data_3OLZ
#
_model_server_result.job_id            K5F4ZyXhyJXoFklYSvONTQ 
_model_server_result.datetime_utc      '2024-10-13 04:19:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3olz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":400}' 
#
_entry.id    3OLZ 
#
_exptl.entry_id    3OLZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3OLZ 
_cell.length_a            171.211 
_cell.length_b            171.211 
_cell.length_c            68.234 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3OLZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? tetrameric 4 author_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K 1 1,2 
A,B,C,D,E,F,G,H,I,J,K 2 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 6_555 x-y,x,z+1/6 0.5 -0.866025 0 0.866025 0.5 0 0 0 1 0 0 11.372333 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 G N N 
? 2 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 68 A CYS 68 1_555 A SG CYS 319 A CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf2 B SG CYS 68 B CYS 68 1_555 B SG CYS 319 B CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
covale ? covale1 A ND2 ASN 39 A ASN 39 1_555 C C1 NAG . A NAG 399 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale2 A ND2 ASN 247 A ASN 247 1_555 D C1 NAG . A NAG 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale3 A ND2 ASN 350 A ASN 350 1_555 E C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale4 B ND2 ASN 247 B ASN 247 1_555 G C1 NAG . B NAG 399 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? 
covale ? covale5 B ND2 ASN 350 B ASN 350 1_555 H C1 NAG . B NAG 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     3OLZ 
_atom_sites.fract_transf_matrix[1][1]    0.005841 
_atom_sites.fract_transf_matrix[1][2]    0.003372 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006744 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014655 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAG A 1 399 1 NAG NAG . 
D 2 NAG A 1 400 2 NAG NAG . 
E 2 NAG A 1 401 3 NAG NAG . 
F 3 CL A 1 402 1 CL CL . 
G 2 NAG B 1 399 1 NAG NAG . 
H 2 NAG B 1 400 2 NAG NAG . 
I 3 CL B 1 401 2 CL CL . 
J 4 HOH A 1 403 6 HOH HOH . 
J 4 HOH A 2 404 7 HOH HOH . 
J 4 HOH A 3 405 8 HOH HOH . 
J 4 HOH A 4 406 9 HOH HOH . 
J 4 HOH A 5 407 11 HOH HOH . 
J 4 HOH A 6 408 13 HOH HOH . 
K 4 HOH B 1 402 1 HOH HOH . 
K 4 HOH B 2 403 2 HOH HOH . 
K 4 HOH B 3 404 3 HOH HOH . 
K 4 HOH B 4 405 4 HOH HOH . 
K 4 HOH B 5 406 5 HOH HOH . 
K 4 HOH B 6 407 10 HOH HOH . 
K 4 HOH B 7 408 12 HOH HOH . 
K 4 HOH B 8 409 14 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . H 2 26.7 65.812 33.749 1 137.81 ? C1 NAG 400 B 1 
HETATM 2 C C2 NAG . . . H 2 27.414 64.676 34.485 1 158.08 ? C2 NAG 400 B 1 
HETATM 3 C C3 NAG . . . H 2 28.216 63.715 33.609 1 165.91 ? C3 NAG 400 B 1 
HETATM 4 C C4 NAG . . . H 2 27.612 63.523 32.229 1 165.31 ? C4 NAG 400 B 1 
HETATM 5 C C5 NAG . . . H 2 27.273 64.885 31.649 1 160.27 ? C5 NAG 400 B 1 
HETATM 6 C C6 NAG . . . H 2 26.799 64.793 30.2 1 154.24 ? C6 NAG 400 B 1 
HETATM 7 C C7 NAG . . . H 2 28.346 64.876 36.709 1 163.46 ? C7 NAG 400 B 1 
HETATM 8 C C8 NAG . . . H 2 29.639 65.067 37.447 1 169.87 ? C8 NAG 400 B 1 
HETATM 9 N N2 NAG . . . H 2 28.328 65.264 35.442 1 163.76 ? N2 NAG 400 B 1 
HETATM 10 O O3 NAG . . . H 2 28.293 62.462 34.25 1 170.04 ? O3 NAG 400 B 1 
HETATM 11 O O4 NAG . . . H 2 28.542 62.874 31.392 1 163.72 ? O4 NAG 400 B 1 
HETATM 12 O O5 NAG . . . H 2 26.27 65.464 32.45 1 156.14 ? O5 NAG 400 B 1 
HETATM 13 O O6 NAG . . . H 2 25.659 63.969 30.098 1 150.99 ? O6 NAG 400 B 1 
HETATM 14 O O7 NAG . . . H 2 27.367 64.381 37.261 1 152.32 ? O7 NAG 400 B 1 
HETATM 15 H H2 NAG . . . H 2 26.668 64.097 35.029 1 189.69 ? H2 NAG 400 B 1 
HETATM 16 H H3 NAG . . . H 2 29.22 64.122 33.484 1 199.1 ? H3 NAG 400 B 1 
HETATM 17 H H4 NAG . . . H 2 26.719 62.906 32.328 1 198.37 ? H4 NAG 400 B 1 
HETATM 18 H H5 NAG . . . H 2 28.17 65.503 31.678 1 192.33 ? H5 NAG 400 B 1 
HETATM 19 H H61 NAG . . . H 2 27.601 64.39 29.581 1 185.09 ? H61 NAG 400 B 1 
HETATM 20 H H62 NAG . . . H 2 26.561 65.791 29.832 1 185.09 ? H62 NAG 400 B 1 
HETATM 21 H H81 NAG . . . H 2 30.004 64.101 37.796 1 203.84 ? H81 NAG 400 B 1 
HETATM 22 H H82 NAG . . . H 2 29.476 65.724 38.301 1 203.84 ? H82 NAG 400 B 1 
HETATM 23 H H83 NAG . . . H 2 30.376 65.514 36.779 1 203.84 ? H83 NAG 400 B 1 
HETATM 24 H HN2 NAG . . . H 2 28.933 66.011 35.134 1 196.51 ? HN2 NAG 400 B 1 
HETATM 25 H HO3 NAG . . . H 2 27.815 62.502 35.105 1 204.04 ? HO3 NAG 400 B 1 
HETATM 26 H HO4 NAG . . . H 2 29.364 62.696 31.893 1 196.47 ? HO4 NAG 400 B 1 
HETATM 27 H HO6 NAG . . . H 2 25.418 63.633 30.986 1 181.19 ? HO6 NAG 400 B 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    30 
_model_server_stats.query_time_ms           271 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#