data_3OLO
#
_model_server_result.job_id            mzJ2WrA5kVOslG5Z3m7Vow 
_model_server_result.datetime_utc      '2024-11-05 00:10:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3olo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":116}' 
#
_entry.id    3OLO 
#
_exptl.entry_id    3OLO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3OLO 
_cell.length_a            85.43 
_cell.length_b            85.43 
_cell.length_c            67.84 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3OLO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 software_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1,2 
B,D,F 2 1,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 85.43 85.43 33.92 
3 'crystal symmetry operation' 8_666 -y+1,-x+1,-z+3/2 0 -1 0 -1 0 0 0 0 -1 85.43 85.43 101.76 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ARG 44 A ARG 41 1_555 A N MSE 45 A MSE 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale2 A C MSE 45 A MSE 42 1_555 A N THR 46 A THR 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? 
covale ? covale3 A C SER 55 A SER 52 1_555 A N MSE 56 A MSE 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale4 A C MSE 56 A MSE 53 1_555 A N ASN 57 A ASN 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale5 A C GLU 96 A GLU 93 1_555 A N MSE 97 A MSE 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale6 A C MSE 97 A MSE 94 1_555 A N SER 98 A SER 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale7 B C ARG 44 B ARG 41 1_555 B N MSE 45 B MSE 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale8 B C MSE 45 B MSE 42 1_555 B N THR 46 B THR 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale9 B C SER 55 B SER 52 1_555 B N MSE 56 B MSE 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale10 B C MSE 56 B MSE 53 1_555 B N ASN 57 B ASN 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale11 B C GLU 96 B GLU 93 1_555 B N MSE 97 B MSE 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale12 B C MSE 97 B MSE 94 1_555 B N SER 98 B SER 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
_atom_sites.entry_id                     3OLO 
_atom_sites.fract_transf_matrix[1][1]    0.011706 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011706 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01474 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 116 1 GOL GOL . 
D 2 GOL B 1 116 1 GOL GOL . 
E 3 HOH A 1 117 1 HOH HOH . 
E 3 HOH A 2 118 5 HOH HOH . 
E 3 HOH A 3 119 10 HOH HOH . 
E 3 HOH A 4 120 11 HOH HOH . 
E 3 HOH A 5 121 15 HOH HOH . 
E 3 HOH A 6 122 16 HOH HOH . 
E 3 HOH A 7 123 19 HOH HOH . 
E 3 HOH A 8 124 20 HOH HOH . 
E 3 HOH A 9 125 22 HOH HOH . 
E 3 HOH A 10 126 23 HOH HOH . 
E 3 HOH A 11 127 24 HOH HOH . 
E 3 HOH A 12 128 25 HOH HOH . 
E 3 HOH A 13 129 27 HOH HOH . 
E 3 HOH A 14 130 29 HOH HOH . 
E 3 HOH A 15 131 31 HOH HOH . 
E 3 HOH A 16 132 34 HOH HOH . 
E 3 HOH A 17 133 35 HOH HOH . 
E 3 HOH A 18 134 36 HOH HOH . 
E 3 HOH A 19 135 39 HOH HOH . 
E 3 HOH A 20 136 40 HOH HOH . 
E 3 HOH A 21 137 41 HOH HOH . 
E 3 HOH A 22 138 42 HOH HOH . 
E 3 HOH A 23 139 43 HOH HOH . 
E 3 HOH A 24 140 44 HOH HOH . 
E 3 HOH A 25 141 47 HOH HOH . 
E 3 HOH A 26 142 49 HOH HOH . 
E 3 HOH A 27 143 51 HOH HOH . 
E 3 HOH A 28 144 53 HOH HOH . 
F 3 HOH B 1 117 2 HOH HOH . 
F 3 HOH B 2 118 3 HOH HOH . 
F 3 HOH B 3 119 4 HOH HOH . 
F 3 HOH B 4 120 6 HOH HOH . 
F 3 HOH B 5 121 7 HOH HOH . 
F 3 HOH B 6 122 8 HOH HOH . 
F 3 HOH B 7 123 9 HOH HOH . 
F 3 HOH B 8 124 12 HOH HOH . 
F 3 HOH B 9 125 13 HOH HOH . 
F 3 HOH B 10 126 14 HOH HOH . 
F 3 HOH B 11 127 17 HOH HOH . 
F 3 HOH B 12 128 18 HOH HOH . 
F 3 HOH B 13 129 21 HOH HOH . 
F 3 HOH B 14 130 26 HOH HOH . 
F 3 HOH B 15 131 28 HOH HOH . 
F 3 HOH B 16 132 30 HOH HOH . 
F 3 HOH B 17 133 32 HOH HOH . 
F 3 HOH B 18 134 33 HOH HOH . 
F 3 HOH B 19 135 37 HOH HOH . 
F 3 HOH B 20 136 38 HOH HOH . 
F 3 HOH B 21 137 45 HOH HOH . 
F 3 HOH B 22 138 46 HOH HOH . 
F 3 HOH B 23 139 48 HOH HOH . 
F 3 HOH B 24 140 50 HOH HOH . 
F 3 HOH B 25 141 52 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 2 62.6 33.699 7.708 1 61.73 ? C1 GOL 116 A 1 
HETATM 2 O O1 GOL . . . C 2 63.147 33.037 6.588 1 62.81 ? O1 GOL 116 A 1 
HETATM 3 C C2 GOL . . . C 2 61.189 33.196 8.004 1 63.59 ? C2 GOL 116 A 1 
HETATM 4 O O2 GOL . . . C 2 61.046 31.827 7.673 1 56.15 ? O2 GOL 116 A 1 
HETATM 5 C C3 GOL . . . C 2 60.162 34.036 7.248 1 63.51 ? C3 GOL 116 A 1 
HETATM 6 O O3 GOL . . . C 2 59.234 34.574 8.169 1 63.42 ? O3 GOL 116 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          28 
_model_server_stats.element_count           6 
#