data_3ONI
#
_model_server_result.job_id            XzOn4UkzRxhlnN5ULaupUg 
_model_server_result.datetime_utc      '2024-11-05 21:27:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3oni 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":2}' 
#
_entry.id    3ONI 
#
_exptl.entry_id    3ONI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              58.693 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NICKEL (II) ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3ONI 
_cell.length_a            52.6 
_cell.length_b            71.71 
_cell.length_c            31.97 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3ONI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G 1 1 
A,B,C,D,E,F,G 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 52.6 71.71 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
_struct_conn.conn_type_id                   metalc 
_struct_conn.details                        ? 
_struct_conn.id                             metalc1 
_struct_conn.ptnr1_label_asym_id            D 
_struct_conn.ptnr1_label_atom_id            NI 
_struct_conn.ptnr1_label_comp_id            NI 
_struct_conn.ptnr1_label_seq_id             . 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             NI 
_struct_conn.ptnr1_auth_seq_id              2 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            G 
_struct_conn.ptnr2_label_atom_id            O 
_struct_conn.ptnr2_label_comp_id            HOH 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             HOH 
_struct_conn.ptnr2_auth_seq_id              131 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.645 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'Ni 2' 
_chem_comp.formula_weight    58.693 
_chem_comp.id                NI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NICKEL (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3ONI 
_atom_sites.fract_transf_matrix[1][1]    0.019011 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013945 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.031279 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 JQ1 A 1 1 1 JQ1 JQ1 . 
C 3 NI A 1 456 1 NI NI . 
D 3 NI A 1 2 2 NI NI . 
E 4 EDO A 1 457 1 EDO EDO . 
F 4 EDO A 1 458 2 EDO EDO . 
G 5 HOH A 1 3 3 HOH HOH . 
G 5 HOH A 2 4 4 HOH HOH . 
G 5 HOH A 3 5 5 HOH HOH . 
G 5 HOH A 4 6 6 HOH HOH . 
G 5 HOH A 5 7 7 HOH HOH . 
G 5 HOH A 6 8 8 HOH HOH . 
G 5 HOH A 7 9 9 HOH HOH . 
G 5 HOH A 8 10 10 HOH HOH . 
G 5 HOH A 9 11 11 HOH HOH . 
G 5 HOH A 10 12 12 HOH HOH . 
G 5 HOH A 11 13 13 HOH HOH . 
G 5 HOH A 12 14 14 HOH HOH . 
G 5 HOH A 13 15 15 HOH HOH . 
G 5 HOH A 14 16 16 HOH HOH . 
G 5 HOH A 15 17 17 HOH HOH . 
G 5 HOH A 16 18 18 HOH HOH . 
G 5 HOH A 17 19 19 HOH HOH . 
G 5 HOH A 18 20 20 HOH HOH . 
G 5 HOH A 19 21 21 HOH HOH . 
G 5 HOH A 20 22 22 HOH HOH . 
G 5 HOH A 21 23 23 HOH HOH . 
G 5 HOH A 22 24 24 HOH HOH . 
G 5 HOH A 23 25 25 HOH HOH . 
G 5 HOH A 24 26 26 HOH HOH . 
G 5 HOH A 25 27 27 HOH HOH . 
G 5 HOH A 26 28 28 HOH HOH . 
G 5 HOH A 27 29 29 HOH HOH . 
G 5 HOH A 28 30 30 HOH HOH . 
G 5 HOH A 29 31 31 HOH HOH . 
G 5 HOH A 30 32 32 HOH HOH . 
G 5 HOH A 31 33 33 HOH HOH . 
G 5 HOH A 32 34 34 HOH HOH . 
G 5 HOH A 33 35 35 HOH HOH . 
G 5 HOH A 34 36 36 HOH HOH . 
G 5 HOH A 35 37 37 HOH HOH . 
G 5 HOH A 36 38 38 HOH HOH . 
G 5 HOH A 37 39 39 HOH HOH . 
G 5 HOH A 38 40 40 HOH HOH . 
G 5 HOH A 39 41 41 HOH HOH . 
G 5 HOH A 40 42 42 HOH HOH . 
G 5 HOH A 41 43 43 HOH HOH . 
G 5 HOH A 42 44 44 HOH HOH . 
G 5 HOH A 43 45 45 HOH HOH . 
G 5 HOH A 44 46 46 HOH HOH . 
G 5 HOH A 45 47 47 HOH HOH . 
G 5 HOH A 46 48 48 HOH HOH . 
G 5 HOH A 47 49 49 HOH HOH . 
G 5 HOH A 48 50 50 HOH HOH . 
G 5 HOH A 49 51 51 HOH HOH . 
G 5 HOH A 50 52 52 HOH HOH . 
G 5 HOH A 51 53 53 HOH HOH . 
G 5 HOH A 52 54 54 HOH HOH . 
G 5 HOH A 53 55 55 HOH HOH . 
G 5 HOH A 54 56 56 HOH HOH . 
G 5 HOH A 55 57 57 HOH HOH . 
G 5 HOH A 56 58 58 HOH HOH . 
G 5 HOH A 57 59 59 HOH HOH . 
G 5 HOH A 58 60 60 HOH HOH . 
G 5 HOH A 59 61 61 HOH HOH . 
G 5 HOH A 60 62 62 HOH HOH . 
G 5 HOH A 61 63 63 HOH HOH . 
G 5 HOH A 62 64 64 HOH HOH . 
G 5 HOH A 63 65 65 HOH HOH . 
G 5 HOH A 64 66 66 HOH HOH . 
G 5 HOH A 65 67 67 HOH HOH . 
G 5 HOH A 66 68 68 HOH HOH . 
G 5 HOH A 67 69 69 HOH HOH . 
G 5 HOH A 68 70 70 HOH HOH . 
G 5 HOH A 69 71 71 HOH HOH . 
G 5 HOH A 70 72 72 HOH HOH . 
G 5 HOH A 71 73 73 HOH HOH . 
G 5 HOH A 72 74 74 HOH HOH . 
G 5 HOH A 73 75 75 HOH HOH . 
G 5 HOH A 74 76 76 HOH HOH . 
G 5 HOH A 75 77 77 HOH HOH . 
G 5 HOH A 76 78 78 HOH HOH . 
G 5 HOH A 77 79 79 HOH HOH . 
G 5 HOH A 78 80 80 HOH HOH . 
G 5 HOH A 79 81 81 HOH HOH . 
G 5 HOH A 80 82 82 HOH HOH . 
G 5 HOH A 81 83 83 HOH HOH . 
G 5 HOH A 82 84 84 HOH HOH . 
G 5 HOH A 83 85 85 HOH HOH . 
G 5 HOH A 84 86 86 HOH HOH . 
G 5 HOH A 85 87 87 HOH HOH . 
G 5 HOH A 86 88 88 HOH HOH . 
G 5 HOH A 87 89 89 HOH HOH . 
G 5 HOH A 88 90 90 HOH HOH . 
G 5 HOH A 89 91 91 HOH HOH . 
G 5 HOH A 90 92 92 HOH HOH . 
G 5 HOH A 91 93 93 HOH HOH . 
G 5 HOH A 92 94 94 HOH HOH . 
G 5 HOH A 93 95 95 HOH HOH . 
G 5 HOH A 94 96 96 HOH HOH . 
G 5 HOH A 95 97 97 HOH HOH . 
G 5 HOH A 96 98 98 HOH HOH . 
G 5 HOH A 97 99 99 HOH HOH . 
G 5 HOH A 98 100 100 HOH HOH . 
G 5 HOH A 99 101 101 HOH HOH . 
G 5 HOH A 100 102 102 HOH HOH . 
G 5 HOH A 101 103 103 HOH HOH . 
G 5 HOH A 102 104 104 HOH HOH . 
G 5 HOH A 103 105 105 HOH HOH . 
G 5 HOH A 104 106 106 HOH HOH . 
G 5 HOH A 105 107 107 HOH HOH . 
G 5 HOH A 106 108 108 HOH HOH . 
G 5 HOH A 107 109 109 HOH HOH . 
G 5 HOH A 108 110 110 HOH HOH . 
G 5 HOH A 109 111 111 HOH HOH . 
G 5 HOH A 110 112 112 HOH HOH . 
G 5 HOH A 111 113 113 HOH HOH . 
G 5 HOH A 112 114 114 HOH HOH . 
G 5 HOH A 113 115 115 HOH HOH . 
G 5 HOH A 114 116 116 HOH HOH . 
G 5 HOH A 115 117 117 HOH HOH . 
G 5 HOH A 116 118 118 HOH HOH . 
G 5 HOH A 117 119 119 HOH HOH . 
G 5 HOH A 118 120 120 HOH HOH . 
G 5 HOH A 119 121 121 HOH HOH . 
G 5 HOH A 120 122 122 HOH HOH . 
G 5 HOH A 121 124 124 HOH HOH . 
G 5 HOH A 122 125 125 HOH HOH . 
G 5 HOH A 123 126 126 HOH HOH . 
G 5 HOH A 124 127 127 HOH HOH . 
G 5 HOH A 125 128 128 HOH HOH . 
G 5 HOH A 126 129 129 HOH HOH . 
G 5 HOH A 127 130 130 HOH HOH . 
G 5 HOH A 128 131 131 HOH HOH . 
G 5 HOH A 129 132 132 HOH HOH . 
G 5 HOH A 130 133 133 HOH HOH . 
G 5 HOH A 131 134 134 HOH HOH . 
G 5 HOH A 132 135 135 HOH HOH . 
G 5 HOH A 133 136 136 HOH HOH . 
G 5 HOH A 134 137 137 HOH HOH . 
G 5 HOH A 135 138 138 HOH HOH . 
G 5 HOH A 136 139 139 HOH HOH . 
G 5 HOH A 137 140 140 HOH HOH . 
G 5 HOH A 138 141 141 HOH HOH . 
G 5 HOH A 139 142 142 HOH HOH . 
G 5 HOH A 140 143 143 HOH HOH . 
G 5 HOH A 141 144 144 HOH HOH . 
G 5 HOH A 142 145 145 HOH HOH . 
G 5 HOH A 143 146 146 HOH HOH . 
G 5 HOH A 144 147 147 HOH HOH . 
G 5 HOH A 145 148 148 HOH HOH . 
G 5 HOH A 146 149 149 HOH HOH . 
G 5 HOH A 147 150 150 HOH HOH . 
G 5 HOH A 148 151 151 HOH HOH . 
G 5 HOH A 149 152 152 HOH HOH . 
G 5 HOH A 150 153 153 HOH HOH . 
G 5 HOH A 151 154 154 HOH HOH . 
G 5 HOH A 152 155 155 HOH HOH . 
G 5 HOH A 153 156 156 HOH HOH . 
G 5 HOH A 154 157 157 HOH HOH . 
G 5 HOH A 155 158 158 HOH HOH . 
G 5 HOH A 156 159 159 HOH HOH . 
G 5 HOH A 157 160 160 HOH HOH . 
G 5 HOH A 158 161 161 HOH HOH . 
G 5 HOH A 159 162 162 HOH HOH . 
G 5 HOH A 160 163 163 HOH HOH . 
G 5 HOH A 161 164 164 HOH HOH . 
G 5 HOH A 162 165 165 HOH HOH . 
G 5 HOH A 163 166 166 HOH HOH . 
G 5 HOH A 164 167 167 HOH HOH . 
G 5 HOH A 165 168 168 HOH HOH . 
G 5 HOH A 166 169 169 HOH HOH . 
G 5 HOH A 167 170 170 HOH HOH . 
G 5 HOH A 168 171 171 HOH HOH . 
G 5 HOH A 169 172 172 HOH HOH . 
G 5 HOH A 170 173 173 HOH HOH . 
G 5 HOH A 171 174 174 HOH HOH . 
G 5 HOH A 172 175 175 HOH HOH . 
G 5 HOH A 173 459 1 HOH HOH . 
G 5 HOH A 174 460 2 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NI 
_atom_site.label_atom_id         NI 
_atom_site.label_comp_id         NI 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               35.159 
_atom_site.Cartn_y               24.898 
_atom_site.Cartn_z               16.713 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        22.8 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NI 
_atom_site.auth_comp_id          NI 
_atom_site.auth_seq_id           2 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           335 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#