data_3ONI # _model_server_result.job_id drd-eKlWKkRksqV_SmhehQ _model_server_result.datetime_utc '2024-11-05 21:27:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3oni # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":457}' # _entry.id 3ONI # _exptl.entry_id 3ONI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3ONI _cell.length_a 52.6 _cell.length_b 71.71 _cell.length_c 31.97 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ONI _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1 A,B,C,D,E,F,G 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 52.6 71.71 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id D _struct_conn.ptnr1_label_atom_id NI _struct_conn.ptnr1_label_comp_id NI _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id NI _struct_conn.ptnr1_auth_seq_id 2 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id G _struct_conn.ptnr2_label_atom_id O _struct_conn.ptnr2_label_comp_id HOH _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HOH _struct_conn.ptnr2_auth_seq_id 131 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.645 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 3ONI _atom_sites.fract_transf_matrix[1][1] 0.019011 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013945 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.031279 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JQ1 A 1 1 1 JQ1 JQ1 . C 3 NI A 1 456 1 NI NI . D 3 NI A 1 2 2 NI NI . E 4 EDO A 1 457 1 EDO EDO . F 4 EDO A 1 458 2 EDO EDO . G 5 HOH A 1 3 3 HOH HOH . G 5 HOH A 2 4 4 HOH HOH . G 5 HOH A 3 5 5 HOH HOH . G 5 HOH A 4 6 6 HOH HOH . G 5 HOH A 5 7 7 HOH HOH . G 5 HOH A 6 8 8 HOH HOH . G 5 HOH A 7 9 9 HOH HOH . G 5 HOH A 8 10 10 HOH HOH . G 5 HOH A 9 11 11 HOH HOH . G 5 HOH A 10 12 12 HOH HOH . G 5 HOH A 11 13 13 HOH HOH . G 5 HOH A 12 14 14 HOH HOH . G 5 HOH A 13 15 15 HOH HOH . G 5 HOH A 14 16 16 HOH HOH . G 5 HOH A 15 17 17 HOH HOH . G 5 HOH A 16 18 18 HOH HOH . G 5 HOH A 17 19 19 HOH HOH . G 5 HOH A 18 20 20 HOH HOH . G 5 HOH A 19 21 21 HOH HOH . G 5 HOH A 20 22 22 HOH HOH . G 5 HOH A 21 23 23 HOH HOH . G 5 HOH A 22 24 24 HOH HOH . G 5 HOH A 23 25 25 HOH HOH . G 5 HOH A 24 26 26 HOH HOH . G 5 HOH A 25 27 27 HOH HOH . G 5 HOH A 26 28 28 HOH HOH . G 5 HOH A 27 29 29 HOH HOH . G 5 HOH A 28 30 30 HOH HOH . G 5 HOH A 29 31 31 HOH HOH . G 5 HOH A 30 32 32 HOH HOH . G 5 HOH A 31 33 33 HOH HOH . G 5 HOH A 32 34 34 HOH HOH . G 5 HOH A 33 35 35 HOH HOH . G 5 HOH A 34 36 36 HOH HOH . G 5 HOH A 35 37 37 HOH HOH . G 5 HOH A 36 38 38 HOH HOH . G 5 HOH A 37 39 39 HOH HOH . G 5 HOH A 38 40 40 HOH HOH . G 5 HOH A 39 41 41 HOH HOH . G 5 HOH A 40 42 42 HOH HOH . G 5 HOH A 41 43 43 HOH HOH . G 5 HOH A 42 44 44 HOH HOH . G 5 HOH A 43 45 45 HOH HOH . G 5 HOH A 44 46 46 HOH HOH . G 5 HOH A 45 47 47 HOH HOH . G 5 HOH A 46 48 48 HOH HOH . G 5 HOH A 47 49 49 HOH HOH . G 5 HOH A 48 50 50 HOH HOH . G 5 HOH A 49 51 51 HOH HOH . G 5 HOH A 50 52 52 HOH HOH . G 5 HOH A 51 53 53 HOH HOH . G 5 HOH A 52 54 54 HOH HOH . G 5 HOH A 53 55 55 HOH HOH . G 5 HOH A 54 56 56 HOH HOH . G 5 HOH A 55 57 57 HOH HOH . G 5 HOH A 56 58 58 HOH HOH . G 5 HOH A 57 59 59 HOH HOH . G 5 HOH A 58 60 60 HOH HOH . G 5 HOH A 59 61 61 HOH HOH . G 5 HOH A 60 62 62 HOH HOH . G 5 HOH A 61 63 63 HOH HOH . G 5 HOH A 62 64 64 HOH HOH . G 5 HOH A 63 65 65 HOH HOH . G 5 HOH A 64 66 66 HOH HOH . G 5 HOH A 65 67 67 HOH HOH . G 5 HOH A 66 68 68 HOH HOH . G 5 HOH A 67 69 69 HOH HOH . G 5 HOH A 68 70 70 HOH HOH . G 5 HOH A 69 71 71 HOH HOH . G 5 HOH A 70 72 72 HOH HOH . G 5 HOH A 71 73 73 HOH HOH . G 5 HOH A 72 74 74 HOH HOH . G 5 HOH A 73 75 75 HOH HOH . G 5 HOH A 74 76 76 HOH HOH . G 5 HOH A 75 77 77 HOH HOH . G 5 HOH A 76 78 78 HOH HOH . G 5 HOH A 77 79 79 HOH HOH . G 5 HOH A 78 80 80 HOH HOH . G 5 HOH A 79 81 81 HOH HOH . G 5 HOH A 80 82 82 HOH HOH . G 5 HOH A 81 83 83 HOH HOH . G 5 HOH A 82 84 84 HOH HOH . G 5 HOH A 83 85 85 HOH HOH . G 5 HOH A 84 86 86 HOH HOH . G 5 HOH A 85 87 87 HOH HOH . G 5 HOH A 86 88 88 HOH HOH . G 5 HOH A 87 89 89 HOH HOH . G 5 HOH A 88 90 90 HOH HOH . G 5 HOH A 89 91 91 HOH HOH . G 5 HOH A 90 92 92 HOH HOH . G 5 HOH A 91 93 93 HOH HOH . G 5 HOH A 92 94 94 HOH HOH . G 5 HOH A 93 95 95 HOH HOH . G 5 HOH A 94 96 96 HOH HOH . G 5 HOH A 95 97 97 HOH HOH . G 5 HOH A 96 98 98 HOH HOH . G 5 HOH A 97 99 99 HOH HOH . G 5 HOH A 98 100 100 HOH HOH . G 5 HOH A 99 101 101 HOH HOH . G 5 HOH A 100 102 102 HOH HOH . G 5 HOH A 101 103 103 HOH HOH . G 5 HOH A 102 104 104 HOH HOH . G 5 HOH A 103 105 105 HOH HOH . G 5 HOH A 104 106 106 HOH HOH . G 5 HOH A 105 107 107 HOH HOH . G 5 HOH A 106 108 108 HOH HOH . G 5 HOH A 107 109 109 HOH HOH . G 5 HOH A 108 110 110 HOH HOH . G 5 HOH A 109 111 111 HOH HOH . G 5 HOH A 110 112 112 HOH HOH . G 5 HOH A 111 113 113 HOH HOH . G 5 HOH A 112 114 114 HOH HOH . G 5 HOH A 113 115 115 HOH HOH . G 5 HOH A 114 116 116 HOH HOH . G 5 HOH A 115 117 117 HOH HOH . G 5 HOH A 116 118 118 HOH HOH . G 5 HOH A 117 119 119 HOH HOH . G 5 HOH A 118 120 120 HOH HOH . G 5 HOH A 119 121 121 HOH HOH . G 5 HOH A 120 122 122 HOH HOH . G 5 HOH A 121 124 124 HOH HOH . G 5 HOH A 122 125 125 HOH HOH . G 5 HOH A 123 126 126 HOH HOH . G 5 HOH A 124 127 127 HOH HOH . G 5 HOH A 125 128 128 HOH HOH . G 5 HOH A 126 129 129 HOH HOH . G 5 HOH A 127 130 130 HOH HOH . G 5 HOH A 128 131 131 HOH HOH . G 5 HOH A 129 132 132 HOH HOH . G 5 HOH A 130 133 133 HOH HOH . G 5 HOH A 131 134 134 HOH HOH . G 5 HOH A 132 135 135 HOH HOH . G 5 HOH A 133 136 136 HOH HOH . G 5 HOH A 134 137 137 HOH HOH . G 5 HOH A 135 138 138 HOH HOH . G 5 HOH A 136 139 139 HOH HOH . G 5 HOH A 137 140 140 HOH HOH . G 5 HOH A 138 141 141 HOH HOH . G 5 HOH A 139 142 142 HOH HOH . G 5 HOH A 140 143 143 HOH HOH . G 5 HOH A 141 144 144 HOH HOH . G 5 HOH A 142 145 145 HOH HOH . G 5 HOH A 143 146 146 HOH HOH . G 5 HOH A 144 147 147 HOH HOH . G 5 HOH A 145 148 148 HOH HOH . G 5 HOH A 146 149 149 HOH HOH . G 5 HOH A 147 150 150 HOH HOH . G 5 HOH A 148 151 151 HOH HOH . G 5 HOH A 149 152 152 HOH HOH . G 5 HOH A 150 153 153 HOH HOH . G 5 HOH A 151 154 154 HOH HOH . G 5 HOH A 152 155 155 HOH HOH . G 5 HOH A 153 156 156 HOH HOH . G 5 HOH A 154 157 157 HOH HOH . G 5 HOH A 155 158 158 HOH HOH . G 5 HOH A 156 159 159 HOH HOH . G 5 HOH A 157 160 160 HOH HOH . G 5 HOH A 158 161 161 HOH HOH . G 5 HOH A 159 162 162 HOH HOH . G 5 HOH A 160 163 163 HOH HOH . G 5 HOH A 161 164 164 HOH HOH . G 5 HOH A 162 165 165 HOH HOH . G 5 HOH A 163 166 166 HOH HOH . G 5 HOH A 164 167 167 HOH HOH . G 5 HOH A 165 168 168 HOH HOH . G 5 HOH A 166 169 169 HOH HOH . G 5 HOH A 167 170 170 HOH HOH . G 5 HOH A 168 171 171 HOH HOH . G 5 HOH A 169 172 172 HOH HOH . G 5 HOH A 170 173 173 HOH HOH . G 5 HOH A 171 174 174 HOH HOH . G 5 HOH A 172 175 175 HOH HOH . G 5 HOH A 173 459 1 HOH HOH . G 5 HOH A 174 460 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 4 36.77 35.131 -18.176 1 24.62 ? C1 EDO 457 A 1 HETATM 2 O O1 EDO . . . E 4 37.275 33.972 -18.839 1 19.55 ? O1 EDO 457 A 1 HETATM 3 C C2 EDO . . . E 4 36.766 35.022 -16.657 1 11.86 ? C2 EDO 457 A 1 HETATM 4 O O2 EDO . . . E 4 37.036 33.736 -16.115 1 12.79 ? O2 EDO 457 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #