data_3OLW # _model_server_result.job_id kvq3pc2BbEp9YMSAZUSICA _model_server_result.datetime_utc '2024-10-11 12:30:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3olw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":134}' # _entry.id 3OLW # _exptl.entry_id 3OLW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3OLW _cell.length_a 54.033 _cell.length_b 53.731 _cell.length_c 161.804 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OLW _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,T 1 1 B,L,M,N,O,P,Q,R,S,U 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 N N N ? 4 O N N ? 4 P N N ? 4 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 13 A ASP 13 1_555 D MN MN . A MN 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc2 A OD1 ASP 57 A ASP 57 1_555 C BE BEF . A BEF 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.837 ? metalc ? metalc3 A OD2 ASP 57 A ASP 57 1_555 D MN MN . A MN 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc4 A O ASN 59 A ASN 59 1_555 D MN MN . A MN 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc5 C F2 BEF . A BEF 130 1_555 D MN MN . A MN 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc6 D MN MN . A MN 131 1_555 T O HOH . A HOH 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc7 D MN MN . A MN 131 1_555 T O HOH . A HOH 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc8 B OD1 ASP 13 B ASP 13 1_555 M MN MN . B MN 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc9 B OD1 ASP 57 B ASP 57 1_555 L BE BEF . B BEF 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.892 ? metalc ? metalc10 B OD2 ASP 57 B ASP 57 1_555 M MN MN . B MN 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc11 B O ASN 59 B ASN 59 1_555 M MN MN . B MN 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc12 L F2 BEF . B BEF 130 1_555 M MN MN . B MN 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc13 M MN MN . B MN 131 1_555 U O HOH . B HOH 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc14 M MN MN . B MN 131 1_555 U O HOH . B HOH 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 119 n n C1 C2 GOL sing 120 n n C1 H11 GOL sing 121 n n C1 H12 GOL sing 122 n n O1 HO1 GOL sing 123 n n C2 O2 GOL sing 124 n n C2 C3 GOL sing 125 n n C2 H2 GOL sing 126 n n O2 HO2 GOL sing 127 n n C3 O3 GOL sing 128 n n C3 H31 GOL sing 129 n n C3 H32 GOL sing 130 n n O3 HO3 GOL sing 131 n n # _atom_sites.entry_id 3OLW _atom_sites.fract_transf_matrix[1][1] 0.018507 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018611 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00618 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BEF A 1 130 130 BEF BEF . D 3 MN A 1 131 131 MN MN . E 4 GOL A 1 132 1 GOL GOL . F 4 GOL A 1 133 3 GOL GOL . G 4 GOL A 1 134 4 GOL GOL . H 4 GOL A 1 135 7 GOL GOL . I 3 MN A 1 136 2 MN MN . J 5 CL A 1 137 1 CL CL . K 5 CL A 1 138 2 CL CL . L 2 BEF B 1 130 130 BEF BEF . M 3 MN B 1 131 131 MN MN . N 4 GOL B 1 132 2 GOL GOL . O 4 GOL B 1 133 5 GOL GOL . P 4 GOL B 1 134 6 GOL GOL . Q 4 GOL B 1 135 8 GOL GOL . R 6 SO4 B 1 136 1 SO4 SO4 . S 3 MN B 1 137 1 MN MN . T 7 HOH A 1 139 139 HOH HOH . T 7 HOH A 2 140 1 HOH HOH . T 7 HOH A 3 141 2 HOH HOH . T 7 HOH A 4 142 142 HOH HOH . T 7 HOH A 5 143 3 HOH HOH . T 7 HOH A 6 144 6 HOH HOH . T 7 HOH A 7 145 13 HOH HOH . T 7 HOH A 8 146 14 HOH HOH . T 7 HOH A 9 147 147 HOH HOH . T 7 HOH A 10 148 148 HOH HOH . T 7 HOH A 11 149 149 HOH HOH . T 7 HOH A 12 150 150 HOH HOH . T 7 HOH A 13 151 15 HOH HOH . T 7 HOH A 14 152 152 HOH HOH . T 7 HOH A 15 153 153 HOH HOH . T 7 HOH A 16 154 154 HOH HOH . T 7 HOH A 17 155 16 HOH HOH . T 7 HOH A 18 156 17 HOH HOH . T 7 HOH A 19 157 19 HOH HOH . T 7 HOH A 20 158 20 HOH HOH . T 7 HOH A 21 159 159 HOH HOH . T 7 HOH A 22 160 21 HOH HOH . T 7 HOH A 23 161 22 HOH HOH . T 7 HOH A 24 162 23 HOH HOH . T 7 HOH A 25 163 24 HOH HOH . T 7 HOH A 26 164 164 HOH HOH . T 7 HOH A 27 165 165 HOH HOH . T 7 HOH A 28 166 26 HOH HOH . T 7 HOH A 29 167 167 HOH HOH . T 7 HOH A 30 168 27 HOH HOH . T 7 HOH A 31 169 28 HOH HOH . T 7 HOH A 32 170 29 HOH HOH . T 7 HOH A 33 171 171 HOH HOH . T 7 HOH A 34 172 30 HOH HOH . T 7 HOH A 35 173 173 HOH HOH . T 7 HOH A 36 174 174 HOH HOH . T 7 HOH A 37 175 31 HOH HOH . T 7 HOH A 38 176 32 HOH HOH . T 7 HOH A 39 177 177 HOH HOH . T 7 HOH A 40 178 178 HOH HOH . T 7 HOH A 41 179 39 HOH HOH . T 7 HOH A 42 180 180 HOH HOH . T 7 HOH A 43 181 41 HOH HOH . T 7 HOH A 44 182 43 HOH HOH . T 7 HOH A 45 183 44 HOH HOH . T 7 HOH A 46 184 184 HOH HOH . T 7 HOH A 47 185 46 HOH HOH . T 7 HOH A 48 186 186 HOH HOH . T 7 HOH A 49 187 47 HOH HOH . T 7 HOH A 50 188 188 HOH HOH . T 7 HOH A 51 189 189 HOH HOH . T 7 HOH A 52 190 48 HOH HOH . T 7 HOH A 53 191 191 HOH HOH . T 7 HOH A 54 192 50 HOH HOH . T 7 HOH A 55 193 193 HOH HOH . T 7 HOH A 56 194 194 HOH HOH . T 7 HOH A 57 195 195 HOH HOH . T 7 HOH A 58 196 51 HOH HOH . T 7 HOH A 59 197 197 HOH HOH . T 7 HOH A 60 198 52 HOH HOH . T 7 HOH A 61 199 54 HOH HOH . T 7 HOH A 62 200 200 HOH HOH . T 7 HOH A 63 201 201 HOH HOH . T 7 HOH A 64 202 202 HOH HOH . T 7 HOH A 65 203 203 HOH HOH . T 7 HOH A 66 204 55 HOH HOH . T 7 HOH A 67 205 57 HOH HOH . T 7 HOH A 68 206 58 HOH HOH . T 7 HOH A 69 207 207 HOH HOH . T 7 HOH A 70 208 59 HOH HOH . T 7 HOH A 71 209 61 HOH HOH . T 7 HOH A 72 210 210 HOH HOH . T 7 HOH A 73 211 62 HOH HOH . T 7 HOH A 74 212 63 HOH HOH . T 7 HOH A 75 213 64 HOH HOH . T 7 HOH A 76 214 214 HOH HOH . T 7 HOH A 77 215 65 HOH HOH . T 7 HOH A 78 216 66 HOH HOH . T 7 HOH A 79 217 217 HOH HOH . T 7 HOH A 80 218 67 HOH HOH . T 7 HOH A 81 219 68 HOH HOH . T 7 HOH A 82 220 70 HOH HOH . T 7 HOH A 83 221 221 HOH HOH . T 7 HOH A 84 222 222 HOH HOH . T 7 HOH A 85 223 73 HOH HOH . T 7 HOH A 86 224 75 HOH HOH . T 7 HOH A 87 225 225 HOH HOH . T 7 HOH A 88 226 79 HOH HOH . T 7 HOH A 89 227 82 HOH HOH . T 7 HOH A 90 228 83 HOH HOH . T 7 HOH A 91 229 229 HOH HOH . T 7 HOH A 92 230 84 HOH HOH . T 7 HOH A 93 231 85 HOH HOH . T 7 HOH A 94 232 86 HOH HOH . T 7 HOH A 95 233 87 HOH HOH . T 7 HOH A 96 234 88 HOH HOH . T 7 HOH A 97 235 90 HOH HOH . T 7 HOH A 98 236 91 HOH HOH . T 7 HOH A 99 237 93 HOH HOH . T 7 HOH A 100 238 95 HOH HOH . T 7 HOH A 101 239 100 HOH HOH . T 7 HOH A 102 240 101 HOH HOH . T 7 HOH A 103 241 104 HOH HOH . T 7 HOH A 104 242 109 HOH HOH . T 7 HOH A 105 243 110 HOH HOH . T 7 HOH A 106 244 111 HOH HOH . T 7 HOH A 107 245 112 HOH HOH . T 7 HOH A 108 246 113 HOH HOH . T 7 HOH A 109 247 114 HOH HOH . T 7 HOH A 110 248 118 HOH HOH . T 7 HOH A 111 249 122 HOH HOH . T 7 HOH A 112 250 123 HOH HOH . T 7 HOH A 113 251 125 HOH HOH . T 7 HOH A 114 252 127 HOH HOH . T 7 HOH A 115 253 129 HOH HOH . T 7 HOH A 116 254 135 HOH HOH . T 7 HOH A 117 255 136 HOH HOH . T 7 HOH A 118 256 137 HOH HOH . T 7 HOH A 119 257 138 HOH HOH . T 7 HOH A 120 258 196 HOH HOH . U 7 HOH B 1 138 4 HOH HOH . U 7 HOH B 2 139 5 HOH HOH . U 7 HOH B 3 140 140 HOH HOH . U 7 HOH B 4 141 141 HOH HOH . U 7 HOH B 5 142 7 HOH HOH . U 7 HOH B 6 143 143 HOH HOH . U 7 HOH B 7 144 144 HOH HOH . U 7 HOH B 8 145 145 HOH HOH . U 7 HOH B 9 146 146 HOH HOH . U 7 HOH B 10 147 8 HOH HOH . U 7 HOH B 11 148 9 HOH HOH . U 7 HOH B 12 149 10 HOH HOH . U 7 HOH B 13 150 11 HOH HOH . U 7 HOH B 14 151 151 HOH HOH . U 7 HOH B 15 152 12 HOH HOH . U 7 HOH B 16 153 18 HOH HOH . U 7 HOH B 17 154 25 HOH HOH . U 7 HOH B 18 155 155 HOH HOH . U 7 HOH B 19 156 156 HOH HOH . U 7 HOH B 20 157 157 HOH HOH . U 7 HOH B 21 158 33 HOH HOH . U 7 HOH B 22 159 34 HOH HOH . U 7 HOH B 23 160 160 HOH HOH . U 7 HOH B 24 161 161 HOH HOH . U 7 HOH B 25 162 162 HOH HOH . U 7 HOH B 26 163 163 HOH HOH . U 7 HOH B 27 164 35 HOH HOH . U 7 HOH B 28 165 36 HOH HOH . U 7 HOH B 29 166 166 HOH HOH . U 7 HOH B 30 167 37 HOH HOH . U 7 HOH B 31 168 168 HOH HOH . U 7 HOH B 32 169 169 HOH HOH . U 7 HOH B 33 170 170 HOH HOH . U 7 HOH B 34 171 38 HOH HOH . U 7 HOH B 35 172 172 HOH HOH . U 7 HOH B 36 173 40 HOH HOH . U 7 HOH B 37 174 42 HOH HOH . U 7 HOH B 38 175 175 HOH HOH . U 7 HOH B 39 176 176 HOH HOH . U 7 HOH B 40 177 45 HOH HOH . U 7 HOH B 41 178 49 HOH HOH . U 7 HOH B 42 179 179 HOH HOH . U 7 HOH B 43 180 53 HOH HOH . U 7 HOH B 44 181 181 HOH HOH . U 7 HOH B 45 182 182 HOH HOH . U 7 HOH B 46 183 183 HOH HOH . U 7 HOH B 47 184 56 HOH HOH . U 7 HOH B 48 185 185 HOH HOH . U 7 HOH B 49 186 60 HOH HOH . U 7 HOH B 50 187 187 HOH HOH . U 7 HOH B 51 188 69 HOH HOH . U 7 HOH B 52 189 71 HOH HOH . U 7 HOH B 53 190 190 HOH HOH . U 7 HOH B 54 191 72 HOH HOH . U 7 HOH B 55 192 192 HOH HOH . U 7 HOH B 56 193 74 HOH HOH . U 7 HOH B 57 194 76 HOH HOH . U 7 HOH B 58 195 77 HOH HOH . U 7 HOH B 59 197 78 HOH HOH . U 7 HOH B 60 198 198 HOH HOH . U 7 HOH B 61 199 199 HOH HOH . U 7 HOH B 62 200 80 HOH HOH . U 7 HOH B 63 201 81 HOH HOH . U 7 HOH B 64 202 89 HOH HOH . U 7 HOH B 65 203 92 HOH HOH . U 7 HOH B 66 204 204 HOH HOH . U 7 HOH B 67 205 205 HOH HOH . U 7 HOH B 68 206 206 HOH HOH . U 7 HOH B 69 207 94 HOH HOH . U 7 HOH B 70 208 208 HOH HOH . U 7 HOH B 71 209 209 HOH HOH . U 7 HOH B 72 210 96 HOH HOH . U 7 HOH B 73 211 211 HOH HOH . U 7 HOH B 74 212 212 HOH HOH . U 7 HOH B 75 213 213 HOH HOH . U 7 HOH B 76 214 97 HOH HOH . U 7 HOH B 77 215 215 HOH HOH . U 7 HOH B 78 216 216 HOH HOH . U 7 HOH B 79 217 98 HOH HOH . U 7 HOH B 80 218 218 HOH HOH . U 7 HOH B 81 219 219 HOH HOH . U 7 HOH B 82 220 220 HOH HOH . U 7 HOH B 83 221 99 HOH HOH . U 7 HOH B 84 222 102 HOH HOH . U 7 HOH B 85 223 223 HOH HOH . U 7 HOH B 86 224 224 HOH HOH . U 7 HOH B 87 225 103 HOH HOH . U 7 HOH B 88 226 226 HOH HOH . U 7 HOH B 89 227 227 HOH HOH . U 7 HOH B 90 228 228 HOH HOH . U 7 HOH B 91 229 105 HOH HOH . U 7 HOH B 92 230 106 HOH HOH . U 7 HOH B 93 231 108 HOH HOH . U 7 HOH B 94 232 115 HOH HOH . U 7 HOH B 95 233 116 HOH HOH . U 7 HOH B 96 234 117 HOH HOH . U 7 HOH B 97 235 119 HOH HOH . U 7 HOH B 98 236 120 HOH HOH . U 7 HOH B 99 237 121 HOH HOH . U 7 HOH B 100 238 124 HOH HOH . U 7 HOH B 101 239 126 HOH HOH . U 7 HOH B 102 240 128 HOH HOH . U 7 HOH B 103 241 130 HOH HOH . U 7 HOH B 104 242 131 HOH HOH . U 7 HOH B 105 243 132 HOH HOH . U 7 HOH B 106 244 133 HOH HOH . U 7 HOH B 107 245 134 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . P 4 52.526 56.411 19.286 1 71.16 ? C1 GOL 134 B 1 HETATM 2 O O1 GOL . . . P 4 51.691 55.704 18.388 1 58.96 ? O1 GOL 134 B 1 HETATM 3 C C2 GOL . . . P 4 51.671 57.042 20.388 1 72.39 ? C2 GOL 134 B 1 HETATM 4 O O2 GOL . . . P 4 50.809 56.05 20.895 1 53.46 ? O2 GOL 134 B 1 HETATM 5 C C3 GOL . . . P 4 50.843 58.182 19.785 1 86.49 ? C3 GOL 134 B 1 HETATM 6 O O3 GOL . . . P 4 50.07 58.845 20.764 1 78.62 ? O3 GOL 134 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #