data_3OMM # _model_server_result.job_id GGh5S6fpG9bkkCEPhmKGBg _model_server_result.datetime_utc '2025-01-02 17:38:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3omm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1}' # _entry.id 3OMM # _exptl.entry_id 3OMM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 541.949 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-({(2S)-2-[2-(4-chlorophenyl)-5,6-difluoro-1H-benzimidazol-1-yl]-2-cyclohexylacetyl}amino)-3-fluorobenzoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3OMM _cell.length_a 72.13 _cell.length_b 83.94 _cell.length_c 190.48 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OMM _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G,H 1 1 C,D,F,I,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C28 H23 Cl F3 N3 O3' _chem_comp.formula_weight 541.949 _chem_comp.id OMM _chem_comp.mon_nstd_flag . _chem_comp.name '4-({(2S)-2-[2-(4-chlorophenyl)-5,6-difluoro-1H-benzimidazol-1-yl]-2-cyclohexylacetyl}amino)-3-fluorobenzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 OMM sing 237 n y N1 C4 OMM sing 238 n y N1 C7 OMM sing 239 n n C2 N3 OMM doub 240 n y C2 C14 OMM sing 241 n y N3 C5 OMM sing 242 n y C4 C5 OMM doub 243 n y C4 C8 OMM sing 244 n y C5 C10 OMM sing 245 n y C6 C7 OMM sing 246 n n C6 N9 OMM sing 247 n n C6 O19 OMM doub 248 n n C7 C23 OMM sing 249 n n C8 C11 OMM doub 250 n y N9 C12 OMM sing 251 n n C10 C15 OMM doub 252 n y C11 C15 OMM sing 253 n y C11 F26 OMM sing 254 n n C12 C17 OMM doub 255 n y C12 C21 OMM sing 256 n y C13 C16 OMM sing 257 n n C13 O20 OMM doub 258 n n C13 O29 OMM sing 259 n n C14 C24 OMM doub 260 n y C14 C25 OMM sing 261 n y C15 F27 OMM sing 262 n n C16 C18 OMM doub 263 n y C16 C22 OMM sing 264 n y C17 C18 OMM sing 265 n y C17 F28 OMM sing 266 n n C21 C22 OMM doub 267 n y C23 C34 OMM sing 268 n n C23 C35 OMM sing 269 n n C24 C32 OMM sing 270 n y C25 C31 OMM doub 271 n y C30 C31 OMM sing 272 n y C30 C32 OMM doub 273 n y C30 CL33 OMM sing 274 n n C34 C37 OMM sing 275 n n C35 C36 OMM sing 276 n n C36 C38 OMM sing 277 n n C37 C38 OMM sing 278 n n C7 H7 OMM sing 279 n n C8 H8 OMM sing 280 n n N9 HN9 OMM sing 281 n n C10 H10 OMM sing 282 n n C18 H18 OMM sing 283 n n C21 H21 OMM sing 284 n n C22 H22 OMM sing 285 n n C23 H23 OMM sing 286 n n C24 H24 OMM sing 287 n n C25 H25 OMM sing 288 n n C31 H31 OMM sing 289 n n C32 H32 OMM sing 290 n n C34 H34 OMM sing 291 n n C34 H34A OMM sing 292 n n C35 H35 OMM sing 293 n n C35 H35A OMM sing 294 n n C36 H36 OMM sing 295 n n C36 H36A OMM sing 296 n n C37 H37 OMM sing 297 n n C37 H37A OMM sing 298 n n C38 H38 OMM sing 299 n n C38 H38A OMM sing 300 n n O29 H29 OMM sing 301 n n # _atom_sites.entry_id 3OMM _atom_sites.fract_transf_matrix[1][1] 0.013864 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011913 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00525 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 OMM A 1 1 1 OMM OMM . F 3 OMM C 1 2 2 OMM OMM . G 4 HOH A 1 3 3 HOH HOH . G 4 HOH A 2 4 4 HOH HOH . G 4 HOH A 3 5 5 HOH HOH . G 4 HOH A 4 6 6 HOH HOH . G 4 HOH A 5 7 7 HOH HOH . G 4 HOH A 6 8 8 HOH HOH . G 4 HOH A 7 9 9 HOH HOH . G 4 HOH A 8 11 11 HOH HOH . G 4 HOH A 9 12 12 HOH HOH . G 4 HOH A 10 13 13 HOH HOH . G 4 HOH A 11 14 14 HOH HOH . G 4 HOH A 12 15 15 HOH HOH . G 4 HOH A 13 17 17 HOH HOH . G 4 HOH A 14 18 18 HOH HOH . G 4 HOH A 15 19 19 HOH HOH . G 4 HOH A 16 20 20 HOH HOH . G 4 HOH A 17 21 21 HOH HOH . G 4 HOH A 18 22 22 HOH HOH . G 4 HOH A 19 23 23 HOH HOH . G 4 HOH A 20 24 24 HOH HOH . G 4 HOH A 21 27 27 HOH HOH . G 4 HOH A 22 29 29 HOH HOH . G 4 HOH A 23 30 30 HOH HOH . G 4 HOH A 24 37 37 HOH HOH . G 4 HOH A 25 38 38 HOH HOH . G 4 HOH A 26 39 39 HOH HOH . G 4 HOH A 27 41 41 HOH HOH . G 4 HOH A 28 44 44 HOH HOH . G 4 HOH A 29 45 45 HOH HOH . G 4 HOH A 30 46 46 HOH HOH . G 4 HOH A 31 47 47 HOH HOH . G 4 HOH A 32 48 48 HOH HOH . G 4 HOH A 33 49 49 HOH HOH . G 4 HOH A 34 51 51 HOH HOH . G 4 HOH A 35 52 52 HOH HOH . G 4 HOH A 36 53 53 HOH HOH . G 4 HOH A 37 54 54 HOH HOH . G 4 HOH A 38 56 56 HOH HOH . G 4 HOH A 39 57 57 HOH HOH . G 4 HOH A 40 59 59 HOH HOH . G 4 HOH A 41 60 60 HOH HOH . G 4 HOH A 42 61 61 HOH HOH . G 4 HOH A 43 64 64 HOH HOH . G 4 HOH A 44 66 66 HOH HOH . G 4 HOH A 45 69 69 HOH HOH . G 4 HOH A 46 71 71 HOH HOH . G 4 HOH A 47 74 74 HOH HOH . G 4 HOH A 48 75 75 HOH HOH . G 4 HOH A 49 77 77 HOH HOH . G 4 HOH A 50 78 78 HOH HOH . G 4 HOH A 51 82 82 HOH HOH . G 4 HOH A 52 83 83 HOH HOH . G 4 HOH A 53 85 85 HOH HOH . G 4 HOH A 54 87 87 HOH HOH . G 4 HOH A 55 88 88 HOH HOH . G 4 HOH A 56 90 90 HOH HOH . G 4 HOH A 57 92 92 HOH HOH . G 4 HOH A 58 94 94 HOH HOH . G 4 HOH A 59 97 97 HOH HOH . G 4 HOH A 60 99 99 HOH HOH . G 4 HOH A 61 100 100 HOH HOH . G 4 HOH A 62 101 101 HOH HOH . G 4 HOH A 63 102 102 HOH HOH . G 4 HOH A 64 104 104 HOH HOH . G 4 HOH A 65 105 105 HOH HOH . G 4 HOH A 66 106 106 HOH HOH . G 4 HOH A 67 108 108 HOH HOH . G 4 HOH A 68 110 110 HOH HOH . G 4 HOH A 69 111 111 HOH HOH . G 4 HOH A 70 112 112 HOH HOH . G 4 HOH A 71 114 114 HOH HOH . G 4 HOH A 72 115 115 HOH HOH . G 4 HOH A 73 116 116 HOH HOH . G 4 HOH A 74 117 117 HOH HOH . G 4 HOH A 75 118 118 HOH HOH . G 4 HOH A 76 119 119 HOH HOH . H 4 HOH B 1 68 68 HOH HOH . H 4 HOH B 2 89 89 HOH HOH . H 4 HOH B 3 109 109 HOH HOH . I 4 HOH C 1 1 1 HOH HOH . I 4 HOH C 2 10 10 HOH HOH . I 4 HOH C 3 25 25 HOH HOH . I 4 HOH C 4 26 26 HOH HOH . I 4 HOH C 5 28 28 HOH HOH . I 4 HOH C 6 31 31 HOH HOH . I 4 HOH C 7 32 32 HOH HOH . I 4 HOH C 8 33 33 HOH HOH . I 4 HOH C 9 35 35 HOH HOH . I 4 HOH C 10 36 36 HOH HOH . I 4 HOH C 11 40 40 HOH HOH . I 4 HOH C 12 42 42 HOH HOH . I 4 HOH C 13 43 43 HOH HOH . I 4 HOH C 14 50 50 HOH HOH . I 4 HOH C 15 55 55 HOH HOH . I 4 HOH C 16 58 58 HOH HOH . I 4 HOH C 17 62 62 HOH HOH . I 4 HOH C 18 63 63 HOH HOH . I 4 HOH C 19 65 65 HOH HOH . I 4 HOH C 20 67 67 HOH HOH . I 4 HOH C 21 70 70 HOH HOH . I 4 HOH C 22 72 72 HOH HOH . I 4 HOH C 23 73 73 HOH HOH . I 4 HOH C 24 76 76 HOH HOH . I 4 HOH C 25 79 79 HOH HOH . I 4 HOH C 26 80 80 HOH HOH . I 4 HOH C 27 81 81 HOH HOH . I 4 HOH C 28 84 84 HOH HOH . I 4 HOH C 29 86 86 HOH HOH . I 4 HOH C 30 91 91 HOH HOH . I 4 HOH C 31 93 93 HOH HOH . I 4 HOH C 32 95 95 HOH HOH . I 4 HOH C 33 96 96 HOH HOH . I 4 HOH C 34 98 98 HOH HOH . I 4 HOH C 35 103 103 HOH HOH . I 4 HOH C 36 107 107 HOH HOH . I 4 HOH C 37 113 113 HOH HOH . I 4 HOH C 38 120 120 HOH HOH . I 4 HOH C 39 477 477 HOH HOH . J 4 HOH D 1 16 16 HOH HOH . J 4 HOH D 2 34 34 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 OMM . . . E 3 12.981 24.063 3.51 1 36.37 ? N1 OMM 1 A 1 HETATM 2 C C2 OMM . . . E 3 13.857 24.757 2.71 1 34.93 ? C2 OMM 1 A 1 HETATM 3 N N3 OMM . . . E 3 13.247 25.764 2.155 1 33.08 ? N3 OMM 1 A 1 HETATM 4 C C4 OMM . . . E 3 11.775 24.689 3.413 1 35.03 ? C4 OMM 1 A 1 HETATM 5 C C5 OMM . . . E 3 11.963 25.776 2.542 1 33.53 ? C5 OMM 1 A 1 HETATM 6 C C6 OMM . . . E 3 12.387 21.751 3.98 1 39.45 ? C6 OMM 1 A 1 HETATM 7 C C7 OMM . . . E 3 13.296 22.891 4.345 1 37.6 ? C7 OMM 1 A 1 HETATM 8 C C8 OMM . . . E 3 10.55 24.44 4.008 1 37.75 ? C8 OMM 1 A 1 HETATM 9 N N9 OMM . . . E 3 12.058 21.612 2.666 1 40.83 ? N9 OMM 1 A 1 HETATM 10 C C10 OMM . . . E 3 10.881 26.617 2.272 1 37.41 ? C10 OMM 1 A 1 HETATM 11 C C11 OMM . . . E 3 9.503 25.275 3.739 1 40.02 ? C11 OMM 1 A 1 HETATM 12 C C12 OMM . . . E 3 11.175 20.657 2.158 1 46.5 ? C12 OMM 1 A 1 HETATM 13 C C13 OMM . . . E 3 8.424 17.702 0.7 1 47.3 ? C13 OMM 1 A 1 HETATM 14 C C14 OMM . . . E 3 15.267 24.362 2.513 1 37.23 ? C14 OMM 1 A 1 HETATM 15 C C15 OMM . . . E 3 9.669 26.336 2.86 1 38.26 ? C15 OMM 1 A 1 HETATM 16 C C16 OMM . . . E 3 9.363 18.737 1.215 1 46.39 ? C16 OMM 1 A 1 HETATM 17 C C17 OMM . . . E 3 11.56 19.333 2.034 1 53.84 ? C17 OMM 1 A 1 HETATM 18 C C18 OMM . . . E 3 10.666 18.376 1.571 1 50.81 ? C18 OMM 1 A 1 HETATM 19 O O19 OMM . . . E 3 11.964 21.001 4.851 1 42.06 ? O19 OMM 1 A 1 HETATM 20 O O20 OMM . . . E 3 8.808 16.574 0.615 1 40.88 ? O20 OMM 1 A 1 HETATM 21 C C21 OMM . . . E 3 9.865 21.034 1.822 1 48.76 ? C21 OMM 1 A 1 HETATM 22 C C22 OMM . . . E 3 8.989 20.082 1.321 1 47.2 ? C22 OMM 1 A 1 HETATM 23 C C23 OMM . . . E 3 13.227 23.286 5.841 1 38.35 ? C23 OMM 1 A 1 HETATM 24 C C24 OMM . . . E 3 16.278 25.12 3.088 1 40.66 ? C24 OMM 1 A 1 HETATM 25 C C25 OMM . . . E 3 15.581 23.156 1.87 1 39.3 ? C25 OMM 1 A 1 HETATM 26 F F26 OMM . . . E 3 8.317 25.034 4.34 1 43.79 ? F26 OMM 1 A 1 HETATM 27 F F27 OMM . . . E 3 8.621 27.127 2.608 1 45.04 ? F27 OMM 1 A 1 HETATM 28 F F28 OMM . . . E 3 12.793 18.969 2.442 1 61.64 ? F28 OMM 1 A 1 HETATM 29 O O29 OMM . . . E 3 7.166 17.977 0.29 1 54.25 ? O29 OMM 1 A 1 HETATM 30 C C30 OMM . . . E 3 17.908 23.555 2.266 1 42.85 ? C30 OMM 1 A 1 HETATM 31 C C31 OMM . . . E 3 16.898 22.747 1.77 1 38.69 ? C31 OMM 1 A 1 HETATM 32 C C32 OMM . . . E 3 17.581 24.717 2.949 1 42.57 ? C32 OMM 1 A 1 HETATM 33 CL CL33 OMM . . . E 3 19.589 23.1 2.128 1 45.5 ? CL33 OMM 1 A 1 HETATM 34 C C34 OMM . . . E 3 13.881 22.202 6.714 1 39.71 ? C34 OMM 1 A 1 HETATM 35 C C35 OMM . . . E 3 13.993 24.6 6.052 1 40.01 ? C35 OMM 1 A 1 HETATM 36 C C36 OMM . . . E 3 13.901 25.024 7.533 1 43.11 ? C36 OMM 1 A 1 HETATM 37 C C37 OMM . . . E 3 13.905 22.601 8.199 1 40.44 ? C37 OMM 1 A 1 HETATM 38 C C38 OMM . . . E 3 14.633 23.946 8.353 1 40.18 ? C38 OMM 1 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 47 _model_server_stats.query_time_ms 574 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 38 #