HOH . E 5 HOH B 47 260 83 HOH HOH . E 5 HOH B 48 261 84 HOH HOH . E 5 HOH B 49 262 87 HOH HOH . E 5 HOH B 50 263 88 HOH HOH . E 5 HOH B 51 264 89 HOH HOH . E 5 HOH B 52 265 90 HOH HOH . E 5 HOH B 53 266 91 HOH HOH . E 5 HOH B 54 267 93 HOH HOH . E 5 HOH B 55 268 94 HOH HOH . E 5 HOH B 56 269 98 HOH HOH . E 5 HOH B 57 270 99 HOH HOH . E 5 HOH B 58 271 101 HOH HOH . E 5 HOH B 59 272 103 HOH HOH . E 5 HOH B 60 273 105 HOH HOH . E 5 HOH B 61 274 108 HOH HOH . E 5 HOH B 62 275 109 HOH HOH . E 5 HOH B 63 276 111 HOH HOH . E 5 HOH B 64 277 112 HOH HOH . E 5 HOH B 65 278 114 HOH HOH . E 5 HOH B 66 279 117 HOH HOH . E 5 HOH B 67 280 119 HOH HOH . E 5 HOH B 68 281 121 HOH HOH . E 5 HOH B 69 282 122 HOH HOH . E 5 HOH B 70 283 124 HOH HOH . E 5 HOH B 71 284 125 HOH HOH . E 5 HOH B 72 285 131 HOH HOH . E 5 HOH B 73 286 132 HOH HOH . E 5 HOH B 74 287 133 HOH HOH . F 5 HOH A 1 95 95 HOH HOH . F 5 HOH A 2 216 2 HOH HOH . F 5 HOH A 3 217 4 HOH HOH . F 5 HOH A 4 218 5 HOH HOH . F 5 HOH A 5 219 6 HOH HOH . F 5 HOH A 6 220 9 HOH HOH . F 5 HOH A 7 221 10 HOH HOH . F 5 HOH A 8 222 11 HOH HOH . F 5 HOH A 9 223 17 HOH HOH . F 5 HOH A 10 224 20 HOH HOH . F 5 HOH A 11 225 21 HOH HOH . F 5 HOH A 12 226 23 HOH HOH . F 5 HOH A 13 227 27 HOH HOH . F 5 HOH A 14 228 28 HOH HOH . F 5 HOH A 15 229 29 HOH HOH . F 5 HOH A 16 230 31 HOH HOH . F 5 HOH A 17 231 32 HOH HOH . F 5 HOH A 18 232 34 HOH HOH . F 5 HOH A 19 233 39 HOH HOH . F 5 HOH A 20 234 42 HOH HOH . F 5 HOH A 21 235 43 HOH HOH . F 5 HOH A 22 236 44 HOH HOH . F 5 HOH A 23 237 48 HOH HOH . F 5 HOH A 24 238 49 HOH HOH . F 5 HOH A 25 239 50 HOH HOH . F 5 HOH A 26 240 54 HOH HOH . F 5 HOH A 27 241 59 HOH HOH . F 5 HOH A 28 242 60 HOH HOH . F 5 HOH A 29 243 62 HOH HOH . F 5 HOH A 30 244 69 HOH HOH . F 5 HOH A 31 245 71 HOH HOH . F 5 HOH A 32 246 73 HOH HOH . F 5 HOH A 33 247 75 HOH HOH . F 5 HOH A 34 248 76 HOH HOH . F 5 HOH A 35 249 78 HOH HOH . F 5 HOH A 36 250 79 HOH HOH . F 5 HOH A 37 251 81 HOH HOH . F 5 HOH A 38 252 85 HOH HOH . F 5 HOH A 39 253 86 HOH HOH . F 5 HOH A 40 254 92 HOH HOH . F 5 HOH A 41 255 96 HOH HOH . F 5 HOH A 42 256 97 HOH HOH . F 5 HOH A 43 257 100 HOH HOH . F 5 HOH A 44 258 102 HOH HOH . F 5 HOH A 45 259 104 HOH HOH . F 5 HOH A 46 260 106 HOH HOH . F 5 HOH A 47 261 107 HOH HOH . F 5 HOH A 48 262 110 HOH HOH . F 5 HOH A 49 263 113 HOH HOH . F 5 HOH A 50 264 115 HOH HOH . F 5 HOH A 51 265 116 HOH HOH . F 5 HOH A 52 266 118 HOH HOH . F 5 HOH A 53 267 120 HOH HOH . F 5 HOH A 54 268 123 HOH HOH . F 5 HOH A 55 269 126 HOH HOH . F 5 HOH A 56 270 127 HOH HOH . F 5 HOH A 57 271 128 HOH HOH . F 5 HOH A 58 272 129 HOH HOH . F 5 HOH A 59 273 130 HOH HOH . F 5 HOH A 60 274 134 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 26.508 _atom_site.Cartn_y -1.731 _atom_site.Cartn_z -65.529 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 52.37 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 215 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 1238 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #