data_3OOT # _model_server_result.job_id 53GiYRJvAVdhD0fFfujeEQ _model_server_result.datetime_utc '2025-03-04 21:43:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3oot # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":327}' # _entry.id 3OOT # _exptl.entry_id 3OOT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 457.539 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(3-fluoro-2-methylbenzyl)-4-methyl-1-phenyl-3-(piperazin-1-ylcarbonyl)-1H-indol-5-ol _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3OOT _cell.length_a 143.554 _cell.length_b 143.554 _cell.length_c 143.554 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OOT _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 51 A CYS 45 1_555 A SG CYS 58 A CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf2 A SG CYS 217 A CYS 206 1_555 A SG CYS 221 A CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf3 A SG CYS 259 A CYS 249 1_555 A SG CYS 296 A CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf4 B SG CYS 51 B CYS 45 1_555 B SG CYS 58 B CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf5 B SG CYS 217 B CYS 206 1_555 B SG CYS 221 B CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf6 B SG CYS 259 B CYS 249 1_555 B SG CYS 296 B CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A ND2 ASN 75 A ASN 67 1_555 C C1 NAG . A NAG 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? covale ? covale2 B ND2 ASN 75 B ASN 67 1_555 E C1 NAG . B NAG 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.474 ? # _chem_comp.formula 'C28 H28 F N3 O2' _chem_comp.formula_weight 457.539 _chem_comp.id SSR _chem_comp.mon_nstd_flag . _chem_comp.name 2-(3-fluoro-2-methylbenzyl)-4-methyl-1-phenyl-3-(piperazin-1-ylcarbonyl)-1H-indol-5-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '[2-(3-Fluoro-2-methyl-benzyl)-5-hydroxy-4-methyl-1-phenyl-1H-indol-3-yl]-piperazin-1-yl-methanone' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 SSR doub 320 n y C1 C6 SSR sing 321 n y C2 C3 SSR sing 322 n y C3 C4 SSR doub 323 n y C3 N9 SSR sing 324 n y C4 C5 SSR sing 325 n y C4 C11 SSR sing 326 n y C5 C6 SSR doub 327 n y C5 C12 SSR sing 328 n n C6 O16 SSR sing 329 n n N9 C10 SSR sing 330 n y N9 C35 SSR sing 331 n y C10 C11 SSR doub 332 n y C10 C46 SSR sing 333 n n C11 C17 SSR sing 334 n n C17 N18 SSR sing 335 n n C17 O32 SSR doub 336 n n N18 C19 SSR sing 337 n n N18 C23 SSR sing 338 n n C19 C20 SSR sing 339 n n C20 N21 SSR sing 340 n n N21 C22 SSR sing 341 n n C22 C23 SSR sing 342 n n C35 C36 SSR doub 343 n y C35 C40 SSR sing 344 n y C36 C37 SSR sing 345 n y C37 C38 SSR doub 346 n y C38 C39 SSR sing 347 n y C39 C40 SSR doub 348 n y C46 C47 SSR sing 349 n n C47 C50 SSR doub 350 n y C47 C54 SSR sing 351 n y C50 C51 SSR sing 352 n y C50 C58 SSR sing 353 n n C51 C52 SSR doub 354 n y C51 F62 SSR sing 355 n n C52 C53 SSR sing 356 n y C53 C54 SSR doub 357 n y C1 H1 SSR sing 358 n n C2 H2 SSR sing 359 n n C12 H12 SSR sing 360 n n C12 H12A SSR sing 361 n n C12 H12B SSR sing 362 n n O16 HO16 SSR sing 363 n n C19 H19 SSR sing 364 n n C19 H19A SSR sing 365 n n C20 H20 SSR sing 366 n n C20 H20A SSR sing 367 n n N21 HN21 SSR sing 368 n n C22 H22 SSR sing 369 n n C22 H22A SSR sing 370 n n C23 H23 SSR sing 371 n n C23 H23A SSR sing 372 n n C36 H36 SSR sing 373 n n C37 H37 SSR sing 374 n n C38 H38 SSR sing 375 n n C39 H39 SSR sing 376 n n C40 H40 SSR sing 377 n n C46 H46 SSR sing 378 n n C46 H46A SSR sing 379 n n C52 H52 SSR sing 380 n n C53 H53 SSR sing 381 n n C54 H54 SSR sing 382 n n C58 H58 SSR sing 383 n n C58 H58A SSR sing 384 n n C58 H58B SSR sing 385 n n # _atom_sites.entry_id 3OOT _atom_sites.fract_transf_matrix[1][1] 0.006966 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006966 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006966 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG A 1 367 367 NAG NAG . D 3 SSR A 1 327 1 SSR SSR . E 2 NAG B 1 367 367 NAG NAG . F 3 SSR B 1 327 1 SSR SSR . G 4 HOH A 1 98 98 HOH HOH . G 4 HOH A 2 328 3 HOH HOH . G 4 HOH A 3 329 5 HOH HOH . G 4 HOH A 4 330 6 HOH HOH . G 4 HOH A 5 331 8 HOH HOH . G 4 HOH A 6 332 10 HOH HOH . G 4 HOH A 7 333 11 HOH HOH . G 4 HOH A 8 334 13 HOH HOH . G 4 HOH A 9 335 16 HOH HOH . G 4 HOH A 10 336 17 HOH HOH . G 4 HOH A 11 337 18 HOH HOH . G 4 HOH A 12 338 19 HOH HOH . G 4 HOH A 13 339 21 HOH HOH . G 4 HOH A 14 340 23 HOH HOH . G 4 HOH A 15 341 25 HOH HOH . G 4 HOH A 16 342 26 HOH HOH . G 4 HOH A 17 343 27 HOH HOH . G 4 HOH A 18 344 28 HOH HOH . G 4 HOH A 19 345 29 HOH HOH . G 4 HOH A 20 346 30 HOH HOH . G 4 HOH A 21 347 33 HOH HOH . G 4 HOH A 22 348 34 HOH HOH . G 4 HOH A 23 349 35 HOH HOH . G 4 HOH A 24 350 36 HOH HOH . G 4 HOH A 25 351 37 HOH HOH . G 4 HOH A 26 352 38 HOH HOH . G 4 HOH A 27 353 40 HOH HOH . G 4 HOH A 28 354 41 HOH HOH . G 4 HOH A 29 355 42 HOH HOH . G 4 HOH A 30 356 44 HOH HOH . G 4 HOH A 31 357 49 HOH HOH . G 4 HOH A 32 358 51 HOH HOH . G 4 HOH A 33 359 52 HOH HOH . G 4 HOH A 34 360 54 HOH HOH . G 4 HOH A 35 361 58 HOH HOH . G 4 HOH A 36 362 63 HOH HOH . G 4 HOH A 37 363 67 HOH HOH . G 4 HOH A 38 364 71 HOH HOH . G 4 HOH A 39 365 79 HOH HOH . G 4 HOH A 40 366 80 HOH HOH . G 4 HOH A 41 368 82 HOH HOH . G 4 HOH A 42 369 84 HOH HOH . G 4 HOH A 43 370 90 HOH HOH . G 4 HOH A 44 371 95 HOH HOH . G 4 HOH A 45 372 102 HOH HOH . G 4 HOH A 46 373 103 HOH HOH . G 4 HOH A 47 374 105 HOH HOH . G 4 HOH A 48 375 110 HOH HOH . G 4 HOH A 49 376 112 HOH HOH . G 4 HOH A 50 377 113 HOH HOH . G 4 HOH A 51 378 114 HOH HOH . G 4 HOH A 52 379 116 HOH HOH . G 4 HOH A 53 380 119 HOH HOH . G 4 HOH A 54 381 121 HOH HOH . G 4 HOH A 55 382 123 HOH HOH . G 4 HOH A 56 383 125 HOH HOH . G 4 HOH A 57 384 127 HOH HOH . G 4 HOH A 58 385 133 HOH HOH . G 4 HOH A 59 386 137 HOH HOH . G 4 HOH A 60 387 142 HOH HOH . G 4 HOH A 61 388 150 HOH HOH . G 4 HOH A 62 389 152 HOH HOH . G 4 HOH A 63 390 155 HOH HOH . H 4 HOH B 1 328 2 HOH HOH . H 4 HOH B 2 329 4 HOH HOH . H 4 HOH B 3 330 7 HOH HOH . H 4 HOH B 4 331 9 HOH HOH . H 4 HOH B 5 332 12 HOH HOH . H 4 HOH B 6 333 14 HOH HOH . H 4 HOH B 7 334 15 HOH HOH . H 4 HOH B 8 335 20 HOH HOH . H 4 HOH B 9 336 24 HOH HOH . H 4 HOH B 10 337 31 HOH HOH . H 4 HOH B 11 338 39 HOH HOH . H 4 HOH B 12 339 45 HOH HOH . H 4 HOH B 13 340 46 HOH HOH . H 4 HOH B 14 341 47 HOH HOH . H 4 HOH B 15 342 48 HOH HOH . H 4 HOH B 16 343 50 HOH HOH . H 4 HOH B 17 344 53 HOH HOH . H 4 HOH B 18 345 55 HOH HOH . H 4 HOH B 19 346 56 HOH HOH . H 4 HOH B 20 347 59 HOH HOH . H 4 HOH B 21 348 62 HOH HOH . H 4 HOH B 22 349 64 HOH HOH . H 4 HOH B 23 350 65 HOH HOH . H 4 HOH B 24 351 66 HOH HOH . H 4 HOH B 25 352 68 HOH HOH . H 4 HOH B 26 353 69 HOH HOH . H 4 HOH B 27 354 73 HOH HOH . H 4 HOH B 28 355 74 HOH HOH . H 4 HOH B 29 356 75 HOH HOH . H 4 HOH B 30 357 77 HOH HOH . H 4 HOH B 31 358 83 HOH HOH . H 4 HOH B 32 359 87 HOH HOH . H 4 HOH B 33 360 88 HOH HOH . H 4 HOH B 34 361 89 HOH HOH . H 4 HOH B 35 362 92 HOH HOH . H 4 HOH B 36 363 93 HOH HOH . H 4 HOH B 37 364 97 HOH HOH . H 4 HOH B 38 365 99 HOH HOH . H 4 HOH B 39 366 101 HOH HOH . H 4 HOH B 40 368 104 HOH HOH . H 4 HOH B 41 369 106 HOH HOH . H 4 HOH B 42 370 107 HOH HOH . H 4 HOH B 43 371 108 HOH HOH . H 4 HOH B 44 372 111 HOH HOH . H 4 HOH B 45 373 115 HOH HOH . H 4 HOH B 46 374 118 HOH HOH . H 4 HOH B 47 375 128 HOH HOH . H 4 HOH B 48 376 129 HOH HOH . H 4 HOH B 49 377 130 HOH HOH . H 4 HOH B 50 378 134 HOH HOH . H 4 HOH B 51 379 135 HOH HOH . H 4 HOH B 52 380 136 HOH HOH . H 4 HOH B 53 381 147 HOH HOH . H 4 HOH B 54 382 148 HOH HOH . H 4 HOH B 55 383 149 HOH HOH . H 4 HOH B 56 384 154 HOH HOH . H 4 HOH B 57 385 158 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 SSR . . . F 3 -36.728 -52.508 -22.014 1 42.19 ? C1 SSR 327 B 1 HETATM 2 C C2 SSR . . . F 3 -35.337 -52.495 -21.908 1 41.26 ? C2 SSR 327 B 1 HETATM 3 C C3 SSR . . . F 3 -34.656 -53.651 -21.494 1 43.87 ? C3 SSR 327 B 1 HETATM 4 C C4 SSR . . . F 3 -35.378 -54.833 -21.221 1 43.97 ? C4 SSR 327 B 1 HETATM 5 C C5 SSR . . . F 3 -36.788 -54.838 -21.319 1 44.17 ? C5 SSR 327 B 1 HETATM 6 C C6 SSR . . . F 3 -37.447 -53.673 -21.713 1 46.16 ? C6 SSR 327 B 1 HETATM 7 N N9 SSR . . . F 3 -33.341 -53.967 -21.402 1 44.87 ? N9 SSR 327 B 1 HETATM 8 C C10 SSR . . . F 3 -33.051 -55.209 -20.942 1 43.49 ? C10 SSR 327 B 1 HETATM 9 C C11 SSR . . . F 3 -34.309 -55.816 -20.839 1 44.59 ? C11 SSR 327 B 1 HETATM 10 C C12 SSR . . . F 3 -37.629 -56.076 -21.098 1 42.92 ? C12 SSR 327 B 1 HETATM 11 O O16 SSR . . . F 3 -38.814 -53.664 -21.792 1 51.35 ? O16 SSR 327 B 1 HETATM 12 C C17 SSR . . . F 3 -34.639 -57.227 -20.398 1 45.79 ? C17 SSR 327 B 1 HETATM 13 N N18 SSR . . . F 3 -35.239 -57.495 -19.219 1 44.77 ? N18 SSR 327 B 1 HETATM 14 C C19 SSR . . . F 3 -35.705 -56.444 -18.293 1 42.9 ? C19 SSR 327 B 1 HETATM 15 C C20 SSR . . . F 3 -35.131 -56.715 -16.917 1 41.79 ? C20 SSR 327 B 1 HETATM 16 N N21 SSR . . . F 3 -35.524 -58.051 -16.508 1 45.36 ? N21 SSR 327 B 1 HETATM 17 C C22 SSR . . . F 3 -35.22 -59.181 -17.38 1 46.8 ? C22 SSR 327 B 1 HETATM 18 C C23 SSR . . . F 3 -35.536 -58.898 -18.857 1 46.97 ? C23 SSR 327 B 1 HETATM 19 O O32 SSR . . . F 3 -34.286 -58.152 -21.114 1 47.87 ? O32 SSR 327 B 1 HETATM 20 C C35 SSR . . . F 3 -32.365 -53.036 -21.537 1 46.87 ? C35 SSR 327 B 1 HETATM 21 C C36 SSR . . . F 3 -31.344 -53.143 -22.518 1 46.8 ? C36 SSR 327 B 1 HETATM 22 C C37 SSR . . . F 3 -30.28 -52.243 -22.645 1 46.29 ? C37 SSR 327 B 1 HETATM 23 C C38 SSR . . . F 3 -30.219 -51.142 -21.786 1 48.38 ? C38 SSR 327 B 1 HETATM 24 C C39 SSR . . . F 3 -31.217 -50.977 -20.822 1 48.85 ? C39 SSR 327 B 1 HETATM 25 C C40 SSR . . . F 3 -32.253 -51.912 -20.697 1 48.31 ? C40 SSR 327 B 1 HETATM 26 C C46 SSR . . . F 3 -31.664 -55.816 -20.704 1 40.43 ? C46 SSR 327 B 1 HETATM 27 C C47 SSR . . . F 3 -31.559 -56.584 -19.405 1 36.44 ? C47 SSR 327 B 1 HETATM 28 C C50 SSR . . . F 3 -31.595 -55.936 -18.165 1 35.2 ? C50 SSR 327 B 1 HETATM 29 C C51 SSR . . . F 3 -31.518 -56.696 -17.006 1 37.12 ? C51 SSR 327 B 1 HETATM 30 C C52 SSR . . . F 3 -31.428 -58.095 -17.077 1 37.61 ? C52 SSR 327 B 1 HETATM 31 C C53 SSR . . . F 3 -31.377 -58.754 -18.315 1 35.31 ? C53 SSR 327 B 1 HETATM 32 C C54 SSR . . . F 3 -31.441 -57.979 -19.475 1 34.69 ? C54 SSR 327 B 1 HETATM 33 C C58 SSR . . . F 3 -31.667 -54.429 -18.039 1 34.29 ? C58 SSR 327 B 1 HETATM 34 F F62 SSR . . . F 3 -31.554 -56.077 -15.809 1 42.12 ? F62 SSR 327 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 34 #