data_3ONP # _model_server_result.job_id SSXh4HeuF5sqyLLZRKCg4w _model_server_result.datetime_utc '2024-11-26 01:28:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3onp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":250}' # _entry.id 3ONP # _exptl.entry_id 3ONP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 60.052 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3ONP _cell.length_a 74.782 _cell.length_b 74.782 _cell.length_c 139.105 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ONP _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 37.391 64.763112 23.184167 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLN 13 A GLN 13 1_555 A N MSE 14 A MSE 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale2 A C MSE 14 A MSE 14 1_555 A N GLY 15 A GLY 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale3 A C ALA 24 A ALA 24 1_555 A N MSE 25 A MSE 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale4 A C MSE 25 A MSE 25 1_555 A N LEU 26 A LEU 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale5 A C ALA 49 A ALA 49 1_555 A N MSE 50 A MSE 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale6 A C MSE 50 A MSE 50 1_555 A N ALA 51 A ALA 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale7 A C VAL 91 A VAL 91 1_555 A N MSE 92 A MSE 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale8 A C MSE 92 A MSE 92 1_555 A N THR 93 A THR 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale9 A C ALA 97 A ALA 97 1_555 A N MSE 98 A MSE 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale10 A C MSE 98 A MSE 98 1_555 A N ALA 99 A ALA 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale11 A SG CYS 74 A CYS 74 1_555 F S2 BME . A BME 254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? covale ? covale12 A SG CYS 150 A CYS 150 1_555 C S2 BME . A BME 251 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.009 ? covale ? covale13 A SG CYS 150 A CYS 150 1_555 C S2 BME . A BME 251 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.143 ? # _chem_comp.formula 'C2 H4 O2' _chem_comp.formula_weight 60.052 _chem_comp.id ACY _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3ONP _atom_sites.fract_transf_matrix[1][1] 0.013372 _atom_sites.fract_transf_matrix[1][2] 0.00772 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015441 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007189 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACY A 1 250 247 ACY ACY . C 3 BME A 1 251 248 BME BME . D 4 GOL A 1 252 249 GOL GOL . E 5 CL A 1 253 250 CL CL . F 3 BME A 1 254 251 BME BME . G 2 ACY A 1 255 255 ACY ACY . H 6 HOH A 1 256 1 HOH HOH . H 6 HOH A 2 257 2 HOH HOH . H 6 HOH A 3 258 3 HOH HOH . H 6 HOH A 4 259 4 HOH HOH . H 6 HOH A 5 260 5 HOH HOH . H 6 HOH A 6 261 6 HOH HOH . H 6 HOH A 7 262 7 HOH HOH . H 6 HOH A 8 263 8 HOH HOH . H 6 HOH A 9 264 9 HOH HOH . H 6 HOH A 10 265 10 HOH HOH . H 6 HOH A 11 266 11 HOH HOH . H 6 HOH A 12 267 12 HOH HOH . H 6 HOH A 13 268 13 HOH HOH . H 6 HOH A 14 269 14 HOH HOH . H 6 HOH A 15 270 15 HOH HOH . H 6 HOH A 16 271 16 HOH HOH . H 6 HOH A 17 272 17 HOH HOH . H 6 HOH A 18 273 18 HOH HOH . H 6 HOH A 19 274 19 HOH HOH . H 6 HOH A 20 275 20 HOH HOH . H 6 HOH A 21 276 21 HOH HOH . H 6 HOH A 22 277 22 HOH HOH . H 6 HOH A 23 278 23 HOH HOH . H 6 HOH A 24 279 24 HOH HOH . H 6 HOH A 25 280 25 HOH HOH . H 6 HOH A 26 281 26 HOH HOH . H 6 HOH A 27 282 27 HOH HOH . H 6 HOH A 28 283 28 HOH HOH . H 6 HOH A 29 284 29 HOH HOH . H 6 HOH A 30 285 30 HOH HOH . H 6 HOH A 31 286 31 HOH HOH . H 6 HOH A 32 287 32 HOH HOH . H 6 HOH A 33 288 33 HOH HOH . H 6 HOH A 34 289 34 HOH HOH . H 6 HOH A 35 290 35 HOH HOH . H 6 HOH A 36 291 36 HOH HOH . H 6 HOH A 37 292 37 HOH HOH . H 6 HOH A 38 293 38 HOH HOH . H 6 HOH A 39 294 39 HOH HOH . H 6 HOH A 40 295 40 HOH HOH . H 6 HOH A 41 296 41 HOH HOH . H 6 HOH A 42 297 42 HOH HOH . H 6 HOH A 43 298 43 HOH HOH . H 6 HOH A 44 299 44 HOH HOH . H 6 HOH A 45 300 45 HOH HOH . H 6 HOH A 46 301 46 HOH HOH . H 6 HOH A 47 302 47 HOH HOH . H 6 HOH A 48 303 48 HOH HOH . H 6 HOH A 49 304 49 HOH HOH . H 6 HOH A 50 305 50 HOH HOH . H 6 HOH A 51 306 51 HOH HOH . H 6 HOH A 52 307 52 HOH HOH . H 6 HOH A 53 308 53 HOH HOH . H 6 HOH A 54 309 54 HOH HOH . H 6 HOH A 55 310 55 HOH HOH . H 6 HOH A 56 311 56 HOH HOH . H 6 HOH A 57 312 57 HOH HOH . H 6 HOH A 58 313 58 HOH HOH . H 6 HOH A 59 314 59 HOH HOH . H 6 HOH A 60 315 60 HOH HOH . H 6 HOH A 61 316 61 HOH HOH . H 6 HOH A 62 317 62 HOH HOH . H 6 HOH A 63 318 63 HOH HOH . H 6 HOH A 64 319 64 HOH HOH . H 6 HOH A 65 320 65 HOH HOH . H 6 HOH A 66 321 66 HOH HOH . H 6 HOH A 67 322 67 HOH HOH . H 6 HOH A 68 323 68 HOH HOH . H 6 HOH A 69 324 69 HOH HOH . H 6 HOH A 70 325 70 HOH HOH . H 6 HOH A 71 326 71 HOH HOH . H 6 HOH A 72 327 72 HOH HOH . H 6 HOH A 73 328 73 HOH HOH . H 6 HOH A 74 329 74 HOH HOH . H 6 HOH A 75 330 75 HOH HOH . H 6 HOH A 76 331 76 HOH HOH . H 6 HOH A 77 332 77 HOH HOH . H 6 HOH A 78 333 78 HOH HOH . H 6 HOH A 79 334 79 HOH HOH . H 6 HOH A 80 335 80 HOH HOH . H 6 HOH A 81 336 81 HOH HOH . H 6 HOH A 82 337 82 HOH HOH . H 6 HOH A 83 338 83 HOH HOH . H 6 HOH A 84 339 84 HOH HOH . H 6 HOH A 85 340 85 HOH HOH . H 6 HOH A 86 341 86 HOH HOH . H 6 HOH A 87 342 87 HOH HOH . H 6 HOH A 88 343 88 HOH HOH . H 6 HOH A 89 344 89 HOH HOH . H 6 HOH A 90 345 90 HOH HOH . H 6 HOH A 91 346 91 HOH HOH . H 6 HOH A 92 347 92 HOH HOH . H 6 HOH A 93 348 93 HOH HOH . H 6 HOH A 94 349 94 HOH HOH . H 6 HOH A 95 350 95 HOH HOH . H 6 HOH A 96 351 96 HOH HOH . H 6 HOH A 97 352 97 HOH HOH . H 6 HOH A 98 353 98 HOH HOH . H 6 HOH A 99 354 99 HOH HOH . H 6 HOH A 100 355 100 HOH HOH . H 6 HOH A 101 356 101 HOH HOH . H 6 HOH A 102 357 102 HOH HOH . H 6 HOH A 103 358 103 HOH HOH . H 6 HOH A 104 359 104 HOH HOH . H 6 HOH A 105 360 105 HOH HOH . H 6 HOH A 106 361 106 HOH HOH . H 6 HOH A 107 362 107 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACY . . . B 2 3.19 30.858 18.524 1 83.89 ? C ACY 250 A 1 HETATM 2 O O ACY . . . B 2 3.082 30.07 17.542 1 83.46 ? O ACY 250 A 1 HETATM 3 O OXT ACY . . . B 2 3.814 31.947 18.522 1 83.59 ? OXT ACY 250 A 1 HETATM 4 C CH3 ACY . . . B 2 2.527 30.487 19.817 1 83.85 ? CH3 ACY 250 A 1 # _model_server_stats.io_time_ms 95 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 4 #