data_3OLZ # _model_server_result.job_id 8yNLVkQmbyr2BqFEmdmNAQ _model_server_result.datetime_utc '2024-10-13 04:23:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3olz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":399}' # _entry.id 3OLZ # _exptl.entry_id 3OLZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3OLZ _cell.length_a 171.211 _cell.length_b 171.211 _cell.length_c 68.234 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OLZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K 1 1,2 A,B,C,D,E,F,G,H,I,J,K 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 x-y,x,z+1/6 0.5 -0.866025 0 0.866025 0.5 0 0 0 1 0 0 11.372333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 68 A CYS 68 1_555 A SG CYS 319 A CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf2 B SG CYS 68 B CYS 68 1_555 B SG CYS 319 B CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? covale ? covale1 A ND2 ASN 39 A ASN 39 1_555 C C1 NAG . A NAG 399 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale2 A ND2 ASN 247 A ASN 247 1_555 D C1 NAG . A NAG 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale3 A ND2 ASN 350 A ASN 350 1_555 E C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale4 B ND2 ASN 247 B ASN 247 1_555 G C1 NAG . B NAG 399 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale5 B ND2 ASN 350 B ASN 350 1_555 H C1 NAG . B NAG 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 3OLZ _atom_sites.fract_transf_matrix[1][1] 0.005841 _atom_sites.fract_transf_matrix[1][2] 0.003372 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006744 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014655 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG A 1 399 1 NAG NAG . D 2 NAG A 1 400 2 NAG NAG . E 2 NAG A 1 401 3 NAG NAG . F 3 CL A 1 402 1 CL CL . G 2 NAG B 1 399 1 NAG NAG . H 2 NAG B 1 400 2 NAG NAG . I 3 CL B 1 401 2 CL CL . J 4 HOH A 1 403 6 HOH HOH . J 4 HOH A 2 404 7 HOH HOH . J 4 HOH A 3 405 8 HOH HOH . J 4 HOH A 4 406 9 HOH HOH . J 4 HOH A 5 407 11 HOH HOH . J 4 HOH A 6 408 13 HOH HOH . K 4 HOH B 1 402 1 HOH HOH . K 4 HOH B 2 403 2 HOH HOH . K 4 HOH B 3 404 3 HOH HOH . K 4 HOH B 4 405 4 HOH HOH . K 4 HOH B 5 406 5 HOH HOH . K 4 HOH B 6 407 10 HOH HOH . K 4 HOH B 7 408 12 HOH HOH . K 4 HOH B 8 409 14 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . G 2 -4.741 47.435 30.429 1 77.63 ? C1 NAG 399 B 1 HETATM 2 C C2 NAG . . . G 2 -4.064 46.391 29.538 1 78.11 ? C2 NAG 399 B 1 HETATM 3 C C3 NAG . . . G 2 -4.378 44.983 30.06 1 93.3 ? C3 NAG 399 B 1 HETATM 4 C C4 NAG . . . G 2 -3.949 44.894 31.515 1 101.45 ? C4 NAG 399 B 1 HETATM 5 C C5 NAG . . . G 2 -4.605 46.015 32.318 1 102.19 ? C5 NAG 399 B 1 HETATM 6 C C6 NAG . . . G 2 -4.199 45.908 33.788 1 101.14 ? C6 NAG 399 B 1 HETATM 7 C C7 NAG . . . G 2 -3.567 46.321 27.163 1 76.09 ? C7 NAG 399 B 1 HETATM 8 C C8 NAG . . . G 2 -4.133 46.202 25.78 1 79.94 ? C8 NAG 399 B 1 HETATM 9 N N2 NAG . . . G 2 -4.435 46.578 28.14 1 65.07 ? N2 NAG 399 B 1 HETATM 10 O O3 NAG . . . G 2 -3.725 43.965 29.334 1 91.79 ? O3 NAG 399 B 1 HETATM 11 O O4 NAG . . . G 2 -4.308 43.64 32.047 1 110.16 ? O4 NAG 399 B 1 HETATM 12 O O5 NAG . . . G 2 -4.291 47.284 31.76 1 87.53 ? O5 NAG 399 B 1 HETATM 13 O O6 NAG . . . G 2 -4.128 47.173 34.411 1 86.09 ? O6 NAG 399 B 1 HETATM 14 O O7 NAG . . . G 2 -2.359 46.169 27.357 1 86.8 ? O7 NAG 399 B 1 HETATM 15 H H2 NAG . . . G 2 -2.984 46.51 29.63 1 93.73 ? H2 NAG 399 B 1 HETATM 16 H H3 NAG . . . G 2 -5.456 44.831 30.008 1 111.96 ? H3 NAG 399 B 1 HETATM 17 H H4 NAG . . . G 2 -2.867 45.012 31.562 1 121.74 ? H4 NAG 399 B 1 HETATM 18 H H5 NAG . . . G 2 -5.686 45.898 32.251 1 122.62 ? H5 NAG 399 B 1 HETATM 19 H H61 NAG . . . G 2 -3.221 45.433 33.862 1 121.37 ? H61 NAG 399 B 1 HETATM 20 H H62 NAG . . . G 2 -4.917 45.282 34.318 1 121.37 ? H62 NAG 399 B 1 HETATM 21 H H81 NAG . . . G 2 -3.919 45.209 25.384 1 95.92 ? H81 NAG 399 B 1 HETATM 22 H H82 NAG . . . G 2 -3.68 46.956 25.136 1 95.92 ? H82 NAG 399 B 1 HETATM 23 H H83 NAG . . . G 2 -5.212 46.354 25.815 1 95.92 ? H83 NAG 399 B 1 HETATM 24 H HN2 NAG . . . G 2 -5.402 46.77 27.919 1 78.09 ? HN2 NAG 399 B 1 HETATM 25 H HO3 NAG . . . G 2 -3.185 44.367 28.622 1 110.15 ? HO3 NAG 399 B 1 HETATM 26 H HO4 NAG . . . G 2 -4.755 43.107 31.356 1 132.19 ? HO4 NAG 399 B 1 HETATM 27 H HO6 NAG . . . G 2 -4.358 47.87 33.761 1 103.31 ? HO6 NAG 399 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 27 #