data_3OOK # _model_server_result.job_id TktRJOBYhBM8UldZnH7xdg _model_server_result.datetime_utc '2025-05-21 04:23:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ook # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1}' # _entry.id 3OOK # _exptl.entry_id 3OOK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 559.939 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-({(2S)-2-[2-(4-chlorophenyl)-5,6-difluoro-1H-benzimidazol-1-yl]-2-cyclohexylacetyl}amino)-3,5-difluorobenzoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3OOK _cell.length_a 72.477 _cell.length_b 83.288 _cell.length_c 190.007 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OOK _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G,H 1 1 C,D,F,I,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C28 H22 Cl F4 N3 O3' _chem_comp.formula_weight 559.939 _chem_comp.id OOK _chem_comp.mon_nstd_flag . _chem_comp.name '4-({(2S)-2-[2-(4-chlorophenyl)-5,6-difluoro-1H-benzimidazol-1-yl]-2-cyclohexylacetyl}amino)-3,5-difluorobenzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 OOK sing 237 n y N1 C4 OOK sing 238 n y N1 C9 OOK sing 239 n n C2 N3 OOK doub 240 n y C2 C17 OOK sing 241 n y N3 C5 OOK sing 242 n y C4 C5 OOK doub 243 n y C4 C10 OOK sing 244 n y C5 C14 OOK sing 245 n y C6 N7 OOK sing 246 n n C6 C9 OOK sing 247 n n C6 O21 OOK doub 248 n n N7 C8 OOK sing 249 n n C8 C11 OOK doub 250 n y C8 C12 OOK sing 251 n y C9 C23 OOK sing 252 n n C10 C16 OOK doub 253 n y C11 C20 OOK sing 254 n y C11 F27 OOK sing 255 n n C12 C19 OOK doub 256 n y C12 F26 OOK sing 257 n n C13 C15 OOK sing 258 n n C13 C19 OOK sing 259 n y C13 C20 OOK doub 260 n y C14 C18 OOK doub 261 n y C15 O22 OOK doub 262 n n C15 O30 OOK sing 263 n n C16 C18 OOK sing 264 n y C16 F28 OOK sing 265 n n C17 C24 OOK doub 266 n y C17 C25 OOK sing 267 n y C18 F29 OOK sing 268 n n C23 C35 OOK sing 269 n n C23 C36 OOK sing 270 n n C24 C33 OOK sing 271 n y C25 C32 OOK doub 272 n y C31 C32 OOK sing 273 n y C31 C33 OOK doub 274 n y C31 CL34 OOK sing 275 n n C35 C37 OOK sing 276 n n C36 C38 OOK sing 277 n n C37 C39 OOK sing 278 n n C38 C39 OOK sing 279 n n N7 HN7 OOK sing 280 n n C9 H9 OOK sing 281 n n C10 H10 OOK sing 282 n n C14 H14 OOK sing 283 n n C19 H19 OOK sing 284 n n C20 H20 OOK sing 285 n n C23 H23 OOK sing 286 n n C24 H24 OOK sing 287 n n C25 H25 OOK sing 288 n n C32 H32 OOK sing 289 n n C33 H33 OOK sing 290 n n C35 H35 OOK sing 291 n n C35 H35A OOK sing 292 n n C36 H36 OOK sing 293 n n C36 H36A OOK sing 294 n n C37 H37 OOK sing 295 n n C37 H37A OOK sing 296 n n C38 H38 OOK sing 297 n n C38 H38A OOK sing 298 n n C39 H39 OOK sing 299 n n C39 H39A OOK sing 300 n n O30 H30 OOK sing 301 n n # _atom_sites.entry_id 3OOK _atom_sites.fract_transf_matrix[1][1] 0.013797 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012007 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005263 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 OOK A 1 1 1 OOK UNL . F 3 OOK C 1 2 2 OOK UNL . G 4 HOH A 1 3 3 HOH HOH . G 4 HOH A 2 5 5 HOH HOH . G 4 HOH A 3 6 6 HOH HOH . G 4 HOH A 4 7 7 HOH HOH . G 4 HOH A 5 8 8 HOH HOH . G 4 HOH A 6 9 9 HOH HOH . G 4 HOH A 7 12 12 HOH HOH . G 4 HOH A 8 14 14 HOH HOH . G 4 HOH A 9 15 15 HOH HOH . G 4 HOH A 10 17 17 HOH HOH . G 4 HOH A 11 18 18 HOH HOH . G 4 HOH A 12 21 21 HOH HOH . G 4 HOH A 13 23 23 HOH HOH . G 4 HOH A 14 26 26 HOH HOH . G 4 HOH A 15 31 31 HOH HOH . G 4 HOH A 16 32 32 HOH HOH . G 4 HOH A 17 33 33 HOH HOH . G 4 HOH A 18 34 34 HOH HOH . G 4 HOH A 19 36 36 HOH HOH . G 4 HOH A 20 38 38 HOH HOH . G 4 HOH A 21 40 40 HOH HOH . G 4 HOH A 22 45 45 HOH HOH . G 4 HOH A 23 46 46 HOH HOH . G 4 HOH A 24 47 47 HOH HOH . G 4 HOH A 25 50 50 HOH HOH . G 4 HOH A 26 53 53 HOH HOH . G 4 HOH A 27 54 54 HOH HOH . G 4 HOH A 28 56 56 HOH HOH . G 4 HOH A 29 57 57 HOH HOH . G 4 HOH A 30 59 59 HOH HOH . G 4 HOH A 31 60 60 HOH HOH . G 4 HOH A 32 62 62 HOH HOH . G 4 HOH A 33 64 64 HOH HOH . G 4 HOH A 34 66 66 HOH HOH . G 4 HOH A 35 67 67 HOH HOH . G 4 HOH A 36 68 68 HOH HOH . G 4 HOH A 37 71 71 HOH HOH . G 4 HOH A 38 72 72 HOH HOH . G 4 HOH A 39 74 74 HOH HOH . G 4 HOH A 40 75 75 HOH HOH . G 4 HOH A 41 76 76 HOH HOH . G 4 HOH A 42 77 77 HOH HOH . G 4 HOH A 43 81 81 HOH HOH . G 4 HOH A 44 82 82 HOH HOH . G 4 HOH A 45 84 84 HOH HOH . G 4 HOH A 46 85 85 HOH HOH . G 4 HOH A 47 88 88 HOH HOH . G 4 HOH A 48 91 91 HOH HOH . G 4 HOH A 49 92 92 HOH HOH . G 4 HOH A 50 93 93 HOH HOH . G 4 HOH A 51 94 94 HOH HOH . G 4 HOH A 52 96 96 HOH HOH . G 4 HOH A 53 98 98 HOH HOH . G 4 HOH A 54 100 100 HOH HOH . G 4 HOH A 55 101 101 HOH HOH . G 4 HOH A 56 102 102 HOH HOH . G 4 HOH A 57 103 103 HOH HOH . G 4 HOH A 58 106 106 HOH HOH . G 4 HOH A 59 109 109 HOH HOH . G 4 HOH A 60 110 110 HOH HOH . G 4 HOH A 61 111 111 HOH HOH . G 4 HOH A 62 113 113 HOH HOH . G 4 HOH A 63 114 114 HOH HOH . G 4 HOH A 64 120 120 HOH HOH . G 4 HOH A 65 123 123 HOH HOH . G 4 HOH A 66 126 126 HOH HOH . G 4 HOH A 67 127 127 HOH HOH . G 4 HOH A 68 128 128 HOH HOH . G 4 HOH A 69 133 133 HOH HOH . G 4 HOH A 70 134 134 HOH HOH . G 4 HOH A 71 135 135 HOH HOH . G 4 HOH A 72 137 137 HOH HOH . G 4 HOH A 73 138 138 HOH HOH . G 4 HOH A 74 139 139 HOH HOH . G 4 HOH A 75 142 142 HOH HOH . G 4 HOH A 76 143 143 HOH HOH . G 4 HOH A 77 147 147 HOH HOH . G 4 HOH A 78 148 148 HOH HOH . G 4 HOH A 79 149 149 HOH HOH . G 4 HOH A 80 150 150 HOH HOH . G 4 HOH A 81 151 151 HOH HOH . G 4 HOH A 82 152 152 HOH HOH . G 4 HOH A 83 153 153 HOH HOH . G 4 HOH A 84 154 154 HOH HOH . G 4 HOH A 85 156 156 HOH HOH . G 4 HOH A 86 157 157 HOH HOH . G 4 HOH A 87 160 160 HOH HOH . G 4 HOH A 88 165 165 HOH HOH . G 4 HOH A 89 477 1 HOH HOH . H 4 HOH B 1 10 10 HOH HOH . H 4 HOH B 2 20 20 HOH HOH . H 4 HOH B 3 49 49 HOH HOH . H 4 HOH B 4 65 65 HOH HOH . H 4 HOH B 5 108 108 HOH HOH . H 4 HOH B 6 163 163 HOH HOH . I 4 HOH C 1 4 4 HOH HOH . I 4 HOH C 2 11 11 HOH HOH . I 4 HOH C 3 13 13 HOH HOH . I 4 HOH C 4 16 16 HOH HOH . I 4 HOH C 5 19 19 HOH HOH . I 4 HOH C 6 22 22 HOH HOH . I 4 HOH C 7 24 24 HOH HOH . I 4 HOH C 8 25 25 HOH HOH . I 4 HOH C 9 27 27 HOH HOH . I 4 HOH C 10 28 28 HOH HOH . I 4 HOH C 11 30 30 HOH HOH . I 4 HOH C 12 35 35 HOH HOH . I 4 HOH C 13 37 37 HOH HOH . I 4 HOH C 14 39 39 HOH HOH . I 4 HOH C 15 41 41 HOH HOH . I 4 HOH C 16 42 42 HOH HOH . I 4 HOH C 17 43 43 HOH HOH . I 4 HOH C 18 44 44 HOH HOH . I 4 HOH C 19 48 48 HOH HOH . I 4 HOH C 20 51 51 HOH HOH . I 4 HOH C 21 52 52 HOH HOH . I 4 HOH C 22 55 55 HOH HOH . I 4 HOH C 23 58 58 HOH HOH . I 4 HOH C 24 61 61 HOH HOH . I 4 HOH C 25 69 69 HOH HOH . I 4 HOH C 26 70 70 HOH HOH . I 4 HOH C 27 73 73 HOH HOH . I 4 HOH C 28 78 78 HOH HOH . I 4 HOH C 29 79 79 HOH HOH . I 4 HOH C 30 80 80 HOH HOH . I 4 HOH C 31 86 86 HOH HOH . I 4 HOH C 32 87 87 HOH HOH . I 4 HOH C 33 89 89 HOH HOH . I 4 HOH C 34 90 90 HOH HOH . I 4 HOH C 35 95 95 HOH HOH . I 4 HOH C 36 97 97 HOH HOH . I 4 HOH C 37 99 99 HOH HOH . I 4 HOH C 38 104 104 HOH HOH . I 4 HOH C 39 105 105 HOH HOH . I 4 HOH C 40 107 107 HOH HOH . I 4 HOH C 41 112 112 HOH HOH . I 4 HOH C 42 115 115 HOH HOH . I 4 HOH C 43 116 116 HOH HOH . I 4 HOH C 44 117 117 HOH HOH . I 4 HOH C 45 119 119 HOH HOH . I 4 HOH C 46 122 122 HOH HOH . I 4 HOH C 47 124 124 HOH HOH . I 4 HOH C 48 125 125 HOH HOH . I 4 HOH C 49 129 129 HOH HOH . I 4 HOH C 50 130 130 HOH HOH . I 4 HOH C 51 131 131 HOH HOH . I 4 HOH C 52 132 132 HOH HOH . I 4 HOH C 53 136 136 HOH HOH . I 4 HOH C 54 140 140 HOH HOH . I 4 HOH C 55 141 141 HOH HOH . I 4 HOH C 56 144 144 HOH HOH . I 4 HOH C 57 145 145 HOH HOH . I 4 HOH C 58 146 146 HOH HOH . I 4 HOH C 59 155 155 HOH HOH . I 4 HOH C 60 158 158 HOH HOH . I 4 HOH C 61 159 159 HOH HOH . I 4 HOH C 62 161 161 HOH HOH . I 4 HOH C 63 162 162 HOH HOH . I 4 HOH C 64 164 164 HOH HOH . I 4 HOH C 65 166 166 HOH HOH . I 4 HOH C 66 477 2 HOH HOH . J 4 HOH D 1 29 29 HOH HOH . J 4 HOH D 2 63 63 HOH HOH . J 4 HOH D 3 83 83 HOH HOH . J 4 HOH D 4 118 118 HOH HOH . J 4 HOH D 5 121 121 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 OOK . . . E 3 23.438 17.778 3.449 1 29.27 ? N1 OOK 1 A 1 HETATM 2 C C2 OOK . . . E 3 22.591 17.086 2.623 1 27.42 ? C2 OOK 1 A 1 HETATM 3 N N3 OOK . . . E 3 23.221 16.101 2.048 1 24.97 ? N3 OOK 1 A 1 HETATM 4 C C4 OOK . . . E 3 24.666 17.181 3.345 1 29 ? C4 OOK 1 A 1 HETATM 5 C C5 OOK . . . E 3 24.508 16.104 2.45 1 24.08 ? C5 OOK 1 A 1 HETATM 6 C C6 OOK . . . E 3 23.984 20.08 3.925 1 29.62 ? C6 OOK 1 A 1 HETATM 7 N N7 OOK . . . E 3 24.22 20.279 2.605 1 32.23 ? N7 OOK 1 A 1 HETATM 8 C C8 OOK . . . E 3 25.032 21.303 2.123 1 33.47 ? C8 OOK 1 A 1 HETATM 9 C C9 OOK . . . E 3 23.097 18.915 4.311 1 29.27 ? C9 OOK 1 A 1 HETATM 10 C C10 OOK . . . E 3 25.896 17.437 3.933 1 33.02 ? C10 OOK 1 A 1 HETATM 11 C C11 OOK . . . E 3 24.529 22.6 1.961 1 34.13 ? C11 OOK 1 A 1 HETATM 12 C C12 OOK . . . E 3 26.387 21.022 1.861 1 34.13 ? C12 OOK 1 A 1 HETATM 13 C C13 OOK . . . E 3 26.732 23.313 1.233 1 33.43 ? C13 OOK 1 A 1 HETATM 14 C C14 OOK . . . E 3 25.613 15.321 2.105 1 26.56 ? C14 OOK 1 A 1 HETATM 15 C C15 OOK . . . E 3 27.66 24.383 0.789 1 34.79 ? C15 OOK 1 A 1 HETATM 16 C C16 OOK . . . E 3 26.964 16.633 3.625 1 33.96 ? C16 OOK 1 A 1 HETATM 17 C C17 OOK . . . E 3 21.156 17.388 2.465 1 30.3 ? C17 OOK 1 A 1 HETATM 18 C C18 OOK . . . E 3 26.821 15.601 2.695 1 31.61 ? C18 OOK 1 A 1 HETATM 19 C C19 OOK . . . E 3 27.222 22.019 1.408 1 30.48 ? C19 OOK 1 A 1 HETATM 20 C C20 OOK . . . E 3 25.379 23.603 1.52 1 33.3 ? C20 OOK 1 A 1 HETATM 21 O O21 OOK . . . E 3 24.448 20.822 4.758 1 29.86 ? O21 OOK 1 A 1 HETATM 22 O O22 OOK . . . E 3 28.804 24.143 0.456 1 37.46 ? O22 OOK 1 A 1 HETATM 23 C C23 OOK . . . E 3 23.171 18.473 5.791 1 28.61 ? C23 OOK 1 A 1 HETATM 24 C C24 OOK . . . E 3 20.786 18.644 1.985 1 31.49 ? C24 OOK 1 A 1 HETATM 25 C C25 OOK . . . E 3 20.193 16.47 2.904 1 30.59 ? C25 OOK 1 A 1 HETATM 26 F F26 OOK . . . E 3 26.903 19.793 2.07 1 36.22 ? F26 OOK 1 A 1 HETATM 27 F F27 OOK . . . E 3 23.229 22.874 2.228 1 35.85 ? F27 OOK 1 A 1 HETATM 28 F F28 OOK . . . E 3 28.159 16.871 4.196 1 37.32 ? F28 OOK 1 A 1 HETATM 29 F F29 OOK . . . E 3 27.862 14.794 2.467 1 33.77 ? F29 OOK 1 A 1 HETATM 30 O O30 OOK . . . E 3 27.247 25.651 0.802 1 31.69 ? O30 OOK 1 A 1 HETATM 31 C C31 OOK . . . E 3 18.494 18.024 2.236 1 35.18 ? C31 OOK 1 A 1 HETATM 32 C C32 OOK . . . E 3 18.856 16.785 2.754 1 32.38 ? C32 OOK 1 A 1 HETATM 33 C C33 OOK . . . E 3 19.459 18.939 1.848 1 31.9 ? C33 OOK 1 A 1 HETATM 34 CL CL34 OOK . . . E 3 16.829 18.471 2.07 1 39.25 ? CL34 OOK 1 A 1 HETATM 35 C C35 OOK . . . E 3 22.462 19.506 6.68 1 27.63 ? C35 OOK 1 A 1 HETATM 36 C C36 OOK . . . E 3 22.51 17.084 5.965 1 29.54 ? C36 OOK 1 A 1 HETATM 37 C C37 OOK . . . E 3 22.429 19.051 8.147 1 32.53 ? C37 OOK 1 A 1 HETATM 38 C C38 OOK . . . E 3 22.579 16.615 7.431 1 29.46 ? C38 OOK 1 A 1 HETATM 39 C C39 OOK . . . E 3 21.813 17.635 8.292 1 31.14 ? C39 OOK 1 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 235 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 39 #