data_3ONP
#
_model_server_result.job_id            '_HDAmUa-gSBAwd1UIJ-4sA' 
_model_server_result.datetime_utc      '2024-11-29 13:46:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3onp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":254}' 
#
_entry.id    3ONP 
#
_exptl.entry_id    3ONP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            BETA-MERCAPTOETHANOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3ONP 
_cell.length_a            74.782 
_cell.length_b            74.782 
_cell.length_c            139.105 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3ONP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 37.391 64.763112 23.184167 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLN 13 A GLN 13 1_555 A N MSE 14 A MSE 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? 
covale ? covale2 A C MSE 14 A MSE 14 1_555 A N GLY 15 A GLY 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale3 A C ALA 24 A ALA 24 1_555 A N MSE 25 A MSE 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale4 A C MSE 25 A MSE 25 1_555 A N LEU 26 A LEU 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? 
covale ? covale5 A C ALA 49 A ALA 49 1_555 A N MSE 50 A MSE 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale6 A C MSE 50 A MSE 50 1_555 A N ALA 51 A ALA 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale7 A C VAL 91 A VAL 91 1_555 A N MSE 92 A MSE 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale8 A C MSE 92 A MSE 92 1_555 A N THR 93 A THR 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale9 A C ALA 97 A ALA 97 1_555 A N MSE 98 A MSE 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale10 A C MSE 98 A MSE 98 1_555 A N ALA 99 A ALA 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? 
covale ? covale11 A SG CYS 74 A CYS 74 1_555 F S2 BME . A BME 254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? 
covale ? covale12 A SG CYS 150 A CYS 150 1_555 C S2 BME . A BME 251 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.009 ? 
covale ? covale13 A SG CYS 150 A CYS 150 1_555 C S2 BME . A BME 251 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.143 ? 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                BME 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              BETA-MERCAPTOETHANOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3ONP 
_atom_sites.fract_transf_matrix[1][1]    0.013372 
_atom_sites.fract_transf_matrix[1][2]    0.00772 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015441 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007189 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ACY A 1 250 247 ACY ACY . 
C 3 BME A 1 251 248 BME BME . 
D 4 GOL A 1 252 249 GOL GOL . 
E 5 CL A 1 253 250 CL CL . 
F 3 BME A 1 254 251 BME BME . 
G 2 ACY A 1 255 255 ACY ACY . 
H 6 HOH A 1 256 1 HOH HOH . 
H 6 HOH A 2 257 2 HOH HOH . 
H 6 HOH A 3 258 3 HOH HOH . 
H 6 HOH A 4 259 4 HOH HOH . 
H 6 HOH A 5 260 5 HOH HOH . 
H 6 HOH A 6 261 6 HOH HOH . 
H 6 HOH A 7 262 7 HOH HOH . 
H 6 HOH A 8 263 8 HOH HOH . 
H 6 HOH A 9 264 9 HOH HOH . 
H 6 HOH A 10 265 10 HOH HOH . 
H 6 HOH A 11 266 11 HOH HOH . 
H 6 HOH A 12 267 12 HOH HOH . 
H 6 HOH A 13 268 13 HOH HOH . 
H 6 HOH A 14 269 14 HOH HOH . 
H 6 HOH A 15 270 15 HOH HOH . 
H 6 HOH A 16 271 16 HOH HOH . 
H 6 HOH A 17 272 17 HOH HOH . 
H 6 HOH A 18 273 18 HOH HOH . 
H 6 HOH A 19 274 19 HOH HOH . 
H 6 HOH A 20 275 20 HOH HOH . 
H 6 HOH A 21 276 21 HOH HOH . 
H 6 HOH A 22 277 22 HOH HOH . 
H 6 HOH A 23 278 23 HOH HOH . 
H 6 HOH A 24 279 24 HOH HOH . 
H 6 HOH A 25 280 25 HOH HOH . 
H 6 HOH A 26 281 26 HOH HOH . 
H 6 HOH A 27 282 27 HOH HOH . 
H 6 HOH A 28 283 28 HOH HOH . 
H 6 HOH A 29 284 29 HOH HOH . 
H 6 HOH A 30 285 30 HOH HOH . 
H 6 HOH A 31 286 31 HOH HOH . 
H 6 HOH A 32 287 32 HOH HOH . 
H 6 HOH A 33 288 33 HOH HOH . 
H 6 HOH A 34 289 34 HOH HOH . 
H 6 HOH A 35 290 35 HOH HOH . 
H 6 HOH A 36 291 36 HOH HOH . 
H 6 HOH A 37 292 37 HOH HOH . 
H 6 HOH A 38 293 38 HOH HOH . 
H 6 HOH A 39 294 39 HOH HOH . 
H 6 HOH A 40 295 40 HOH HOH . 
H 6 HOH A 41 296 41 HOH HOH . 
H 6 HOH A 42 297 42 HOH HOH . 
H 6 HOH A 43 298 43 HOH HOH . 
H 6 HOH A 44 299 44 HOH HOH . 
H 6 HOH A 45 300 45 HOH HOH . 
H 6 HOH A 46 301 46 HOH HOH . 
H 6 HOH A 47 302 47 HOH HOH . 
H 6 HOH A 48 303 48 HOH HOH . 
H 6 HOH A 49 304 49 HOH HOH . 
H 6 HOH A 50 305 50 HOH HOH . 
H 6 HOH A 51 306 51 HOH HOH . 
H 6 HOH A 52 307 52 HOH HOH . 
H 6 HOH A 53 308 53 HOH HOH . 
H 6 HOH A 54 309 54 HOH HOH . 
H 6 HOH A 55 310 55 HOH HOH . 
H 6 HOH A 56 311 56 HOH HOH . 
H 6 HOH A 57 312 57 HOH HOH . 
H 6 HOH A 58 313 58 HOH HOH . 
H 6 HOH A 59 314 59 HOH HOH . 
H 6 HOH A 60 315 60 HOH HOH . 
H 6 HOH A 61 316 61 HOH HOH . 
H 6 HOH A 62 317 62 HOH HOH . 
H 6 HOH A 63 318 63 HOH HOH . 
H 6 HOH A 64 319 64 HOH HOH . 
H 6 HOH A 65 320 65 HOH HOH . 
H 6 HOH A 66 321 66 HOH HOH . 
H 6 HOH A 67 322 67 HOH HOH . 
H 6 HOH A 68 323 68 HOH HOH . 
H 6 HOH A 69 324 69 HOH HOH . 
H 6 HOH A 70 325 70 HOH HOH . 
H 6 HOH A 71 326 71 HOH HOH . 
H 6 HOH A 72 327 72 HOH HOH . 
H 6 HOH A 73 328 73 HOH HOH . 
H 6 HOH A 74 329 74 HOH HOH . 
H 6 HOH A 75 330 75 HOH HOH . 
H 6 HOH A 76 331 76 HOH HOH . 
H 6 HOH A 77 332 77 HOH HOH . 
H 6 HOH A 78 333 78 HOH HOH . 
H 6 HOH A 79 334 79 HOH HOH . 
H 6 HOH A 80 335 80 HOH HOH . 
H 6 HOH A 81 336 81 HOH HOH . 
H 6 HOH A 82 337 82 HOH HOH . 
H 6 HOH A 83 338 83 HOH HOH . 
H 6 HOH A 84 339 84 HOH HOH . 
H 6 HOH A 85 340 85 HOH HOH . 
H 6 HOH A 86 341 86 HOH HOH . 
H 6 HOH A 87 342 87 HOH HOH . 
H 6 HOH A 88 343 88 HOH HOH . 
H 6 HOH A 89 344 89 HOH HOH . 
H 6 HOH A 90 345 90 HOH HOH . 
H 6 HOH A 91 346 91 HOH HOH . 
H 6 HOH A 92 347 92 HOH HOH . 
H 6 HOH A 93 348 93 HOH HOH . 
H 6 HOH A 94 349 94 HOH HOH . 
H 6 HOH A 95 350 95 HOH HOH . 
H 6 HOH A 96 351 96 HOH HOH . 
H 6 HOH A 97 352 97 HOH HOH . 
H 6 HOH A 98 353 98 HOH HOH . 
H 6 HOH A 99 354 99 HOH HOH . 
H 6 HOH A 100 355 100 HOH HOH . 
H 6 HOH A 101 356 101 HOH HOH . 
H 6 HOH A 102 357 102 HOH HOH . 
H 6 HOH A 103 358 103 HOH HOH . 
H 6 HOH A 104 359 104 HOH HOH . 
H 6 HOH A 105 360 105 HOH HOH . 
H 6 HOH A 106 361 106 HOH HOH . 
H 6 HOH A 107 362 107 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BME . . . F 3 4.34 14.879 4.966 1 64.12 ? C1 BME 254 A 1 
HETATM 2 C C2 BME . . . F 3 4.148 14.259 6.35 1 65.09 ? C2 BME 254 A 1 
HETATM 3 O O1 BME . . . F 3 5.002 13.943 4.112 1 66.5 ? O1 BME 254 A 1 
HETATM 4 S S2 BME . . . F 3 5.217 15.105 7.545 1 57.78 ? S2 BME 254 A 1 
#
_model_server_stats.io_time_ms              57 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#