data_3OO5 # _model_server_result.job_id apJY_M6xfKNTUcEUK9hVVA _model_server_result.datetime_utc '2025-06-21 01:09:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3oo5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":142}' # _entry.id 3OO5 # _exptl.entry_id 3OO5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 661.485 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "[3,3'-{7-ethenyl-3,8,13,17-tetramethyl-12-[(E)-2-nitroethenyl]porphyrin-2,18-diyl-kappa~4~N~21~,N~22~,N~23~,N~24~}dipro panoato(2-)]iron" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3OO5 _cell.length_a 53.499 _cell.length_b 53.499 _cell.length_c 192.221 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OO5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 87 A HIS 87 1_555 C FE NTE . A NTE 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc2 C FE NTE . A NTE 142 1_555 D O1 NO2 . A NO2 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.936 ? metalc ? metalc3 C FE NTE . A NTE 142 1_555 D N NO2 . A NO2 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.666 ? metalc ? metalc4 B NE2 HIS 92 B HIS 92 1_555 E FE NTE . B NTE 147 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.215 ? # _chem_comp.formula 'C34 H31 Fe N5 O6' _chem_comp.formula_weight 661.485 _chem_comp.id NTE _chem_comp.mon_nstd_flag . _chem_comp.name "[3,3'-{7-ethenyl-3,8,13,17-tetramethyl-12-[(E)-2-nitroethenyl]porphyrin-2,18-diyl-kappa~4~N~21~,N~22~,N~23~,N~24~}dipro panoato(2-)]iron" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Nitriheme # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N FE NTE sing 218 n n N C1C NTE sing 219 n y N C4C NTE sing 220 n y FE NA NTE sing 221 n n FE NB NTE sing 222 n n FE ND NTE sing 223 n n O1 NC NTE sing 224 n n O2 NC NTE doub 225 n n NA C1A NTE sing 226 n y NA C4A NTE sing 227 n y NB C1B NTE sing 228 n n NB C4B NTE doub 229 n n NC CBB NTE sing 230 n n ND C1D NTE doub 231 n n ND C4D NTE sing 232 n n C1A C2A NTE doub 233 n y C1A CHA NTE sing 234 n n O1A CGA NTE sing 235 n n C1B C2B NTE sing 236 n n C1B CHB NTE doub 237 n n C1C C2C NTE sing 238 n y C1C CHC NTE doub 239 n n C1D C2D NTE sing 240 n n C1D CHD NTE sing 241 n n O1D CGD NTE doub 242 n n C2A C3A NTE sing 243 n y C2A CAA NTE sing 244 n n O2A CGA NTE doub 245 n n C2B C3B NTE doub 246 n n C2B CMB NTE sing 247 n n C2C C3C NTE doub 248 n y C2C CMC NTE sing 249 n n C2D C3D NTE doub 250 n n C2D CMD NTE sing 251 n n O2D CGD NTE sing 252 n n C3A C4A NTE doub 253 n y C3A CMA NTE sing 254 n n C3B C4B NTE sing 255 n n C3B CAB NTE sing 256 n n C3C C4C NTE sing 257 n y C3C CAC NTE sing 258 n n C3D C4D NTE sing 259 n n C3D CAD NTE sing 260 n n C4A CHB NTE sing 261 n n C4B CHC NTE sing 262 n n C4C CHD NTE doub 263 n n C4D CHA NTE doub 264 n n CAA CBA NTE sing 265 n n CAB CBB NTE doub 266 e n CAC CBC NTE doub 267 n n CAD CBD NTE sing 268 n n CBA CGA NTE sing 269 n n CBD CGD NTE sing 270 n n O1A H1 NTE sing 271 n n O2D H2 NTE sing 272 n n CAA HAA NTE sing 273 n n CAA HAAA NTE sing 274 n n CAB HAB NTE sing 275 n n CAC HAC NTE sing 276 n n CAD HAD NTE sing 277 n n CAD HADA NTE sing 278 n n CBA HBA NTE sing 279 n n CBA HBAA NTE sing 280 n n CBB HBB NTE sing 281 n n CBC HBC NTE sing 282 n n CBC HBCA NTE sing 283 n n CBD HBD NTE sing 284 n n CBD HBDA NTE sing 285 n n CHA HHA NTE sing 286 n n CHB HHB NTE sing 287 n n CHC HHC NTE sing 288 n n CHD HHD NTE sing 289 n n CMA HMA NTE sing 290 n n CMA HMAA NTE sing 291 n n CMA HMAB NTE sing 292 n n CMB HMB NTE sing 293 n n CMB HMBA NTE sing 294 n n CMB HMBB NTE sing 295 n n CMC HMC NTE sing 296 n n CMC HMCA NTE sing 297 n n CMC HMCB NTE sing 298 n n CMD HMD NTE sing 299 n n CMD HMDA NTE sing 300 n n CMD HMDB NTE sing 301 n n # _atom_sites.entry_id 3OO5 _atom_sites.fract_transf_matrix[1][1] 0.018692 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018692 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005202 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NTE A 1 142 142 NTE NTE . D 4 NO2 A 1 143 143 NO2 NO2 . E 3 NTE B 1 147 147 NTE NTE . F 5 HOH A 1 144 144 HOH HOH . F 5 HOH A 2 145 145 HOH HOH . F 5 HOH A 3 146 146 HOH HOH . F 5 HOH A 4 147 147 HOH HOH . F 5 HOH A 5 148 148 HOH HOH . F 5 HOH A 6 149 149 HOH HOH . F 5 HOH A 7 150 150 HOH HOH . F 5 HOH A 8 151 151 HOH HOH . F 5 HOH A 9 152 152 HOH HOH . F 5 HOH A 10 153 153 HOH HOH . F 5 HOH A 11 154 154 HOH HOH . F 5 HOH A 12 155 155 HOH HOH . F 5 HOH A 13 156 156 HOH HOH . F 5 HOH A 14 157 157 HOH HOH . F 5 HOH A 15 158 158 HOH HOH . F 5 HOH A 16 159 159 HOH HOH . F 5 HOH A 17 160 160 HOH HOH . F 5 HOH A 18 161 161 HOH HOH . F 5 HOH A 19 162 162 HOH HOH . F 5 HOH A 20 163 163 HOH HOH . F 5 HOH A 21 164 164 HOH HOH . F 5 HOH A 22 165 165 HOH HOH . F 5 HOH A 23 166 166 HOH HOH . F 5 HOH A 24 167 167 HOH HOH . F 5 HOH A 25 168 168 HOH HOH . F 5 HOH A 26 169 169 HOH HOH . F 5 HOH A 27 170 170 HOH HOH . F 5 HOH A 28 171 171 HOH HOH . F 5 HOH A 29 172 172 HOH HOH . G 5 HOH B 1 148 148 HOH HOH . G 5 HOH B 2 149 149 HOH HOH . G 5 HOH B 3 150 150 HOH HOH . G 5 HOH B 4 151 151 HOH HOH . G 5 HOH B 5 152 152 HOH HOH . G 5 HOH B 6 153 153 HOH HOH . G 5 HOH B 7 154 154 HOH HOH . G 5 HOH B 8 155 155 HOH HOH . G 5 HOH B 9 156 156 HOH HOH . G 5 HOH B 10 157 157 HOH HOH . G 5 HOH B 11 158 158 HOH HOH . G 5 HOH B 12 159 159 HOH HOH . G 5 HOH B 13 160 160 HOH HOH . G 5 HOH B 14 161 161 HOH HOH . G 5 HOH B 15 162 162 HOH HOH . G 5 HOH B 16 163 163 HOH HOH . G 5 HOH B 17 164 164 HOH HOH . G 5 HOH B 18 165 165 HOH HOH . G 5 HOH B 19 166 166 HOH HOH . G 5 HOH B 20 167 167 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N NTE . . . C 3 12.013 0.835 13.896 1 34.37 ? N NTE 142 A 1 HETATM 2 FE FE NTE . . . C 3 13.508 1.778 15.002 1 37.58 ? FE NTE 142 A 1 HETATM 3 O O1 NTE . . . C 3 8.466 8.433 11.894 0.8 36.32 ? O1 NTE 142 A 1 HETATM 4 O O2 NTE . . . C 3 7.944 6.379 11.714 0.8 35 ? O2 NTE 142 A 1 HETATM 5 N NA NTE . . . C 3 14.899 2.736 16.242 1 36.92 ? NA NTE 142 A 1 HETATM 6 N NB NTE . . . C 3 12.626 3.639 14.612 1 36.2 ? NB NTE 142 A 1 HETATM 7 N NC NTE . . . C 3 8.691 7.261 12.135 0.8 41.35 ? NC NTE 142 A 1 HETATM 8 N ND NTE . . . C 3 14.321 -0.081 15.504 1 40.31 ? ND NTE 142 A 1 HETATM 9 C C1A NTE . . . C 3 15.914 2.139 16.874 1 36.36 ? C1A NTE 142 A 1 HETATM 10 O O1A NTE . . . C 3 20.15 2.385 19.87 1 61.05 ? O1A NTE 142 A 1 HETATM 11 C C1B NTE . . . C 3 12.975 4.83 15.145 1 37.74 ? C1B NTE 142 A 1 HETATM 12 C C1C NTE . . . C 3 11.069 1.455 13.179 1 34.51 ? C1C NTE 142 A 1 HETATM 13 C C1D NTE . . . C 3 13.811 -1.274 15.179 1 37.35 ? C1D NTE 142 A 1 HETATM 14 O O1D NTE . . . C 3 17.274 -2.639 20.637 1 52.41 ? O1D NTE 142 A 1 HETATM 15 C C2A NTE . . . C 3 16.683 3.116 17.693 1 37.43 ? C2A NTE 142 A 1 HETATM 16 O O2A NTE . . . C 3 21.498 3.026 18.245 1 67.86 ? O2A NTE 142 A 1 HETATM 17 C C2B NTE . . . C 3 12.116 5.923 14.629 1 37.73 ? C2B NTE 142 A 1 HETATM 18 C C2C NTE . . . C 3 10.155 0.474 12.534 1 33.24 ? C2C NTE 142 A 1 HETATM 19 C C2D NTE . . . C 3 14.643 -2.369 15.739 1 39.55 ? C2D NTE 142 A 1 HETATM 20 O O2D NTE . . . C 3 17.77 -4.289 19.259 1 59.63 ? O2D NTE 142 A 1 HETATM 21 C C3A NTE . . . C 3 16.04 4.322 17.506 1 37.51 ? C3A NTE 142 A 1 HETATM 22 C C3B NTE . . . C 3 11.257 5.294 13.749 1 35.11 ? C3B NTE 142 A 1 HETATM 23 C C3C NTE . . . C 3 10.626 -0.765 12.968 1 35.37 ? C3C NTE 142 A 1 HETATM 24 C C3D NTE . . . C 3 15.684 -1.743 16.396 1 43.58 ? C3D NTE 142 A 1 HETATM 25 C C4A NTE . . . C 3 14.917 4.032 16.573 1 33.53 ? C4A NTE 142 A 1 HETATM 26 C C4B NTE . . . C 3 11.615 3.855 13.778 1 34.03 ? C4B NTE 142 A 1 HETATM 27 C C4C NTE . . . C 3 11.813 -0.483 13.81 1 36.5 ? C4C NTE 142 A 1 HETATM 28 C C4D NTE . . . C 3 15.419 -0.283 16.228 1 37.53 ? C4D NTE 142 A 1 HETATM 29 C CAA NTE . . . C 3 17.893 2.806 18.557 1 39.39 ? CAA NTE 142 A 1 HETATM 30 C CAB NTE . . . C 3 10.129 5.738 12.896 1 30.39 ? CAB NTE 142 A 1 HETATM 31 C CAC NTE . . . C 3 10.198 -2.171 12.712 1 37.07 ? CAC NTE 142 A 1 HETATM 32 C CAD NTE . . . C 3 16.817 -2.397 17.175 1 41.21 ? CAD NTE 142 A 1 HETATM 33 C CBA NTE . . . C 3 19.163 3.343 17.904 1 52.46 ? CBA NTE 142 A 1 HETATM 34 C CBB NTE . . . C 3 9.684 6.969 12.865 1 35.37 ? CBB NTE 142 A 1 HETATM 35 C CBC NTE . . . C 3 8.956 -2.539 12.978 1 36.83 ? CBC NTE 142 A 1 HETATM 36 C CBD NTE . . . C 3 16.193 -2.673 18.533 1 41.33 ? CBD NTE 142 A 1 HETATM 37 C CGA NTE . . . C 3 20.352 2.886 18.733 1 63.42 ? CGA NTE 142 A 1 HETATM 38 C CGD NTE . . . C 3 17.16 -3.231 19.541 1 50.98 ? CGD NTE 142 A 1 HETATM 39 C CHA NTE . . . C 3 16.31 0.719 16.838 1 40.03 ? CHA NTE 142 A 1 HETATM 40 C CHB NTE . . . C 3 14.027 5.129 16.149 1 32.77 ? CHB NTE 142 A 1 HETATM 41 C CHC NTE . . . C 3 10.87 2.895 12.95 1 29.88 ? CHC NTE 142 A 1 HETATM 42 C CHD NTE . . . C 3 12.584 -1.588 14.421 1 38.76 ? CHD NTE 142 A 1 HETATM 43 C CMA NTE . . . C 3 16.365 5.675 18.09 1 39.81 ? CMA NTE 142 A 1 HETATM 44 C CMB NTE . . . C 3 12.194 7.383 14.984 1 34.03 ? CMB NTE 142 A 1 HETATM 45 C CMC NTE . . . C 3 8.986 0.811 11.648 1 33.76 ? CMC NTE 142 A 1 HETATM 46 C CMD NTE . . . C 3 14.386 -3.842 15.587 1 42.19 ? CMD NTE 142 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 46 #