data_3OO5 # _model_server_result.job_id VXrpk12E4s2br_SrFwlYQQ _model_server_result.datetime_utc '2025-08-20 03:31:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3oo5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":143}' # _entry.id 3OO5 # _exptl.entry_id 3OO5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 46.005 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NITRITE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3OO5 _cell.length_a 53.499 _cell.length_b 53.499 _cell.length_c 192.221 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OO5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 87 A HIS 87 1_555 C FE NTE . A NTE 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc2 C FE NTE . A NTE 142 1_555 D O1 NO2 . A NO2 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.936 ? metalc ? metalc3 C FE NTE . A NTE 142 1_555 D N NO2 . A NO2 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.666 ? metalc ? metalc4 B NE2 HIS 92 B HIS 92 1_555 E FE NTE . B NTE 147 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.215 ? # _chem_comp.formula 'N O2 -1' _chem_comp.formula_weight 46.005 _chem_comp.id NO2 _chem_comp.mon_nstd_flag . _chem_comp.name 'NITRITE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N O1 NO2 doub 216 n n N O2 NO2 sing 217 n n # _atom_sites.entry_id 3OO5 _atom_sites.fract_transf_matrix[1][1] 0.018692 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018692 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005202 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NTE A 1 142 142 NTE NTE . D 4 NO2 A 1 143 143 NO2 NO2 . E 3 NTE B 1 147 147 NTE NTE . F 5 HOH A 1 144 144 HOH HOH . F 5 HOH A 2 145 145 HOH HOH . F 5 HOH A 3 146 146 HOH HOH . F 5 HOH A 4 147 147 HOH HOH . F 5 HOH A 5 148 148 HOH HOH . F 5 HOH A 6 149 149 HOH HOH . F 5 HOH A 7 150 150 HOH HOH . F 5 HOH A 8 151 151 HOH HOH . F 5 HOH A 9 152 152 HOH HOH . F 5 HOH A 10 153 153 HOH HOH . F 5 HOH A 11 154 154 HOH HOH . F 5 HOH A 12 155 155 HOH HOH . F 5 HOH A 13 156 156 HOH HOH . F 5 HOH A 14 157 157 HOH HOH . F 5 HOH A 15 158 158 HOH HOH . F 5 HOH A 16 159 159 HOH HOH . F 5 HOH A 17 160 160 HOH HOH . F 5 HOH A 18 161 161 HOH HOH . F 5 HOH A 19 162 162 HOH HOH . F 5 HOH A 20 163 163 HOH HOH . F 5 HOH A 21 164 164 HOH HOH . F 5 HOH A 22 165 165 HOH HOH . F 5 HOH A 23 166 166 HOH HOH . F 5 HOH A 24 167 167 HOH HOH . F 5 HOH A 25 168 168 HOH HOH . F 5 HOH A 26 169 169 HOH HOH . F 5 HOH A 27 170 170 HOH HOH . F 5 HOH A 28 171 171 HOH HOH . F 5 HOH A 29 172 172 HOH HOH . G 5 HOH B 1 148 148 HOH HOH . G 5 HOH B 2 149 149 HOH HOH . G 5 HOH B 3 150 150 HOH HOH . G 5 HOH B 4 151 151 HOH HOH . G 5 HOH B 5 152 152 HOH HOH . G 5 HOH B 6 153 153 HOH HOH . G 5 HOH B 7 154 154 HOH HOH . G 5 HOH B 8 155 155 HOH HOH . G 5 HOH B 9 156 156 HOH HOH . G 5 HOH B 10 157 157 HOH HOH . G 5 HOH B 11 158 158 HOH HOH . G 5 HOH B 12 159 159 HOH HOH . G 5 HOH B 13 160 160 HOH HOH . G 5 HOH B 14 161 161 HOH HOH . G 5 HOH B 15 162 162 HOH HOH . G 5 HOH B 16 163 163 HOH HOH . G 5 HOH B 17 164 164 HOH HOH . G 5 HOH B 18 165 165 HOH HOH . G 5 HOH B 19 166 166 HOH HOH . G 5 HOH B 20 167 167 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N NO2 . . . D 4 11.205 1.843 16.343 1 35.41 ? N NO2 143 A 1 HETATM 2 O O1 NO2 . . . D 4 12.357 1.435 16.521 1 38.49 ? O1 NO2 143 A 1 HETATM 3 O O2 NO2 . . . D 4 10.492 1.192 17.113 1 38.67 ? O2 NO2 143 A 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 3 #