data_3OMV # _model_server_result.job_id h-_BE_rx-KGmBQK13MuzdQ _model_server_result.datetime_utc '2024-11-09 02:21:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3omv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2}' # _entry.id 3OMV # _exptl.entry_id 3OMV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 373.451 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1E)-5-(1-piperidin-4-yl-3-pyridin-4-yl-1H-pyrazol-4-yl)-2,3-dihydro-1H-inden-1-one oxime' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3OMV _cell.length_a 99.57 _cell.length_b 99.57 _cell.length_c 161.422 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OMV _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C22 H23 N5 O' _chem_comp.formula_weight 373.451 _chem_comp.id SM5 _chem_comp.mon_nstd_flag . _chem_comp.name '(1E)-5-(1-piperidin-4-yl-3-pyridin-4-yl-1H-pyrazol-4-yl)-2,3-dihydro-1H-inden-1-one oxime' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 H18 SM5 sing 288 n n N4 C18 SM5 sing 289 n n N4 C5 SM5 sing 290 n y C14 H14 SM5 sing 291 n n C13 C14 SM5 sing 292 n y C13 H13 SM5 sing 293 n n C12 C13 SM5 doub 294 n y C17 C16 SM5 doub 295 n y C17 C12 SM5 sing 296 n y C17 H17 SM5 sing 297 n n C16 C15 SM5 sing 298 n y C15 C26 SM5 sing 299 n n C15 C14 SM5 doub 300 n y C11 H11 SM5 sing 301 n n N3 C2 SM5 doub 302 n y N3 N4 SM5 sing 303 n y C10 C11 SM5 sing 304 n y C10 H10 SM5 sing 305 n n C8 C7 SM5 doub 306 n y C8 N9 SM5 sing 307 n y C8 H8 SM5 sing 308 n n C22 H122 SM5 sing 309 n n C22 H222 SM5 sing 310 n n C7 C6 SM5 sing 311 n y C7 H7 SM5 sing 312 n n C5 H5 SM5 sing 313 n n C6 C2 SM5 sing 314 n y C6 C11 SM5 doub 315 n y C1 C5 SM5 doub 316 n y C1 C12 SM5 sing 317 n y C19 C20 SM5 sing 318 n n C19 C18 SM5 sing 319 n n C19 H119 SM5 sing 320 n n C19 H219 SM5 sing 321 n n C20 H120 SM5 sing 322 n n C20 H220 SM5 sing 323 n n C2 C1 SM5 sing 324 n y N9 C10 SM5 doub 325 n y N21 C22 SM5 sing 326 n n N21 C20 SM5 sing 327 n n C23 C22 SM5 sing 328 n n C23 C18 SM5 sing 329 n n C23 H123 SM5 sing 330 n n C23 H223 SM5 sing 331 n n C24 C16 SM5 sing 332 n n C24 C25 SM5 sing 333 n n C24 H24 SM5 sing 334 n n C25 C26 SM5 sing 335 n n C25 H25 SM5 sing 336 n n C26 N27 SM5 doub 337 n n N27 O28 SM5 sing 338 n n O28 HO28 SM5 sing 339 n n N21 H121 SM5 sing 340 e n C24 H22 SM5 sing 341 n n C25 H23 SM5 sing 342 n n # _atom_sites.entry_id 3OMV _atom_sites.fract_transf_matrix[1][1] 0.010043 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010043 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006195 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SM5 A 1 1 1 SM5 SM5 . D 2 SM5 B 1 2 2 SM5 SM5 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 SM5 . . . D 2 32.847 39.019 39.183 1 68 ? C18 SM5 2 B 1 HETATM 2 N N4 SM5 . . . D 2 31.391 38.9 39.166 1 68 ? N4 SM5 2 B 1 HETATM 3 C C14 SM5 . . . D 2 26.772 42.192 38.755 1 68 ? C14 SM5 2 B 1 HETATM 4 C C13 SM5 . . . D 2 27.969 41.445 38.794 1 68 ? C13 SM5 2 B 1 HETATM 5 C C12 SM5 . . . D 2 27.953 40.063 39.093 1 68 ? C12 SM5 2 B 1 HETATM 6 C C17 SM5 . . . D 2 26.729 39.414 39.363 1 68 ? C17 SM5 2 B 1 HETATM 7 C C16 SM5 . . . D 2 25.539 40.159 39.319 1 68 ? C16 SM5 2 B 1 HETATM 8 C C15 SM5 . . . D 2 25.564 41.519 39.021 1 68 ? C15 SM5 2 B 1 HETATM 9 C C11 SM5 . . . D 2 28.901 35.502 39.627 1 68 ? C11 SM5 2 B 1 HETATM 10 N N3 SM5 . . . D 2 30.756 37.701 39.213 1 68 ? N3 SM5 2 B 1 HETATM 11 C C10 SM5 . . . D 2 27.938 34.468 39.617 1 68 ? C10 SM5 2 B 1 HETATM 12 C C8 SM5 . . . D 2 26.27 35.906 38.826 1 68 ? C8 SM5 2 B 1 HETATM 13 C C22 SM5 . . . D 2 35.092 37.984 39.294 1 68 ? C22 SM5 2 B 1 HETATM 14 C C7 SM5 . . . D 2 27.174 36.986 38.806 1 68 ? C7 SM5 2 B 1 HETATM 15 C C5 SM5 . . . D 2 30.479 39.919 39.12 1 68 ? C5 SM5 2 B 1 HETATM 16 C C6 SM5 . . . D 2 28.511 36.8 39.22 1 68 ? C6 SM5 2 B 1 HETATM 17 C C1 SM5 . . . D 2 29.221 39.319 39.136 1 68 ? C1 SM5 2 B 1 HETATM 18 C C19 SM5 . . . D 2 33.425 40.319 38.559 1 68 ? C19 SM5 2 B 1 HETATM 19 C C20 SM5 . . . D 2 34.934 40.463 38.874 1 68 ? C20 SM5 2 B 1 HETATM 20 C C2 SM5 . . . D 2 29.472 37.928 39.198 1 68 ? C2 SM5 2 B 1 HETATM 21 N N9 SM5 . . . D 2 26.658 34.671 39.226 1 68 ? N9 SM5 2 B 1 HETATM 22 N N21 SM5 . . . D 2 35.69 39.192 38.662 1 68 ? N21 SM5 2 B 1 HETATM 23 C C23 SM5 . . . D 2 33.649 37.757 38.796 1 68 ? C23 SM5 2 B 1 HETATM 24 C C24 SM5 . . . D 2 24.157 39.635 39.57 1 68 ? C24 SM5 2 B 1 HETATM 25 C C25 SM5 . . . D 2 23.296 40.918 39.379 1 68 ? C25 SM5 2 B 1 HETATM 26 C C26 SM5 . . . D 2 24.231 42.092 39.033 1 68 ? C26 SM5 2 B 1 HETATM 27 N N27 SM5 . . . D 2 23.976 43.337 38.781 1 68 ? N27 SM5 2 B 1 HETATM 28 O O28 SM5 . . . D 2 22.578 43.606 38.883 1 68 ? O28 SM5 2 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #