data_3OLF # _model_server_result.job_id 6wOczmnYThxLYJMxQBtT3g _model_server_result.datetime_utc '2024-11-23 15:01:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3olf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1}' # _entry.id 3OLF # _exptl.entry_id 3OLF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 537.985 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-({(2S)-2-[2-(4-chlorophenyl)-5,6-difluoro-1H-benzimidazol-1-yl]-2-cyclohexylacetyl}amino)-3-methylbenzoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3OLF _cell.length_a 72.28 _cell.length_b 84.86 _cell.length_c 191.56 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OLF _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G,H 1 1 C,D,F,I,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C29 H26 Cl F2 N3 O3' _chem_comp.formula_weight 537.985 _chem_comp.id OLF _chem_comp.mon_nstd_flag . _chem_comp.name '4-({(2S)-2-[2-(4-chlorophenyl)-5,6-difluoro-1H-benzimidazol-1-yl]-2-cyclohexylacetyl}amino)-3-methylbenzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 OLF sing 237 n y N1 C4 OLF sing 238 n y N1 C7 OLF sing 239 n n C2 N3 OLF doub 240 n y C2 C14 OLF sing 241 n y N3 C5 OLF sing 242 n y C4 C5 OLF doub 243 n y C4 C8 OLF sing 244 n y C5 C10 OLF sing 245 n y C6 C7 OLF sing 246 n n C6 N9 OLF sing 247 n n C6 O19 OLF doub 248 n n C7 C23 OLF sing 249 n n C8 C11 OLF doub 250 n y N9 C12 OLF sing 251 n n C10 C15 OLF doub 252 n y C11 C15 OLF sing 253 n y C11 F26 OLF sing 254 n n C12 C18 OLF doub 255 n y C12 C21 OLF sing 256 n y C13 C16 OLF sing 257 n n C13 O20 OLF doub 258 n n C13 O28 OLF sing 259 n n C14 C24 OLF doub 260 n y C14 C25 OLF sing 261 n y C15 F27 OLF sing 262 n n C16 C17 OLF doub 263 n y C16 C22 OLF sing 264 n y C17 C18 OLF sing 265 n y C18 C33 OLF sing 266 n n C21 C22 OLF doub 267 n y C23 C34 OLF sing 268 n n C23 C35 OLF sing 269 n n C24 C30 OLF sing 270 n y C25 C31 OLF doub 271 n y C29 C30 OLF doub 272 n y C29 C31 OLF sing 273 n y C29 CL32 OLF sing 274 n n C34 C37 OLF sing 275 n n C35 C36 OLF sing 276 n n C36 C38 OLF sing 277 n n C37 C38 OLF sing 278 n n C7 H7 OLF sing 279 n n C8 H8 OLF sing 280 n n N9 HN9 OLF sing 281 n n C10 H10 OLF sing 282 n n C17 H17 OLF sing 283 n n C21 H21 OLF sing 284 n n C22 H22 OLF sing 285 n n C23 H23 OLF sing 286 n n C24 H24 OLF sing 287 n n C25 H25 OLF sing 288 n n C30 H30 OLF sing 289 n n C31 H31 OLF sing 290 n n C33 H33 OLF sing 291 n n C33 H33A OLF sing 292 n n C33 H33B OLF sing 293 n n C34 H34 OLF sing 294 n n C34 H34A OLF sing 295 n n C35 H35 OLF sing 296 n n C35 H35A OLF sing 297 n n C36 H36 OLF sing 298 n n C36 H36A OLF sing 299 n n C37 H37 OLF sing 300 n n C37 H37A OLF sing 301 n n C38 H38 OLF sing 302 n n C38 H38A OLF sing 303 n n O28 H28 OLF sing 304 n n # _atom_sites.entry_id 3OLF _atom_sites.fract_transf_matrix[1][1] 0.013835 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011784 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00522 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 OLF A 1 1 1 OLF UNL . F 3 OLF C 1 2 2 OLF UNL . G 4 HOH A 1 2 2 HOH HOH . G 4 HOH A 2 3 3 HOH HOH . G 4 HOH A 3 4 4 HOH HOH . G 4 HOH A 4 5 5 HOH HOH . G 4 HOH A 5 6 6 HOH HOH . G 4 HOH A 6 7 7 HOH HOH . G 4 HOH A 7 9 9 HOH HOH . G 4 HOH A 8 10 10 HOH HOH . G 4 HOH A 9 14 14 HOH HOH . G 4 HOH A 10 15 15 HOH HOH . G 4 HOH A 11 17 17 HOH HOH . G 4 HOH A 12 21 21 HOH HOH . G 4 HOH A 13 22 22 HOH HOH . G 4 HOH A 14 23 23 HOH HOH . G 4 HOH A 15 24 24 HOH HOH . G 4 HOH A 16 25 25 HOH HOH . G 4 HOH A 17 27 27 HOH HOH . G 4 HOH A 18 29 29 HOH HOH . G 4 HOH A 19 30 30 HOH HOH . G 4 HOH A 20 31 31 HOH HOH . G 4 HOH A 21 32 32 HOH HOH . G 4 HOH A 22 33 33 HOH HOH . G 4 HOH A 23 34 34 HOH HOH . G 4 HOH A 24 36 36 HOH HOH . G 4 HOH A 25 37 37 HOH HOH . G 4 HOH A 26 39 39 HOH HOH . G 4 HOH A 27 40 40 HOH HOH . G 4 HOH A 28 42 42 HOH HOH . G 4 HOH A 29 43 43 HOH HOH . G 4 HOH A 30 46 46 HOH HOH . G 4 HOH A 31 47 47 HOH HOH . G 4 HOH A 32 48 48 HOH HOH . G 4 HOH A 33 50 50 HOH HOH . G 4 HOH A 34 52 52 HOH HOH . G 4 HOH A 35 53 53 HOH HOH . G 4 HOH A 36 54 54 HOH HOH . G 4 HOH A 37 57 57 HOH HOH . G 4 HOH A 38 63 63 HOH HOH . G 4 HOH A 39 65 65 HOH HOH . G 4 HOH A 40 66 66 HOH HOH . G 4 HOH A 41 67 67 HOH HOH . G 4 HOH A 42 68 68 HOH HOH . G 4 HOH A 43 70 70 HOH HOH . G 4 HOH A 44 71 71 HOH HOH . G 4 HOH A 45 75 75 HOH HOH . G 4 HOH A 46 78 78 HOH HOH . G 4 HOH A 47 80 80 HOH HOH . G 4 HOH A 48 81 81 HOH HOH . G 4 HOH A 49 82 82 HOH HOH . G 4 HOH A 50 83 83 HOH HOH . G 4 HOH A 51 84 84 HOH HOH . G 4 HOH A 52 86 86 HOH HOH . G 4 HOH A 53 88 88 HOH HOH . G 4 HOH A 54 90 90 HOH HOH . G 4 HOH A 55 91 91 HOH HOH . G 4 HOH A 56 93 93 HOH HOH . G 4 HOH A 57 94 94 HOH HOH . G 4 HOH A 58 95 95 HOH HOH . G 4 HOH A 59 97 97 HOH HOH . G 4 HOH A 60 98 98 HOH HOH . G 4 HOH A 61 99 99 HOH HOH . G 4 HOH A 62 100 100 HOH HOH . G 4 HOH A 63 101 101 HOH HOH . G 4 HOH A 64 102 102 HOH HOH . G 4 HOH A 65 105 105 HOH HOH . G 4 HOH A 66 106 106 HOH HOH . G 4 HOH A 67 108 108 HOH HOH . G 4 HOH A 68 110 110 HOH HOH . G 4 HOH A 69 116 116 HOH HOH . G 4 HOH A 70 117 117 HOH HOH . G 4 HOH A 71 120 120 HOH HOH . G 4 HOH A 72 122 122 HOH HOH . G 4 HOH A 73 123 123 HOH HOH . G 4 HOH A 74 125 125 HOH HOH . G 4 HOH A 75 126 126 HOH HOH . G 4 HOH A 76 128 128 HOH HOH . G 4 HOH A 77 133 133 HOH HOH . G 4 HOH A 78 135 135 HOH HOH . G 4 HOH A 79 137 137 HOH HOH . G 4 HOH A 80 138 138 HOH HOH . G 4 HOH A 81 139 139 HOH HOH . G 4 HOH A 82 140 140 HOH HOH . G 4 HOH A 83 141 141 HOH HOH . G 4 HOH A 84 147 147 HOH HOH . G 4 HOH A 85 148 148 HOH HOH . G 4 HOH A 86 149 149 HOH HOH . G 4 HOH A 87 151 151 HOH HOH . G 4 HOH A 88 152 152 HOH HOH . G 4 HOH A 89 153 153 HOH HOH . G 4 HOH A 90 155 155 HOH HOH . G 4 HOH A 91 156 156 HOH HOH . G 4 HOH A 92 161 161 HOH HOH . G 4 HOH A 93 162 162 HOH HOH . G 4 HOH A 94 163 163 HOH HOH . G 4 HOH A 95 164 164 HOH HOH . G 4 HOH A 96 165 165 HOH HOH . G 4 HOH A 97 167 167 HOH HOH . G 4 HOH A 98 168 168 HOH HOH . G 4 HOH A 99 169 169 HOH HOH . G 4 HOH A 100 170 170 HOH HOH . G 4 HOH A 101 173 173 HOH HOH . G 4 HOH A 102 177 177 HOH HOH . G 4 HOH A 103 178 178 HOH HOH . G 4 HOH A 104 182 182 HOH HOH . G 4 HOH A 105 183 183 HOH HOH . G 4 HOH A 106 184 184 HOH HOH . G 4 HOH A 107 186 186 HOH HOH . G 4 HOH A 108 188 188 HOH HOH . G 4 HOH A 109 191 191 HOH HOH . G 4 HOH A 110 477 1 HOH HOH . H 4 HOH B 1 8 8 HOH HOH . H 4 HOH B 2 92 92 HOH HOH . H 4 HOH B 3 115 115 HOH HOH . H 4 HOH B 4 130 130 HOH HOH . H 4 HOH B 5 143 143 HOH HOH . H 4 HOH B 6 159 159 HOH HOH . H 4 HOH B 7 174 174 HOH HOH . H 4 HOH B 8 185 185 HOH HOH . I 4 HOH C 1 11 11 HOH HOH . I 4 HOH C 2 12 12 HOH HOH . I 4 HOH C 3 13 13 HOH HOH . I 4 HOH C 4 16 16 HOH HOH . I 4 HOH C 5 18 18 HOH HOH . I 4 HOH C 6 19 19 HOH HOH . I 4 HOH C 7 20 20 HOH HOH . I 4 HOH C 8 26 26 HOH HOH . I 4 HOH C 9 28 28 HOH HOH . I 4 HOH C 10 35 35 HOH HOH . I 4 HOH C 11 38 38 HOH HOH . I 4 HOH C 12 41 41 HOH HOH . I 4 HOH C 13 44 44 HOH HOH . I 4 HOH C 14 45 45 HOH HOH . I 4 HOH C 15 49 49 HOH HOH . I 4 HOH C 16 51 51 HOH HOH . I 4 HOH C 17 55 55 HOH HOH . I 4 HOH C 18 56 56 HOH HOH . I 4 HOH C 19 58 58 HOH HOH . I 4 HOH C 20 59 59 HOH HOH . I 4 HOH C 21 60 60 HOH HOH . I 4 HOH C 22 61 61 HOH HOH . I 4 HOH C 23 62 62 HOH HOH . I 4 HOH C 24 64 64 HOH HOH . I 4 HOH C 25 72 72 HOH HOH . I 4 HOH C 26 73 73 HOH HOH . I 4 HOH C 27 74 74 HOH HOH . I 4 HOH C 28 76 76 HOH HOH . I 4 HOH C 29 77 77 HOH HOH . I 4 HOH C 30 79 79 HOH HOH . I 4 HOH C 31 85 85 HOH HOH . I 4 HOH C 32 87 87 HOH HOH . I 4 HOH C 33 89 89 HOH HOH . I 4 HOH C 34 96 96 HOH HOH . I 4 HOH C 35 103 103 HOH HOH . I 4 HOH C 36 104 104 HOH HOH . I 4 HOH C 37 107 107 HOH HOH . I 4 HOH C 38 109 109 HOH HOH . I 4 HOH C 39 111 111 HOH HOH . I 4 HOH C 40 112 112 HOH HOH . I 4 HOH C 41 113 113 HOH HOH . I 4 HOH C 42 114 114 HOH HOH . I 4 HOH C 43 118 118 HOH HOH . I 4 HOH C 44 119 119 HOH HOH . I 4 HOH C 45 124 124 HOH HOH . I 4 HOH C 46 127 127 HOH HOH . I 4 HOH C 47 129 129 HOH HOH . I 4 HOH C 48 131 131 HOH HOH . I 4 HOH C 49 132 132 HOH HOH . I 4 HOH C 50 134 134 HOH HOH . I 4 HOH C 51 136 136 HOH HOH . I 4 HOH C 52 142 142 HOH HOH . I 4 HOH C 53 144 144 HOH HOH . I 4 HOH C 54 145 145 HOH HOH . I 4 HOH C 55 146 146 HOH HOH . I 4 HOH C 56 150 150 HOH HOH . I 4 HOH C 57 154 154 HOH HOH . I 4 HOH C 58 157 157 HOH HOH . I 4 HOH C 59 158 158 HOH HOH . I 4 HOH C 60 160 160 HOH HOH . I 4 HOH C 61 166 166 HOH HOH . I 4 HOH C 62 171 171 HOH HOH . I 4 HOH C 63 172 172 HOH HOH . I 4 HOH C 64 175 175 HOH HOH . I 4 HOH C 65 176 176 HOH HOH . I 4 HOH C 66 179 179 HOH HOH . I 4 HOH C 67 180 180 HOH HOH . I 4 HOH C 68 181 181 HOH HOH . I 4 HOH C 69 187 187 HOH HOH . I 4 HOH C 70 189 189 HOH HOH . I 4 HOH C 71 190 190 HOH HOH . I 4 HOH C 72 192 192 HOH HOH . I 4 HOH C 73 193 193 HOH HOH . J 4 HOH D 1 69 69 HOH HOH . J 4 HOH D 2 121 121 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 OLF . . . E 3 12.923 24.367 3.429 1 26.85 ? N1 OLF 1 A 1 HETATM 2 C C2 OLF . . . E 3 13.79 25.059 2.63 1 25.69 ? C2 OLF 1 A 1 HETATM 3 N N3 OLF . . . E 3 13.191 26.064 2.056 1 23.65 ? N3 OLF 1 A 1 HETATM 4 C C4 OLF . . . E 3 11.705 24.97 3.319 1 24.83 ? C4 OLF 1 A 1 HETATM 5 C C5 OLF . . . E 3 11.895 26.053 2.433 1 23.65 ? C5 OLF 1 A 1 HETATM 6 C C6 OLF . . . E 3 12.347 22.01 3.891 1 28.35 ? C6 OLF 1 A 1 HETATM 7 C C7 OLF . . . E 3 13.263 23.167 4.209 1 29.31 ? C7 OLF 1 A 1 HETATM 8 C C8 OLF . . . E 3 10.464 24.698 3.869 1 27.92 ? C8 OLF 1 A 1 HETATM 9 N N9 OLF . . . E 3 11.995 21.863 2.586 1 26.46 ? N9 OLF 1 A 1 HETATM 10 C C10 OLF . . . E 3 10.811 26.877 2.123 1 28.04 ? C10 OLF 1 A 1 HETATM 11 C C11 OLF . . . E 3 9.409 25.534 3.558 1 29.89 ? C11 OLF 1 A 1 HETATM 12 C C12 OLF . . . E 3 11.163 20.848 2.097 1 26.04 ? C12 OLF 1 A 1 HETATM 13 C C13 OLF . . . E 3 8.561 17.815 0.556 1 29.97 ? C13 OLF 1 A 1 HETATM 14 C C14 OLF . . . E 3 15.195 24.685 2.471 1 28.93 ? C14 OLF 1 A 1 HETATM 15 C C15 OLF . . . E 3 9.588 26.596 2.69 1 28.58 ? C15 OLF 1 A 1 HETATM 16 C C16 OLF . . . E 3 9.456 18.869 1.097 1 26.81 ? C16 OLF 1 A 1 HETATM 17 C C17 OLF . . . E 3 10.797 18.569 1.386 1 27.45 ? C17 OLF 1 A 1 HETATM 18 C C18 OLF . . . E 3 11.66 19.559 1.862 1 26.76 ? C18 OLF 1 A 1 HETATM 19 O O19 OLF . . . E 3 11.928 21.255 4.752 1 26.3 ? O19 OLF 1 A 1 HETATM 20 O O20 OLF . . . E 3 7.449 18.072 0.149 1 30.43 ? O20 OLF 1 A 1 HETATM 21 C C21 OLF . . . E 3 9.823 21.15 1.807 1 27.59 ? C21 OLF 1 A 1 HETATM 22 C C22 OLF . . . E 3 8.98 20.168 1.316 1 25.61 ? C22 OLF 1 A 1 HETATM 23 C C23 OLF . . . E 3 13.703 23.456 5.657 1 32.29 ? C23 OLF 1 A 1 HETATM 24 C C24 OLF . . . E 3 16.193 25.472 3.054 1 30.31 ? C24 OLF 1 A 1 HETATM 25 C C25 OLF . . . E 3 15.526 23.499 1.803 1 30.76 ? C25 OLF 1 A 1 HETATM 26 F F26 OLF . . . E 3 8.192 25.339 4.1 1 30.09 ? F26 OLF 1 A 1 HETATM 27 F F27 OLF . . . E 3 8.528 27.352 2.419 1 29.77 ? F27 OLF 1 A 1 HETATM 28 O O28 OLF . . . E 3 8.982 16.538 0.513 1 30.28 ? O28 OLF 1 A 1 HETATM 29 C C29 OLF . . . E 3 17.853 23.935 2.242 1 33.42 ? C29 OLF 1 A 1 HETATM 30 C C30 OLF . . . E 3 17.515 25.098 2.919 1 30.18 ? C30 OLF 1 A 1 HETATM 31 C C31 OLF . . . E 3 16.855 23.124 1.698 1 32.3 ? C31 OLF 1 A 1 HETATM 32 CL CL32 OLF . . . E 3 19.531 23.481 2.106 1 35.48 ? CL32 OLF 1 A 1 HETATM 33 C C33 OLF . . . E 3 13.108 19.206 2.171 1 24.7 ? C33 OLF 1 A 1 HETATM 34 C C34 OLF . . . E 3 13.649 24.929 6.068 1 32.75 ? C34 OLF 1 A 1 HETATM 35 C C35 OLF . . . E 3 13.148 22.542 6.745 1 35.61 ? C35 OLF 1 A 1 HETATM 36 C C36 OLF . . . E 3 13.919 22.744 8.057 1 33.77 ? C36 OLF 1 A 1 HETATM 37 C C37 OLF . . . E 3 14.46 25.135 7.362 1 34.43 ? C37 OLF 1 A 1 HETATM 38 C C38 OLF . . . E 3 13.959 24.216 8.478 1 33.49 ? C38 OLF 1 A 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 82 _model_server_stats.query_time_ms 489 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 38 #