data_3OMY # _model_server_result.job_id C0Xtb4MltzHk7rJ3fB6xAg _model_server_result.datetime_utc '2024-11-09 02:49:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3omy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":53}' # _entry.id 3OMY # _exptl.entry_id 3OMY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3OMY _cell.length_a 54.069 _cell.length_b 54.069 _cell.length_c 67.268 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OMY _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1,2 B,D,F 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 67.268 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OD1 ASN 35 B ASN 35 1_555 D MG MG . B MG 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.823 ? metalc ? metalc2 D MG MG . B MG 53 1_555 F O HOH . B HOH 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? metalc ? metalc3 D MG MG . B MG 53 1_555 F O HOH . B HOH 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.789 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 3OMY _atom_sites.fract_transf_matrix[1][1] 0.018495 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018495 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014866 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 53 1 GOL GOL . D 3 MG B 1 53 1 MG MG . E 4 HOH A 1 54 54 HOH HOH . E 4 HOH A 2 55 1 HOH HOH . E 4 HOH A 3 56 3 HOH HOH . E 4 HOH A 4 57 4 HOH HOH . E 4 HOH A 5 58 58 HOH HOH . E 4 HOH A 6 59 8 HOH HOH . E 4 HOH A 7 60 60 HOH HOH . E 4 HOH A 8 61 12 HOH HOH . E 4 HOH A 9 62 62 HOH HOH . E 4 HOH A 10 63 16 HOH HOH . E 4 HOH A 11 64 20 HOH HOH . E 4 HOH A 12 65 21 HOH HOH . E 4 HOH A 13 66 24 HOH HOH . E 4 HOH A 14 67 67 HOH HOH . E 4 HOH A 15 68 26 HOH HOH . E 4 HOH A 16 69 69 HOH HOH . E 4 HOH A 17 70 70 HOH HOH . E 4 HOH A 18 71 71 HOH HOH . E 4 HOH A 19 72 72 HOH HOH . E 4 HOH A 20 73 27 HOH HOH . E 4 HOH A 21 74 74 HOH HOH . E 4 HOH A 22 75 30 HOH HOH . E 4 HOH A 23 76 33 HOH HOH . E 4 HOH A 24 77 77 HOH HOH . E 4 HOH A 25 78 78 HOH HOH . E 4 HOH A 26 79 79 HOH HOH . E 4 HOH A 27 80 35 HOH HOH . E 4 HOH A 28 81 37 HOH HOH . E 4 HOH A 29 82 39 HOH HOH . E 4 HOH A 30 83 83 HOH HOH . E 4 HOH A 31 84 84 HOH HOH . E 4 HOH A 32 85 85 HOH HOH . E 4 HOH A 33 86 40 HOH HOH . E 4 HOH A 34 87 87 HOH HOH . E 4 HOH A 35 88 47 HOH HOH . E 4 HOH A 36 89 89 HOH HOH . E 4 HOH A 37 90 48 HOH HOH . E 4 HOH A 38 91 51 HOH HOH . E 4 HOH A 39 92 52 HOH HOH . E 4 HOH A 40 94 94 HOH HOH . E 4 HOH A 41 95 95 HOH HOH . E 4 HOH A 42 96 96 HOH HOH . E 4 HOH A 43 97 97 HOH HOH . E 4 HOH A 44 100 100 HOH HOH . E 4 HOH A 45 102 102 HOH HOH . E 4 HOH A 46 105 105 HOH HOH . E 4 HOH A 47 111 111 HOH HOH . E 4 HOH A 48 113 113 HOH HOH . E 4 HOH A 49 119 119 HOH HOH . E 4 HOH A 50 123 123 HOH HOH . E 4 HOH A 51 125 125 HOH HOH . E 4 HOH A 52 127 127 HOH HOH . E 4 HOH A 53 134 134 HOH HOH . E 4 HOH A 54 135 135 HOH HOH . E 4 HOH A 55 140 140 HOH HOH . E 4 HOH A 56 141 141 HOH HOH . E 4 HOH A 57 144 144 HOH HOH . E 4 HOH A 58 145 145 HOH HOH . E 4 HOH A 59 147 147 HOH HOH . E 4 HOH A 60 150 150 HOH HOH . E 4 HOH A 61 151 151 HOH HOH . E 4 HOH A 62 152 152 HOH HOH . E 4 HOH A 63 155 155 HOH HOH . E 4 HOH A 64 159 159 HOH HOH . E 4 HOH A 65 160 160 HOH HOH . E 4 HOH A 66 165 165 HOH HOH . E 4 HOH A 67 176 176 HOH HOH . E 4 HOH A 68 177 177 HOH HOH . E 4 HOH A 69 178 178 HOH HOH . E 4 HOH A 70 180 180 HOH HOH . E 4 HOH A 71 186 186 HOH HOH . E 4 HOH A 72 187 187 HOH HOH . E 4 HOH A 73 188 188 HOH HOH . E 4 HOH A 74 189 189 HOH HOH . E 4 HOH A 75 190 190 HOH HOH . E 4 HOH A 76 191 191 HOH HOH . E 4 HOH A 77 194 194 HOH HOH . E 4 HOH A 78 195 195 HOH HOH . E 4 HOH A 79 196 196 HOH HOH . E 4 HOH A 80 200 200 HOH HOH . E 4 HOH A 81 202 202 HOH HOH . E 4 HOH A 82 206 206 HOH HOH . F 4 HOH B 1 54 5 HOH HOH . F 4 HOH B 2 55 55 HOH HOH . F 4 HOH B 3 56 6 HOH HOH . F 4 HOH B 4 57 57 HOH HOH . F 4 HOH B 5 58 7 HOH HOH . F 4 HOH B 6 59 9 HOH HOH . F 4 HOH B 7 60 10 HOH HOH . F 4 HOH B 8 61 61 HOH HOH . F 4 HOH B 9 62 13 HOH HOH . F 4 HOH B 10 63 63 HOH HOH . F 4 HOH B 11 64 64 HOH HOH . F 4 HOH B 12 65 65 HOH HOH . F 4 HOH B 13 66 66 HOH HOH . F 4 HOH B 14 67 15 HOH HOH . F 4 HOH B 15 68 68 HOH HOH . F 4 HOH B 16 69 22 HOH HOH . F 4 HOH B 17 70 23 HOH HOH . F 4 HOH B 18 71 25 HOH HOH . F 4 HOH B 19 72 28 HOH HOH . F 4 HOH B 20 73 73 HOH HOH . F 4 HOH B 21 74 31 HOH HOH . F 4 HOH B 22 75 75 HOH HOH . F 4 HOH B 23 76 76 HOH HOH . F 4 HOH B 24 77 34 HOH HOH . F 4 HOH B 25 78 38 HOH HOH . F 4 HOH B 26 79 41 HOH HOH . F 4 HOH B 27 80 80 HOH HOH . F 4 HOH B 28 81 81 HOH HOH . F 4 HOH B 29 82 42 HOH HOH . F 4 HOH B 30 83 43 HOH HOH . F 4 HOH B 31 84 45 HOH HOH . F 4 HOH B 32 85 49 HOH HOH . F 4 HOH B 33 86 86 HOH HOH . F 4 HOH B 34 87 50 HOH HOH . F 4 HOH B 35 88 88 HOH HOH . F 4 HOH B 36 89 53 HOH HOH . F 4 HOH B 37 90 90 HOH HOH . F 4 HOH B 38 91 91 HOH HOH . F 4 HOH B 39 93 93 HOH HOH . F 4 HOH B 40 98 98 HOH HOH . F 4 HOH B 41 99 99 HOH HOH . F 4 HOH B 42 103 103 HOH HOH . F 4 HOH B 43 106 106 HOH HOH . F 4 HOH B 44 107 107 HOH HOH . F 4 HOH B 45 108 108 HOH HOH . F 4 HOH B 46 109 109 HOH HOH . F 4 HOH B 47 110 110 HOH HOH . F 4 HOH B 48 112 112 HOH HOH . F 4 HOH B 49 114 114 HOH HOH . F 4 HOH B 50 116 116 HOH HOH . F 4 HOH B 51 117 117 HOH HOH . F 4 HOH B 52 118 118 HOH HOH . F 4 HOH B 53 120 120 HOH HOH . F 4 HOH B 54 121 121 HOH HOH . F 4 HOH B 55 122 122 HOH HOH . F 4 HOH B 56 124 124 HOH HOH . F 4 HOH B 57 126 126 HOH HOH . F 4 HOH B 58 129 129 HOH HOH . F 4 HOH B 59 130 130 HOH HOH . F 4 HOH B 60 131 131 HOH HOH . F 4 HOH B 61 132 132 HOH HOH . F 4 HOH B 62 133 133 HOH HOH . F 4 HOH B 63 136 136 HOH HOH . F 4 HOH B 64 138 138 HOH HOH . F 4 HOH B 65 139 139 HOH HOH . F 4 HOH B 66 142 142 HOH HOH . F 4 HOH B 67 143 143 HOH HOH . F 4 HOH B 68 148 148 HOH HOH . F 4 HOH B 69 149 149 HOH HOH . F 4 HOH B 70 153 153 HOH HOH . F 4 HOH B 71 154 154 HOH HOH . F 4 HOH B 72 156 156 HOH HOH . F 4 HOH B 73 157 157 HOH HOH . F 4 HOH B 74 158 158 HOH HOH . F 4 HOH B 75 161 161 HOH HOH . F 4 HOH B 76 162 162 HOH HOH . F 4 HOH B 77 163 163 HOH HOH . F 4 HOH B 78 164 164 HOH HOH . F 4 HOH B 79 166 166 HOH HOH . F 4 HOH B 80 167 167 HOH HOH . F 4 HOH B 81 168 168 HOH HOH . F 4 HOH B 82 169 169 HOH HOH . F 4 HOH B 83 170 170 HOH HOH . F 4 HOH B 84 171 171 HOH HOH . F 4 HOH B 85 173 173 HOH HOH . F 4 HOH B 86 175 175 HOH HOH . F 4 HOH B 87 179 179 HOH HOH . F 4 HOH B 88 181 181 HOH HOH . F 4 HOH B 89 182 182 HOH HOH . F 4 HOH B 90 183 183 HOH HOH . F 4 HOH B 91 184 184 HOH HOH . F 4 HOH B 92 185 185 HOH HOH . F 4 HOH B 93 192 192 HOH HOH . F 4 HOH B 94 193 193 HOH HOH . F 4 HOH B 95 197 197 HOH HOH . F 4 HOH B 96 199 199 HOH HOH . F 4 HOH B 97 201 201 HOH HOH . F 4 HOH B 98 203 203 HOH HOH . F 4 HOH B 99 204 204 HOH HOH . F 4 HOH B 100 205 205 HOH HOH . F 4 HOH B 101 207 207 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 -19.742 -4.582 48.522 0.5 21.61 ? C1 GOL 53 A 1 HETATM 2 O O1 GOL . . . C 2 -18.585 -5.291 48.888 0.5 20.59 ? O1 GOL 53 A 1 HETATM 3 C C2 GOL . . . C 2 -19.563 -3.072 48.588 0.5 21.96 ? C2 GOL 53 A 1 HETATM 4 O O2 GOL . . . C 2 -18.231 -2.635 48.69 0.5 21.25 ? O2 GOL 53 A 1 HETATM 5 C C3 GOL . . . C 2 -20.517 -2.362 49.537 0.5 20.86 ? C3 GOL 53 A 1 HETATM 6 O O3 GOL . . . C 2 -19.829 -1.672 50.554 0.5 22.25 ? O3 GOL 53 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #