data_3OOM # _model_server_result.job_id eWvfwntjjbBEqJjhRp8Kyw _model_server_result.datetime_utc '2024-12-22 12:08:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3oom # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":4}' # _entry.id 3OOM # _exptl.entry_id 3OOM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 15 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3OOM _cell.length_a 58.4 _cell.length_b 88.03 _cell.length_c 138.97 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OOM _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 69.485 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N ? 4 M N N ? 4 N N N ? 4 O N N ? 4 P N N ? 4 Q N N ? 4 R N N ? 4 S N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 131 n n C1 C2 EDO sing 132 n n C1 H11 EDO sing 133 n n C1 H12 EDO sing 134 n n O1 HO1 EDO sing 135 n n C2 O2 EDO sing 136 n n C2 H21 EDO sing 137 n n C2 H22 EDO sing 138 n n O2 HO2 EDO sing 139 n n # _atom_sites.entry_id 3OOM _atom_sites.fract_transf_matrix[1][1] 0.017123 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01136 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007196 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 1 1 PO4 PO4 . C 2 PO4 A 1 2 2 PO4 PO4 . D 3 507 A 1 500 1 507 DRG . E 4 EDO A 1 501 1 EDO EDO . F 4 EDO A 1 502 2 EDO EDO . G 4 EDO A 1 3 3 EDO EDO . H 4 EDO A 1 4 4 EDO EDO . I 4 EDO A 1 5 5 EDO EDO . J 4 EDO A 1 6 6 EDO EDO . K 4 EDO A 1 7 7 EDO EDO . L 4 EDO A 1 8 8 EDO EDO . M 4 EDO A 1 9 9 EDO EDO . N 4 EDO A 1 10 10 EDO EDO . O 4 EDO A 1 11 11 EDO EDO . P 4 EDO A 1 12 12 EDO EDO . Q 4 EDO A 1 13 13 EDO EDO . R 4 EDO A 1 14 14 EDO EDO . S 4 EDO A 1 15 15 EDO EDO . T 5 HOH A 1 16 16 HOH HOH . T 5 HOH A 2 17 17 HOH HOH . T 5 HOH A 3 18 18 HOH HOH . T 5 HOH A 4 19 19 HOH HOH . T 5 HOH A 5 20 20 HOH HOH . T 5 HOH A 6 21 21 HOH HOH . T 5 HOH A 7 22 22 HOH HOH . T 5 HOH A 8 23 23 HOH HOH . T 5 HOH A 9 24 24 HOH HOH . T 5 HOH A 10 25 25 HOH HOH . T 5 HOH A 11 26 26 HOH HOH . T 5 HOH A 12 27 27 HOH HOH . T 5 HOH A 13 28 28 HOH HOH . T 5 HOH A 14 29 29 HOH HOH . T 5 HOH A 15 30 30 HOH HOH . T 5 HOH A 16 31 31 HOH HOH . T 5 HOH A 17 32 32 HOH HOH . T 5 HOH A 18 33 33 HOH HOH . T 5 HOH A 19 34 34 HOH HOH . T 5 HOH A 20 35 35 HOH HOH . T 5 HOH A 21 36 36 HOH HOH . T 5 HOH A 22 37 37 HOH HOH . T 5 HOH A 23 38 38 HOH HOH . T 5 HOH A 24 39 39 HOH HOH . T 5 HOH A 25 40 40 HOH HOH . T 5 HOH A 26 41 41 HOH HOH . T 5 HOH A 27 42 42 HOH HOH . T 5 HOH A 28 43 43 HOH HOH . T 5 HOH A 29 44 44 HOH HOH . T 5 HOH A 30 45 45 HOH HOH . T 5 HOH A 31 46 46 HOH HOH . T 5 HOH A 32 47 47 HOH HOH . T 5 HOH A 33 48 48 HOH HOH . T 5 HOH A 34 49 49 HOH HOH . T 5 HOH A 35 50 50 HOH HOH . T 5 HOH A 36 51 51 HOH HOH . T 5 HOH A 37 52 52 HOH HOH . T 5 HOH A 38 53 53 HOH HOH . T 5 HOH A 39 54 54 HOH HOH . T 5 HOH A 40 55 55 HOH HOH . T 5 HOH A 41 56 56 HOH HOH . T 5 HOH A 42 57 57 HOH HOH . T 5 HOH A 43 58 58 HOH HOH . T 5 HOH A 44 59 59 HOH HOH . T 5 HOH A 45 60 60 HOH HOH . T 5 HOH A 46 61 61 HOH HOH . T 5 HOH A 47 62 62 HOH HOH . T 5 HOH A 48 63 63 HOH HOH . T 5 HOH A 49 64 64 HOH HOH . T 5 HOH A 50 65 65 HOH HOH . T 5 HOH A 51 66 66 HOH HOH . T 5 HOH A 52 67 67 HOH HOH . T 5 HOH A 53 68 68 HOH HOH . T 5 HOH A 54 69 69 HOH HOH . T 5 HOH A 55 70 70 HOH HOH . T 5 HOH A 56 71 71 HOH HOH . T 5 HOH A 57 72 72 HOH HOH . T 5 HOH A 58 73 73 HOH HOH . T 5 HOH A 59 74 74 HOH HOH . T 5 HOH A 60 75 75 HOH HOH . T 5 HOH A 61 76 76 HOH HOH . T 5 HOH A 62 77 77 HOH HOH . T 5 HOH A 63 78 78 HOH HOH . T 5 HOH A 64 79 79 HOH HOH . T 5 HOH A 65 80 80 HOH HOH . T 5 HOH A 66 81 81 HOH HOH . T 5 HOH A 67 82 82 HOH HOH . T 5 HOH A 68 83 83 HOH HOH . T 5 HOH A 69 84 84 HOH HOH . T 5 HOH A 70 85 85 HOH HOH . T 5 HOH A 71 86 86 HOH HOH . T 5 HOH A 72 87 87 HOH HOH . T 5 HOH A 73 88 88 HOH HOH . T 5 HOH A 74 89 89 HOH HOH . T 5 HOH A 75 90 90 HOH HOH . T 5 HOH A 76 92 92 HOH HOH . T 5 HOH A 77 93 93 HOH HOH . T 5 HOH A 78 95 95 HOH HOH . T 5 HOH A 79 96 96 HOH HOH . T 5 HOH A 80 98 98 HOH HOH . T 5 HOH A 81 99 99 HOH HOH . T 5 HOH A 82 100 100 HOH HOH . T 5 HOH A 83 102 102 HOH HOH . T 5 HOH A 84 103 103 HOH HOH . T 5 HOH A 85 104 104 HOH HOH . T 5 HOH A 86 105 105 HOH HOH . T 5 HOH A 87 106 106 HOH HOH . T 5 HOH A 88 107 107 HOH HOH . T 5 HOH A 89 108 108 HOH HOH . T 5 HOH A 90 109 109 HOH HOH . T 5 HOH A 91 110 110 HOH HOH . T 5 HOH A 92 111 111 HOH HOH . T 5 HOH A 93 112 112 HOH HOH . T 5 HOH A 94 113 113 HOH HOH . T 5 HOH A 95 114 114 HOH HOH . T 5 HOH A 96 115 115 HOH HOH . T 5 HOH A 97 116 116 HOH HOH . T 5 HOH A 98 117 117 HOH HOH . T 5 HOH A 99 118 118 HOH HOH . T 5 HOH A 100 121 121 HOH HOH . T 5 HOH A 101 123 123 HOH HOH . T 5 HOH A 102 125 125 HOH HOH . T 5 HOH A 103 127 127 HOH HOH . T 5 HOH A 104 128 128 HOH HOH . T 5 HOH A 105 129 129 HOH HOH . T 5 HOH A 106 130 130 HOH HOH . T 5 HOH A 107 131 131 HOH HOH . T 5 HOH A 108 132 132 HOH HOH . T 5 HOH A 109 133 133 HOH HOH . T 5 HOH A 110 134 134 HOH HOH . T 5 HOH A 111 135 135 HOH HOH . T 5 HOH A 112 136 136 HOH HOH . T 5 HOH A 113 138 138 HOH HOH . T 5 HOH A 114 140 140 HOH HOH . T 5 HOH A 115 141 141 HOH HOH . T 5 HOH A 116 142 142 HOH HOH . T 5 HOH A 117 143 143 HOH HOH . T 5 HOH A 118 144 144 HOH HOH . T 5 HOH A 119 145 145 HOH HOH . T 5 HOH A 120 146 146 HOH HOH . T 5 HOH A 121 149 149 HOH HOH . T 5 HOH A 122 150 150 HOH HOH . T 5 HOH A 123 151 151 HOH HOH . T 5 HOH A 124 152 152 HOH HOH . T 5 HOH A 125 153 153 HOH HOH . T 5 HOH A 126 154 154 HOH HOH . T 5 HOH A 127 155 155 HOH HOH . T 5 HOH A 128 156 156 HOH HOH . T 5 HOH A 129 157 157 HOH HOH . T 5 HOH A 130 158 158 HOH HOH . T 5 HOH A 131 159 159 HOH HOH . T 5 HOH A 132 161 161 HOH HOH . T 5 HOH A 133 162 162 HOH HOH . T 5 HOH A 134 163 163 HOH HOH . T 5 HOH A 135 164 164 HOH HOH . T 5 HOH A 136 166 166 HOH HOH . T 5 HOH A 137 169 169 HOH HOH . T 5 HOH A 138 170 170 HOH HOH . T 5 HOH A 139 172 172 HOH HOH . T 5 HOH A 140 175 175 HOH HOH . T 5 HOH A 141 176 176 HOH HOH . T 5 HOH A 142 177 177 HOH HOH . T 5 HOH A 143 178 178 HOH HOH . T 5 HOH A 144 180 180 HOH HOH . T 5 HOH A 145 182 182 HOH HOH . T 5 HOH A 146 183 183 HOH HOH . T 5 HOH A 147 184 184 HOH HOH . T 5 HOH A 148 185 185 HOH HOH . T 5 HOH A 149 188 188 HOH HOH . T 5 HOH A 150 190 190 HOH HOH . T 5 HOH A 151 191 191 HOH HOH . T 5 HOH A 152 195 195 HOH HOH . T 5 HOH A 153 197 197 HOH HOH . T 5 HOH A 154 198 198 HOH HOH . T 5 HOH A 155 503 1 HOH HOH . T 5 HOH A 156 504 2 HOH HOH . T 5 HOH A 157 505 3 HOH HOH . T 5 HOH A 158 506 5 HOH HOH . T 5 HOH A 159 507 6 HOH HOH . T 5 HOH A 160 508 7 HOH HOH . T 5 HOH A 161 509 8 HOH HOH . T 5 HOH A 162 510 9 HOH HOH . T 5 HOH A 163 511 10 HOH HOH . T 5 HOH A 164 512 11 HOH HOH . T 5 HOH A 165 513 12 HOH HOH . T 5 HOH A 166 514 13 HOH HOH . T 5 HOH A 167 515 14 HOH HOH . T 5 HOH A 168 516 15 HOH HOH . T 5 HOH A 169 517 201 HOH HOH . T 5 HOH A 170 518 202 HOH HOH . T 5 HOH A 171 519 203 HOH HOH . T 5 HOH A 172 520 205 HOH HOH . T 5 HOH A 173 521 207 HOH HOH . T 5 HOH A 174 522 210 HOH HOH . T 5 HOH A 175 523 211 HOH HOH . T 5 HOH A 176 524 212 HOH HOH . T 5 HOH A 177 525 213 HOH HOH . T 5 HOH A 178 526 214 HOH HOH . T 5 HOH A 179 527 215 HOH HOH . T 5 HOH A 180 528 216 HOH HOH . T 5 HOH A 181 529 217 HOH HOH . T 5 HOH A 182 530 218 HOH HOH . T 5 HOH A 183 531 220 HOH HOH . T 5 HOH A 184 532 221 HOH HOH . T 5 HOH A 185 533 222 HOH HOH . T 5 HOH A 186 534 226 HOH HOH . T 5 HOH A 187 535 229 HOH HOH . T 5 HOH A 188 536 233 HOH HOH . T 5 HOH A 189 537 234 HOH HOH . T 5 HOH A 190 538 237 HOH HOH . T 5 HOH A 191 539 238 HOH HOH . T 5 HOH A 192 540 239 HOH HOH . T 5 HOH A 193 541 240 HOH HOH . T 5 HOH A 194 542 241 HOH HOH . T 5 HOH A 195 543 242 HOH HOH . T 5 HOH A 196 544 243 HOH HOH . T 5 HOH A 197 545 244 HOH HOH . T 5 HOH A 198 546 245 HOH HOH . T 5 HOH A 199 547 246 HOH HOH . T 5 HOH A 200 548 247 HOH HOH . T 5 HOH A 201 549 248 HOH HOH . T 5 HOH A 202 550 249 HOH HOH . T 5 HOH A 203 551 250 HOH HOH . T 5 HOH A 204 552 251 HOH HOH . T 5 HOH A 205 553 252 HOH HOH . T 5 HOH A 206 554 253 HOH HOH . T 5 HOH A 207 555 254 HOH HOH . T 5 HOH A 208 556 255 HOH HOH . T 5 HOH A 209 557 256 HOH HOH . T 5 HOH A 210 558 257 HOH HOH . T 5 HOH A 211 559 259 HOH HOH . T 5 HOH A 212 560 260 HOH HOH . T 5 HOH A 213 561 261 HOH HOH . T 5 HOH A 214 562 262 HOH HOH . T 5 HOH A 215 563 263 HOH HOH . T 5 HOH A 216 564 264 HOH HOH . T 5 HOH A 217 565 265 HOH HOH . T 5 HOH A 218 566 266 HOH HOH . T 5 HOH A 219 567 267 HOH HOH . T 5 HOH A 220 568 268 HOH HOH . T 5 HOH A 221 569 269 HOH HOH . T 5 HOH A 222 570 303 HOH HOH . T 5 HOH A 223 571 304 HOH HOH . T 5 HOH A 224 572 305 HOH HOH . T 5 HOH A 225 573 306 HOH HOH . T 5 HOH A 226 574 307 HOH HOH . T 5 HOH A 227 575 308 HOH HOH . T 5 HOH A 228 576 309 HOH HOH . T 5 HOH A 229 577 310 HOH HOH . T 5 HOH A 230 578 311 HOH HOH . T 5 HOH A 231 579 312 HOH HOH . T 5 HOH A 232 580 313 HOH HOH . T 5 HOH A 233 581 314 HOH HOH . T 5 HOH A 234 582 315 HOH HOH . T 5 HOH A 235 583 316 HOH HOH . T 5 HOH A 236 584 317 HOH HOH . T 5 HOH A 237 585 318 HOH HOH . T 5 HOH A 238 586 319 HOH HOH . T 5 HOH A 239 587 320 HOH HOH . T 5 HOH A 240 588 322 HOH HOH . T 5 HOH A 241 589 324 HOH HOH . T 5 HOH A 242 590 325 HOH HOH . T 5 HOH A 243 591 326 HOH HOH . T 5 HOH A 244 592 327 HOH HOH . T 5 HOH A 245 593 329 HOH HOH . T 5 HOH A 246 594 330 HOH HOH . T 5 HOH A 247 595 332 HOH HOH . T 5 HOH A 248 596 333 HOH HOH . T 5 HOH A 249 597 334 HOH HOH . T 5 HOH A 250 598 335 HOH HOH . T 5 HOH A 251 599 336 HOH HOH . T 5 HOH A 252 600 337 HOH HOH . T 5 HOH A 253 601 338 HOH HOH . T 5 HOH A 254 602 339 HOH HOH . T 5 HOH A 255 603 340 HOH HOH . T 5 HOH A 256 604 342 HOH HOH . T 5 HOH A 257 605 343 HOH HOH . T 5 HOH A 258 606 344 HOH HOH . T 5 HOH A 259 607 345 HOH HOH . T 5 HOH A 260 608 346 HOH HOH . T 5 HOH A 261 609 347 HOH HOH . T 5 HOH A 262 610 354 HOH HOH . T 5 HOH A 263 611 355 HOH HOH . T 5 HOH A 264 612 356 HOH HOH . T 5 HOH A 265 613 357 HOH HOH . T 5 HOH A 266 614 358 HOH HOH . T 5 HOH A 267 615 359 HOH HOH . T 5 HOH A 268 616 360 HOH HOH . T 5 HOH A 269 617 361 HOH HOH . T 5 HOH A 270 618 362 HOH HOH . T 5 HOH A 271 619 363 HOH HOH . T 5 HOH A 272 620 364 HOH HOH . T 5 HOH A 273 621 365 HOH HOH . T 5 HOH A 274 622 366 HOH HOH . T 5 HOH A 275 623 367 HOH HOH . T 5 HOH A 276 624 368 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . H 4 10.505 8.76 2.706 1 38.09 ? C1 EDO 4 A 1 HETATM 2 O O1 EDO . . . H 4 11.051 7.841 1.756 1 37.37 ? O1 EDO 4 A 1 HETATM 3 C C2 EDO . . . H 4 10.249 8.075 4.033 1 33.38 ? C2 EDO 4 A 1 HETATM 4 O O2 EDO . . . H 4 11.353 7.269 4.51 1 18.89 ? O2 EDO 4 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 228 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 4 #