data_3OOZ # _model_server_result.job_id jJGF3TzP0qdlOI_4AQt9WA _model_server_result.datetime_utc '2024-11-08 18:49:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ooz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3OOZ # _exptl.entry_id 3OOZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 433.399 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (5R)-2-amino-5-[4-(difluoromethoxy)phenyl]-5-[4-fluoro-3-(5-fluoropent-1-yn-1-yl)phenyl]-3-methyl-3,5-dihydro-4H-imidazol-4-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.91 _cell.angle_gamma 90 _cell.entry_id 3OOZ _cell.length_a 72.927 _cell.length_b 104.664 _cell.length_c 50.54 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OOZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 171 A CYS 217 1_555 A SG CYS 375 A CYS 421 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf2 A SG CYS 233 A CYS 279 1_555 A SG CYS 398 A CYS 444 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf3 A SG CYS 285 A CYS 331 1_555 A SG CYS 335 A CYS 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? # _chem_comp.formula 'C22 H19 F4 N3 O2' _chem_comp.formula_weight 433.399 _chem_comp.id ZOO _chem_comp.mon_nstd_flag . _chem_comp.name (5R)-2-amino-5-[4-(difluoromethoxy)phenyl]-5-[4-fluoro-3-(5-fluoropent-1-yn-1-yl)phenyl]-3-methyl-3,5-dihydro-4H-imidazol-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N1 ZOO sing 376 n n F1 C11 ZOO sing 377 n n N1 C2 ZOO sing 378 n n N1 C4 ZOO sing 379 n n O1 C2 ZOO doub 380 n n C2 C3 ZOO sing 381 n n F2 C11 ZOO sing 382 n n N2 C3 ZOO sing 383 n n N2 C4 ZOO doub 384 n n O2 C8 ZOO sing 385 n n O2 C11 ZOO sing 386 n n C3 C5 ZOO sing 387 n n C3 C12 ZOO sing 388 n n F3 C22 ZOO sing 389 n n N3 C4 ZOO sing 390 n n F4 C15 ZOO sing 391 n n C5 C6 ZOO doub 392 n y C5 C10 ZOO sing 393 n y C6 C7 ZOO sing 394 n y C7 C8 ZOO doub 395 n y C8 C9 ZOO sing 396 n y C9 C10 ZOO doub 397 n y C12 C13 ZOO doub 398 n y C12 C17 ZOO sing 399 n y C13 C14 ZOO sing 400 n y C14 C15 ZOO doub 401 n y C15 C16 ZOO sing 402 n y C16 C17 ZOO doub 403 n y C16 C18 ZOO sing 404 n n C18 C19 ZOO trip 405 n n C19 C20 ZOO sing 406 n n C20 C21 ZOO sing 407 n n C21 C22 ZOO sing 408 n n C1 H1 ZOO sing 409 n n C1 H1A ZOO sing 410 n n C1 H1B ZOO sing 411 n n N3 HN3 ZOO sing 412 n n N3 HN3A ZOO sing 413 n n C6 H6 ZOO sing 414 n n C7 H7 ZOO sing 415 n n C9 H9 ZOO sing 416 n n C10 H10 ZOO sing 417 n n C11 H11 ZOO sing 418 n n C13 H13 ZOO sing 419 n n C14 H14 ZOO sing 420 n n C17 H17 ZOO sing 421 n n C20 H20 ZOO sing 422 n n C20 H20A ZOO sing 423 n n C21 H21 ZOO sing 424 n n C21 H21A ZOO sing 425 n n C22 H22 ZOO sing 426 n n C22 H22A ZOO sing 427 n n # _atom_sites.entry_id 3OOZ _atom_sites.fract_transf_matrix[1][1] 0.013712 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001178 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009554 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019859 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZOO A 1 1 1 ZOO ZOO . C 3 HOH A 1 2 2 HOH HOH . C 3 HOH A 2 3 3 HOH HOH . C 3 HOH A 3 4 4 HOH HOH . C 3 HOH A 4 5 5 HOH HOH . C 3 HOH A 5 6 6 HOH HOH . C 3 HOH A 6 7 7 HOH HOH . C 3 HOH A 7 8 8 HOH HOH . C 3 HOH A 8 9 9 HOH HOH . C 3 HOH A 9 10 10 HOH HOH . C 3 HOH A 10 11 11 HOH HOH . C 3 HOH A 11 12 12 HOH HOH . C 3 HOH A 12 13 13 HOH HOH . C 3 HOH A 13 14 14 HOH HOH . C 3 HOH A 14 15 15 HOH HOH . C 3 HOH A 15 16 16 HOH HOH . C 3 HOH A 16 17 17 HOH HOH . C 3 HOH A 17 18 18 HOH HOH . C 3 HOH A 18 19 19 HOH HOH . C 3 HOH A 19 20 20 HOH HOH . C 3 HOH A 20 21 21 HOH HOH . C 3 HOH A 21 22 22 HOH HOH . C 3 HOH A 22 23 23 HOH HOH . C 3 HOH A 23 24 24 HOH HOH . C 3 HOH A 24 25 25 HOH HOH . C 3 HOH A 25 26 26 HOH HOH . C 3 HOH A 26 27 27 HOH HOH . C 3 HOH A 27 28 28 HOH HOH . C 3 HOH A 28 29 29 HOH HOH . C 3 HOH A 29 30 30 HOH HOH . C 3 HOH A 30 31 31 HOH HOH . C 3 HOH A 31 32 32 HOH HOH . C 3 HOH A 32 33 33 HOH HOH . C 3 HOH A 33 34 34 HOH HOH . C 3 HOH A 34 35 35 HOH HOH . C 3 HOH A 35 36 36 HOH HOH . C 3 HOH A 36 37 37 HOH HOH . C 3 HOH A 37 38 38 HOH HOH . C 3 HOH A 38 39 39 HOH HOH . C 3 HOH A 39 40 40 HOH HOH . C 3 HOH A 40 41 41 HOH HOH . C 3 HOH A 41 42 42 HOH HOH . C 3 HOH A 42 43 43 HOH HOH . C 3 HOH A 43 44 44 HOH HOH . C 3 HOH A 44 45 45 HOH HOH . C 3 HOH A 45 46 46 HOH HOH . C 3 HOH A 46 462 1 HOH HOH . C 3 HOH A 47 463 47 HOH HOH . C 3 HOH A 48 464 48 HOH HOH . C 3 HOH A 49 465 49 HOH HOH . C 3 HOH A 50 466 50 HOH HOH . C 3 HOH A 51 467 52 HOH HOH . C 3 HOH A 52 468 53 HOH HOH . C 3 HOH A 53 469 54 HOH HOH . C 3 HOH A 54 470 55 HOH HOH . C 3 HOH A 55 471 56 HOH HOH . C 3 HOH A 56 472 57 HOH HOH . C 3 HOH A 57 473 58 HOH HOH . C 3 HOH A 58 474 59 HOH HOH . C 3 HOH A 59 475 60 HOH HOH . C 3 HOH A 60 476 61 HOH HOH . C 3 HOH A 61 477 62 HOH HOH . C 3 HOH A 62 478 63 HOH HOH . C 3 HOH A 63 479 64 HOH HOH . C 3 HOH A 64 480 65 HOH HOH . C 3 HOH A 65 481 66 HOH HOH . C 3 HOH A 66 482 67 HOH HOH . C 3 HOH A 67 483 68 HOH HOH . C 3 HOH A 68 484 69 HOH HOH . C 3 HOH A 69 485 70 HOH HOH . C 3 HOH A 70 486 71 HOH HOH . C 3 HOH A 71 487 72 HOH HOH . C 3 HOH A 72 488 75 HOH HOH . C 3 HOH A 73 489 76 HOH HOH . C 3 HOH A 74 490 77 HOH HOH . C 3 HOH A 75 491 79 HOH HOH . C 3 HOH A 76 492 80 HOH HOH . C 3 HOH A 77 493 81 HOH HOH . C 3 HOH A 78 494 82 HOH HOH . C 3 HOH A 79 495 83 HOH HOH . C 3 HOH A 80 496 84 HOH HOH . C 3 HOH A 81 497 85 HOH HOH . C 3 HOH A 82 498 86 HOH HOH . C 3 HOH A 83 499 87 HOH HOH . C 3 HOH A 84 500 88 HOH HOH . C 3 HOH A 85 501 89 HOH HOH . C 3 HOH A 86 502 90 HOH HOH . C 3 HOH A 87 503 91 HOH HOH . C 3 HOH A 88 504 92 HOH HOH . C 3 HOH A 89 505 93 HOH HOH . C 3 HOH A 90 506 94 HOH HOH . C 3 HOH A 91 507 95 HOH HOH . C 3 HOH A 92 508 96 HOH HOH . C 3 HOH A 93 509 97 HOH HOH . C 3 HOH A 94 510 98 HOH HOH . C 3 HOH A 95 511 99 HOH HOH . C 3 HOH A 96 512 100 HOH HOH . C 3 HOH A 97 513 101 HOH HOH . C 3 HOH A 98 514 102 HOH HOH . C 3 HOH A 99 515 104 HOH HOH . C 3 HOH A 100 516 105 HOH HOH . C 3 HOH A 101 517 106 HOH HOH . C 3 HOH A 102 518 107 HOH HOH . C 3 HOH A 103 519 109 HOH HOH . C 3 HOH A 104 520 110 HOH HOH . C 3 HOH A 105 521 111 HOH HOH . C 3 HOH A 106 522 112 HOH HOH . C 3 HOH A 107 523 113 HOH HOH . C 3 HOH A 108 524 115 HOH HOH . C 3 HOH A 109 525 117 HOH HOH . C 3 HOH A 110 526 119 HOH HOH . C 3 HOH A 111 527 120 HOH HOH . C 3 HOH A 112 528 123 HOH HOH . C 3 HOH A 113 529 124 HOH HOH . C 3 HOH A 114 530 125 HOH HOH . C 3 HOH A 115 531 126 HOH HOH . C 3 HOH A 116 532 127 HOH HOH . C 3 HOH A 117 533 128 HOH HOH . C 3 HOH A 118 534 130 HOH HOH . C 3 HOH A 119 535 131 HOH HOH . C 3 HOH A 120 536 133 HOH HOH . C 3 HOH A 121 537 134 HOH HOH . C 3 HOH A 122 538 135 HOH HOH . C 3 HOH A 123 539 136 HOH HOH . C 3 HOH A 124 540 137 HOH HOH . C 3 HOH A 125 541 138 HOH HOH . C 3 HOH A 126 542 139 HOH HOH . C 3 HOH A 127 543 140 HOH HOH . C 3 HOH A 128 544 141 HOH HOH . C 3 HOH A 129 545 143 HOH HOH . C 3 HOH A 130 546 144 HOH HOH . C 3 HOH A 131 547 145 HOH HOH . C 3 HOH A 132 548 146 HOH HOH . C 3 HOH A 133 549 148 HOH HOH . C 3 HOH A 134 550 151 HOH HOH . C 3 HOH A 135 551 154 HOH HOH . C 3 HOH A 136 552 155 HOH HOH . C 3 HOH A 137 553 156 HOH HOH . C 3 HOH A 138 554 157 HOH HOH . C 3 HOH A 139 555 159 HOH HOH . C 3 HOH A 140 556 160 HOH HOH . C 3 HOH A 141 557 162 HOH HOH . C 3 HOH A 142 558 167 HOH HOH . C 3 HOH A 143 559 168 HOH HOH . C 3 HOH A 144 560 169 HOH HOH . C 3 HOH A 145 561 170 HOH HOH . C 3 HOH A 146 562 171 HOH HOH . C 3 HOH A 147 563 174 HOH HOH . C 3 HOH A 148 564 175 HOH HOH . C 3 HOH A 149 565 176 HOH HOH . C 3 HOH A 150 566 177 HOH HOH . C 3 HOH A 151 567 179 HOH HOH . C 3 HOH A 152 568 181 HOH HOH . C 3 HOH A 153 569 182 HOH HOH . C 3 HOH A 154 570 183 HOH HOH . C 3 HOH A 155 571 184 HOH HOH . C 3 HOH A 156 572 186 HOH HOH . C 3 HOH A 157 573 189 HOH HOH . C 3 HOH A 158 574 191 HOH HOH . C 3 HOH A 159 575 192 HOH HOH . C 3 HOH A 160 576 194 HOH HOH . C 3 HOH A 161 577 195 HOH HOH . C 3 HOH A 162 578 196 HOH HOH . C 3 HOH A 163 579 198 HOH HOH . C 3 HOH A 164 580 199 HOH HOH . C 3 HOH A 165 581 200 HOH HOH . C 3 HOH A 166 582 204 HOH HOH . C 3 HOH A 167 583 206 HOH HOH . C 3 HOH A 168 584 207 HOH HOH . C 3 HOH A 169 585 208 HOH HOH . C 3 HOH A 170 586 209 HOH HOH . C 3 HOH A 171 587 210 HOH HOH . C 3 HOH A 172 588 211 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ZOO . . . B 2 15.929 -4.189 17.856 1 18.8 ? C1 ZOO 1 A 1 HETATM 2 F F1 ZOO . . . B 2 17.922 -14.274 16.77 1 27.96 ? F1 ZOO 1 A 1 HETATM 3 N N1 ZOO . . . B 2 15.413 -5.358 17.141 1 19.44 ? N1 ZOO 1 A 1 HETATM 4 O O1 ZOO . . . B 2 14.467 -6.471 18.96 1 19.31 ? O1 ZOO 1 A 1 HETATM 5 C C2 ZOO . . . B 2 14.754 -6.385 17.77 1 19.89 ? C2 ZOO 1 A 1 HETATM 6 F F2 ZOO . . . B 2 16.105 -14.033 15.584 1 26.32 ? F2 ZOO 1 A 1 HETATM 7 N N2 ZOO . . . B 2 14.945 -6.754 15.455 1 19.72 ? N2 ZOO 1 A 1 HETATM 8 O O2 ZOO . . . B 2 16.402 -12.732 17.367 1 23.1 ? O2 ZOO 1 A 1 HETATM 9 C C3 ZOO . . . B 2 14.369 -7.397 16.673 1 20.47 ? C3 ZOO 1 A 1 HETATM 10 F F3 ZOO . . . B 2 10.487 -2.267 12.862 1 27.66 ? F3 ZOO 1 A 1 HETATM 11 N N3 ZOO . . . B 2 16.129 -4.828 14.907 1 17.95 ? N3 ZOO 1 A 1 HETATM 12 C C4 ZOO . . . B 2 15.501 -5.637 15.81 1 18.87 ? C4 ZOO 1 A 1 HETATM 13 F F4 ZOO . . . B 2 8.69 -7.476 16.65 1 20.04 ? F4 ZOO 1 A 1 HETATM 14 C C5 ZOO . . . B 2 14.933 -8.819 16.893 1 19.33 ? C5 ZOO 1 A 1 HETATM 15 C C6 ZOO . . . B 2 15.37 -9.32 18.134 1 20.57 ? C6 ZOO 1 A 1 HETATM 16 C C7 ZOO . . . B 2 15.853 -10.631 18.242 1 20.64 ? C7 ZOO 1 A 1 HETATM 17 C C8 ZOO . . . B 2 15.911 -11.468 17.128 1 20.92 ? C8 ZOO 1 A 1 HETATM 18 C C9 ZOO . . . B 2 15.482 -10.98 15.889 1 20.46 ? C9 ZOO 1 A 1 HETATM 19 C C10 ZOO . . . B 2 15.004 -9.667 15.776 1 18.57 ? C10 ZOO 1 A 1 HETATM 20 C C11 ZOO . . . B 2 17.059 -13.364 16.282 1 24.81 ? C11 ZOO 1 A 1 HETATM 21 C C12 ZOO . . . B 2 12.839 -7.446 16.641 1 19.98 ? C12 ZOO 1 A 1 HETATM 22 C C13 ZOO . . . B 2 12.112 -8.473 17.29 1 20.78 ? C13 ZOO 1 A 1 HETATM 23 C C14 ZOO . . . B 2 10.714 -8.486 17.29 1 21.14 ? C14 ZOO 1 A 1 HETATM 24 C C15 ZOO . . . B 2 10.032 -7.46 16.644 1 20.57 ? C15 ZOO 1 A 1 HETATM 25 C C16 ZOO . . . B 2 10.727 -6.42 16.003 1 20.37 ? C16 ZOO 1 A 1 HETATM 26 C C17 ZOO . . . B 2 12.12 -6.408 16.001 1 20.16 ? C17 ZOO 1 A 1 HETATM 27 C C18 ZOO . . . B 2 10.013 -5.38 15.346 1 20.52 ? C18 ZOO 1 A 1 HETATM 28 C C19 ZOO . . . B 2 9.392 -4.517 14.796 1 21.29 ? C19 ZOO 1 A 1 HETATM 29 C C20 ZOO . . . B 2 8.64 -3.448 14.132 1 21.66 ? C20 ZOO 1 A 1 HETATM 30 C C21 ZOO . . . B 2 9.038 -2.071 14.677 1 24.36 ? C21 ZOO 1 A 1 HETATM 31 C C22 ZOO . . . B 2 10.351 -1.613 14.059 1 25.62 ? C22 ZOO 1 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #