data_3OO5 # _model_server_result.job_id gDn11jYnHlhcSpRTCtisFQ _model_server_result.datetime_utc '2024-12-22 05:55:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3oo5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":147}' # _entry.id 3OO5 # _exptl.entry_id 3OO5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 661.485 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "[3,3'-{7-ethenyl-3,8,13,17-tetramethyl-12-[(E)-2-nitroethenyl]porphyrin-2,18-diyl-kappa~4~N~21~,N~22~,N~23~,N~24~}dipro panoato(2-)]iron" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3OO5 _cell.length_a 53.499 _cell.length_b 53.499 _cell.length_c 192.221 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OO5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 87 A HIS 87 1_555 C FE NTE . A NTE 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc2 C FE NTE . A NTE 142 1_555 D O1 NO2 . A NO2 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.936 ? metalc ? metalc3 C FE NTE . A NTE 142 1_555 D N NO2 . A NO2 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.666 ? metalc ? metalc4 B NE2 HIS 92 B HIS 92 1_555 E FE NTE . B NTE 147 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.215 ? # _chem_comp.formula 'C34 H31 Fe N5 O6' _chem_comp.formula_weight 661.485 _chem_comp.id NTE _chem_comp.mon_nstd_flag . _chem_comp.name "[3,3'-{7-ethenyl-3,8,13,17-tetramethyl-12-[(E)-2-nitroethenyl]porphyrin-2,18-diyl-kappa~4~N~21~,N~22~,N~23~,N~24~}dipro panoato(2-)]iron" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Nitriheme # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N FE NTE sing 218 n n N C1C NTE sing 219 n y N C4C NTE sing 220 n y FE NA NTE sing 221 n n FE NB NTE sing 222 n n FE ND NTE sing 223 n n O1 NC NTE sing 224 n n O2 NC NTE doub 225 n n NA C1A NTE sing 226 n y NA C4A NTE sing 227 n y NB C1B NTE sing 228 n n NB C4B NTE doub 229 n n NC CBB NTE sing 230 n n ND C1D NTE doub 231 n n ND C4D NTE sing 232 n n C1A C2A NTE doub 233 n y C1A CHA NTE sing 234 n n O1A CGA NTE sing 235 n n C1B C2B NTE sing 236 n n C1B CHB NTE doub 237 n n C1C C2C NTE sing 238 n y C1C CHC NTE doub 239 n n C1D C2D NTE sing 240 n n C1D CHD NTE sing 241 n n O1D CGD NTE doub 242 n n C2A C3A NTE sing 243 n y C2A CAA NTE sing 244 n n O2A CGA NTE doub 245 n n C2B C3B NTE doub 246 n n C2B CMB NTE sing 247 n n C2C C3C NTE doub 248 n y C2C CMC NTE sing 249 n n C2D C3D NTE doub 250 n n C2D CMD NTE sing 251 n n O2D CGD NTE sing 252 n n C3A C4A NTE doub 253 n y C3A CMA NTE sing 254 n n C3B C4B NTE sing 255 n n C3B CAB NTE sing 256 n n C3C C4C NTE sing 257 n y C3C CAC NTE sing 258 n n C3D C4D NTE sing 259 n n C3D CAD NTE sing 260 n n C4A CHB NTE sing 261 n n C4B CHC NTE sing 262 n n C4C CHD NTE doub 263 n n C4D CHA NTE doub 264 n n CAA CBA NTE sing 265 n n CAB CBB NTE doub 266 e n CAC CBC NTE doub 267 n n CAD CBD NTE sing 268 n n CBA CGA NTE sing 269 n n CBD CGD NTE sing 270 n n O1A H1 NTE sing 271 n n O2D H2 NTE sing 272 n n CAA HAA NTE sing 273 n n CAA HAAA NTE sing 274 n n CAB HAB NTE sing 275 n n CAC HAC NTE sing 276 n n CAD HAD NTE sing 277 n n CAD HADA NTE sing 278 n n CBA HBA NTE sing 279 n n CBA HBAA NTE sing 280 n n CBB HBB NTE sing 281 n n CBC HBC NTE sing 282 n n CBC HBCA NTE sing 283 n n CBD HBD NTE sing 284 n n CBD HBDA NTE sing 285 n n CHA HHA NTE sing 286 n n CHB HHB NTE sing 287 n n CHC HHC NTE sing 288 n n CHD HHD NTE sing 289 n n CMA HMA NTE sing 290 n n CMA HMAA NTE sing 291 n n CMA HMAB NTE sing 292 n n CMB HMB NTE sing 293 n n CMB HMBA NTE sing 294 n n CMB HMBB NTE sing 295 n n CMC HMC NTE sing 296 n n CMC HMCA NTE sing 297 n n CMC HMCB NTE sing 298 n n CMD HMD NTE sing 299 n n CMD HMDA NTE sing 300 n n CMD HMDB NTE sing 301 n n # _atom_sites.entry_id 3OO5 _atom_sites.fract_transf_matrix[1][1] 0.018692 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018692 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005202 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NTE A 1 142 142 NTE NTE . D 4 NO2 A 1 143 143 NO2 NO2 . E 3 NTE B 1 147 147 NTE NTE . F 5 HOH A 1 144 144 HOH HOH . F 5 HOH A 2 145 145 HOH HOH . F 5 HOH A 3 146 146 HOH HOH . F 5 HOH A 4 147 147 HOH HOH . F 5 HOH A 5 148 148 HOH HOH . F 5 HOH A 6 149 149 HOH HOH . F 5 HOH A 7 150 150 HOH HOH . F 5 HOH A 8 151 151 HOH HOH . F 5 HOH A 9 152 152 HOH HOH . F 5 HOH A 10 153 153 HOH HOH . F 5 HOH A 11 154 154 HOH HOH . F 5 HOH A 12 155 155 HOH HOH . F 5 HOH A 13 156 156 HOH HOH . F 5 HOH A 14 157 157 HOH HOH . F 5 HOH A 15 158 158 HOH HOH . F 5 HOH A 16 159 159 HOH HOH . F 5 HOH A 17 160 160 HOH HOH . F 5 HOH A 18 161 161 HOH HOH . F 5 HOH A 19 162 162 HOH HOH . F 5 HOH A 20 163 163 HOH HOH . F 5 HOH A 21 164 164 HOH HOH . F 5 HOH A 22 165 165 HOH HOH . F 5 HOH A 23 166 166 HOH HOH . F 5 HOH A 24 167 167 HOH HOH . F 5 HOH A 25 168 168 HOH HOH . F 5 HOH A 26 169 169 HOH HOH . F 5 HOH A 27 170 170 HOH HOH . F 5 HOH A 28 171 171 HOH HOH . F 5 HOH A 29 172 172 HOH HOH . G 5 HOH B 1 148 148 HOH HOH . G 5 HOH B 2 149 149 HOH HOH . G 5 HOH B 3 150 150 HOH HOH . G 5 HOH B 4 151 151 HOH HOH . G 5 HOH B 5 152 152 HOH HOH . G 5 HOH B 6 153 153 HOH HOH . G 5 HOH B 7 154 154 HOH HOH . G 5 HOH B 8 155 155 HOH HOH . G 5 HOH B 9 156 156 HOH HOH . G 5 HOH B 10 157 157 HOH HOH . G 5 HOH B 11 158 158 HOH HOH . G 5 HOH B 12 159 159 HOH HOH . G 5 HOH B 13 160 160 HOH HOH . G 5 HOH B 14 161 161 HOH HOH . G 5 HOH B 15 162 162 HOH HOH . G 5 HOH B 16 163 163 HOH HOH . G 5 HOH B 17 164 164 HOH HOH . G 5 HOH B 18 165 165 HOH HOH . G 5 HOH B 19 166 166 HOH HOH . G 5 HOH B 20 167 167 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N NTE . A . E 3 -15.349 7.156 -0.118 0.6 54.69 ? N NTE 147 B 1 HETATM 2 FE FE NTE . A . E 3 -17.399 6.856 0.214 0.6 55.27 ? FE NTE 147 B 1 HETATM 3 FE FE NTE . B . E 3 -21.799 7.406 -0.921 0.4 61.27 ? FE NTE 147 B 1 HETATM 4 O O1 NTE . A . E 3 -12.609 2.277 4.795 0.6 46.15 ? O1 NTE 147 B 1 HETATM 5 O O2 NTE . A . E 3 -13.692 1.651 6.509 0.6 49.36 ? O2 NTE 147 B 1 HETATM 6 N NA NTE . A . E 3 -19.439 6.54 0.581 0.6 56.09 ? NA NTE 147 B 1 HETATM 7 N NB NTE . A . E 3 -16.909 5.509 1.754 0.6 54.6 ? NB NTE 147 B 1 HETATM 8 N NC NTE . A . E 3 -13.645 2.228 5.43 0.6 45.13 ? NC NTE 147 B 1 HETATM 9 N ND NTE . A . E 3 -17.88 8.185 -1.323 0.6 57.64 ? ND NTE 147 B 1 HETATM 10 C C1A NTE . A . E 3 -20.475 7.081 -0.078 0.6 55.66 ? C1A NTE 147 B 1 HETATM 11 O O1A NTE . A . E 3 -25.795 6.754 -1.426 0.6 47.89 ? O1A NTE 147 B 1 HETATM 12 C C1B NTE . A . E 3 -17.782 4.853 2.532 0.6 52.94 ? C1B NTE 147 B 1 HETATM 13 C C1C NTE . A . E 3 -14.335 6.563 0.541 0.6 53.38 ? C1C NTE 147 B 1 HETATM 14 C C1D NTE . A . E 3 -16.996 8.862 -2.067 0.6 57.15 ? C1D NTE 147 B 1 HETATM 15 O O1D NTE . A . E 3 -23.322 10.132 -4.644 0.6 53.64 ? O1D NTE 147 B 1 HETATM 16 C C2A NTE . A . E 3 -21.776 6.593 0.502 0.6 57.49 ? C2A NTE 147 B 1 HETATM 17 O O2A NTE . A . E 3 -25.168 8.83 -1.647 0.6 53.27 ? O2A NTE 147 B 1 HETATM 18 C C2B NTE . A . E 3 -17.103 3.967 3.514 0.6 55.04 ? C2B NTE 147 B 1 HETATM 19 C C2C NTE . A . E 3 -13.015 7.026 0.043 0.6 49.86 ? C2C NTE 147 B 1 HETATM 20 C C2D NTE . A . E 3 -17.702 9.716 -3.055 0.6 59.19 ? C2D NTE 147 B 1 HETATM 21 O O2D NTE . A . E 3 -23.028 9.697 -2.518 0.6 59.95 ? O2D NTE 147 B 1 HETATM 22 C C3A NTE . A . E 3 -21.41 5.758 1.535 0.6 55.55 ? C3A NTE 147 B 1 HETATM 23 C C3B NTE . A . E 3 -15.757 4.154 3.255 0.6 49.28 ? C3B NTE 147 B 1 HETATM 24 C C3C NTE . A . E 3 -13.33 7.934 -0.953 0.6 55.27 ? C3C NTE 147 B 1 HETATM 25 C C3D NTE . A . E 3 -19.053 9.487 -2.851 0.6 57.14 ? C3D NTE 147 B 1 HETATM 26 C C4A NTE . A . E 3 -19.933 5.75 1.538 0.6 56.8 ? C4A NTE 147 B 1 HETATM 27 C C4B NTE . A . E 3 -15.68 5.131 2.137 0.6 51.31 ? C4B NTE 147 B 1 HETATM 28 C C4C NTE . A . E 3 -14.818 7.984 -1.03 0.6 54.53 ? C4C NTE 147 B 1 HETATM 29 C C4D NTE . A . E 3 -19.118 8.508 -1.728 0.6 57.8 ? C4D NTE 147 B 1 HETATM 30 C CAA NTE . A . E 3 -23.22 6.892 0.155 0.6 54.81 ? CAA NTE 147 B 1 HETATM 31 C CAB NTE . A . E 3 -14.548 3.561 3.877 0.6 45.69 ? CAB NTE 147 B 1 HETATM 32 C CAC NTE . A . E 3 -12.485 8.763 -1.852 0.6 56.58 ? CAC NTE 147 B 1 HETATM 33 C CAD NTE . A . E 3 -20.197 10.137 -3.599 0.6 54.88 ? CAD NTE 147 B 1 HETATM 34 C CBA NTE . A . E 3 -23.455 7.207 -1.316 0.6 60.21 ? CBA NTE 147 B 1 HETATM 35 C CBB NTE . A . E 3 -14.672 2.748 4.928 0.6 47.06 ? CBB NTE 147 B 1 HETATM 36 C CBC NTE . A . E 3 -11.218 8.99 -1.572 0.6 53.42 ? CBC NTE 147 B 1 HETATM 37 C CBD NTE . A . E 3 -21.262 9.116 -3.974 0.6 62.78 ? CBD NTE 147 B 1 HETATM 38 C CGA NTE . A . E 3 -24.903 7.624 -1.479 0.6 56.08 ? CGA NTE 147 B 1 HETATM 39 C CGD NTE . A . E 3 -22.635 9.687 -3.697 0.6 59.77 ? CGD NTE 147 B 1 HETATM 40 C CHA NTE . A . E 3 -20.422 8.022 -1.217 0.6 55.81 ? CHA NTE 147 B 1 HETATM 41 C CHB NTE . A . E 3 -19.25 4.909 2.531 0.6 56.12 ? CHB NTE 147 B 1 HETATM 42 C CHC NTE . A . E 3 -14.365 5.56 1.622 0.6 47.65 ? CHC NTE 147 B 1 HETATM 43 C CHD NTE . A . E 3 -15.514 8.861 -2.002 0.6 55.16 ? CHD NTE 147 B 1 HETATM 44 C CMA NTE . A . E 3 -22.308 4.986 2.46 0.6 56.09 ? CMA NTE 147 B 1 HETATM 45 C CMB NTE . A . E 3 -17.763 3.084 4.546 0.6 48.24 ? CMB NTE 147 B 1 HETATM 46 C CMC NTE . A . E 3 -11.674 6.575 0.551 0.6 46.77 ? CMC NTE 147 B 1 HETATM 47 C CMD NTE . A . E 3 -17.068 10.628 -4.07 0.6 56.77 ? CMD NTE 147 B 1 # _model_server_stats.io_time_ms 145 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 47 #