data_3OP6
#
_model_server_result.job_id            ZNqS09myYFDW8ueRux7ELg 
_model_server_result.datetime_utc      '2024-10-10 06:24:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3op6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":201}' 
#
_entry.id    3OP6 
#
_exptl.entry_id    3OP6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3OP6 
_cell.length_a            54.005 
_cell.length_b            63.828 
_cell.length_c            84.986 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3OP6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C MSE 2 A MSE 1 1_555 A N PRO 3 A PRO 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.364 ? 
covale ? covale2 A C LYS 50 A LYS 49 1_555 A N MSE 51 A MSE 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.36 ? 
covale ? covale3 A C MSE 51 A MSE 50 1_555 A N ASP 52 A ASP 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? 
covale ? covale4 A C ALA 56 A ALA 55 1_555 A N MSE 57 A MSE 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? 
covale ? covale5 A C MSE 57 A MSE 56 1_555 A N VAL 58 A VAL 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale6 A C PHE 68 A PHE 67 1_555 A N MSE 69 A MSE 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.355 ? 
covale ? covale7 A C MSE 69 A MSE 68 1_555 A N LYS 70 A LYS 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale8 A C ALA 99 A ALA 98 1_555 A N MSE 100 A MSE 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale9 A C MSE 100 A MSE 99 1_555 A N PRO 101 A PRO 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.365 ? 
covale ? covale10 A C LEU 133 A LEU 132 1_555 A N MSE 134 A MSE 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
covale ? covale11 A C MSE 134 A MSE 133 1_555 A N GLN 135 A GLN 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.31 ? 
covale ? covale12 B C MSE 2 B MSE 1 1_555 B N PRO 3 B PRO 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.362 ? 
covale ? covale13 B C LYS 50 B LYS 49 1_555 B N MSE 51 B MSE 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
covale ? covale14 B C MSE 51 B MSE 50 1_555 B N ASP 52 B ASP 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 ? 
covale ? covale15 B C ALA 56 B ALA 55 1_555 B N MSE 57 B MSE 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale16 B C MSE 57 B MSE 56 1_555 B N VAL 58 B VAL 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? 
covale ? covale17 B C ALA 99 B ALA 98 1_555 B N MSE 100 B MSE 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? 
covale ? covale18 B C MSE 100 B MSE 99 1_555 B N PRO 101 B PRO 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.37 ? 
covale ? covale19 B C LEU 133 B LEU 132 1_555 B N MSE 134 B MSE 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? 
covale ? covale20 B C MSE 134 B MSE 133 1_555 B N GLN 135 B GLN 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.311 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
_atom_sites.entry_id                     3OP6 
_atom_sites.fract_transf_matrix[1][1]    0.018517 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015667 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011767 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 EDO A 1 200 200 EDO EDO . 
D 2 EDO A 1 201 201 EDO EDO . 
E 3 HOH A 1 202 202 HOH HOH . 
E 3 HOH A 2 203 203 HOH HOH . 
E 3 HOH A 3 205 205 HOH HOH . 
E 3 HOH A 4 206 206 HOH HOH . 
E 3 HOH A 5 207 207 HOH HOH . 
E 3 HOH A 6 208 208 HOH HOH . 
E 3 HOH A 7 209 209 HOH HOH . 
E 3 HOH A 8 210 210 HOH HOH . 
E 3 HOH A 9 211 211 HOH HOH . 
E 3 HOH A 10 212 212 HOH HOH . 
E 3 HOH A 11 213 213 HOH HOH . 
E 3 HOH A 12 216 216 HOH HOH . 
E 3 HOH A 13 217 217 HOH HOH . 
E 3 HOH A 14 218 218 HOH HOH . 
E 3 HOH A 15 219 219 HOH HOH . 
E 3 HOH A 16 220 220 HOH HOH . 
E 3 HOH A 17 221 221 HOH HOH . 
E 3 HOH A 18 224 224 HOH HOH . 
E 3 HOH A 19 229 229 HOH HOH . 
E 3 HOH A 20 230 230 HOH HOH . 
E 3 HOH A 21 231 231 HOH HOH . 
E 3 HOH A 22 232 232 HOH HOH . 
E 3 HOH A 23 233 233 HOH HOH . 
E 3 HOH A 24 234 234 HOH HOH . 
E 3 HOH A 25 235 235 HOH HOH . 
E 3 HOH A 26 236 236 HOH HOH . 
E 3 HOH A 27 237 237 HOH HOH . 
E 3 HOH A 28 238 238 HOH HOH . 
E 3 HOH A 29 239 239 HOH HOH . 
E 3 HOH A 30 240 240 HOH HOH . 
E 3 HOH A 31 241 241 HOH HOH . 
E 3 HOH A 32 242 242 HOH HOH . 
E 3 HOH A 33 243 243 HOH HOH . 
E 3 HOH A 34 244 244 HOH HOH . 
E 3 HOH A 35 245 245 HOH HOH . 
E 3 HOH A 36 246 246 HOH HOH . 
E 3 HOH A 37 247 247 HOH HOH . 
E 3 HOH A 38 248 248 HOH HOH . 
E 3 HOH A 39 249 249 HOH HOH . 
E 3 HOH A 40 250 250 HOH HOH . 
E 3 HOH A 41 251 251 HOH HOH . 
E 3 HOH A 42 252 252 HOH HOH . 
E 3 HOH A 43 253 253 HOH HOH . 
E 3 HOH A 44 254 254 HOH HOH . 
E 3 HOH A 45 255 255 HOH HOH . 
E 3 HOH A 46 256 256 HOH HOH . 
E 3 HOH A 47 257 257 HOH HOH . 
E 3 HOH A 48 258 258 HOH HOH . 
E 3 HOH A 49 259 259 HOH HOH . 
E 3 HOH A 50 260 260 HOH HOH . 
E 3 HOH A 51 261 261 HOH HOH . 
E 3 HOH A 52 262 262 HOH HOH . 
E 3 HOH A 53 263 263 HOH HOH . 
E 3 HOH A 54 266 266 HOH HOH . 
E 3 HOH A 55 299 299 HOH HOH . 
E 3 HOH A 56 300 300 HOH HOH . 
E 3 HOH A 57 304 304 HOH HOH . 
E 3 HOH A 58 305 305 HOH HOH . 
E 3 HOH A 59 306 306 HOH HOH . 
E 3 HOH A 60 307 307 HOH HOH . 
E 3 HOH A 61 308 308 HOH HOH . 
E 3 HOH A 62 309 309 HOH HOH . 
E 3 HOH A 63 310 310 HOH HOH . 
E 3 HOH A 64 311 311 HOH HOH . 
E 3 HOH A 65 312 312 HOH HOH . 
E 3 HOH A 66 313 313 HOH HOH . 
E 3 HOH A 67 314 314 HOH HOH . 
E 3 HOH A 68 315 315 HOH HOH . 
E 3 HOH A 69 316 316 HOH HOH . 
E 3 HOH A 70 317 317 HOH HOH . 
E 3 HOH A 71 318 318 HOH HOH . 
E 3 HOH A 72 319 319 HOH HOH . 
E 3 HOH A 73 320 320 HOH HOH . 
E 3 HOH A 74 321 321 HOH HOH . 
E 3 HOH A 75 322 322 HOH HOH . 
E 3 HOH A 76 323 323 HOH HOH . 
E 3 HOH A 77 324 324 HOH HOH . 
E 3 HOH A 78 325 325 HOH HOH . 
E 3 HOH A 79 326 326 HOH HOH . 
E 3 HOH A 80 327 327 HOH HOH . 
E 3 HOH A 81 328 328 HOH HOH . 
E 3 HOH A 82 330 330 HOH HOH . 
E 3 HOH A 83 331 331 HOH HOH . 
E 3 HOH A 84 334 334 HOH HOH . 
E 3 HOH A 85 348 348 HOH HOH . 
E 3 HOH A 86 349 349 HOH HOH . 
E 3 HOH A 87 350 350 HOH HOH . 
E 3 HOH A 88 351 351 HOH HOH . 
E 3 HOH A 89 352 352 HOH HOH . 
E 3 HOH A 90 359 359 HOH HOH . 
E 3 HOH A 91 360 360 HOH HOH . 
E 3 HOH A 92 361 361 HOH HOH . 
E 3 HOH A 93 362 362 HOH HOH . 
F 3 HOH B 1 204 204 HOH HOH . 
F 3 HOH B 2 214 214 HOH HOH . 
F 3 HOH B 3 215 215 HOH HOH . 
F 3 HOH B 4 222 222 HOH HOH . 
F 3 HOH B 5 223 223 HOH HOH . 
F 3 HOH B 6 225 225 HOH HOH . 
F 3 HOH B 7 226 226 HOH HOH . 
F 3 HOH B 8 227 227 HOH HOH . 
F 3 HOH B 9 228 228 HOH HOH . 
F 3 HOH B 10 264 264 HOH HOH . 
F 3 HOH B 11 265 265 HOH HOH . 
F 3 HOH B 12 267 267 HOH HOH . 
F 3 HOH B 13 268 268 HOH HOH . 
F 3 HOH B 14 269 269 HOH HOH . 
F 3 HOH B 15 270 270 HOH HOH . 
F 3 HOH B 16 271 271 HOH HOH . 
F 3 HOH B 17 272 272 HOH HOH . 
F 3 HOH B 18 273 273 HOH HOH . 
F 3 HOH B 19 274 274 HOH HOH . 
F 3 HOH B 20 275 275 HOH HOH . 
F 3 HOH B 21 276 276 HOH HOH . 
F 3 HOH B 22 277 277 HOH HOH . 
F 3 HOH B 23 278 278 HOH HOH . 
F 3 HOH B 24 279 279 HOH HOH . 
F 3 HOH B 25 280 280 HOH HOH . 
F 3 HOH B 26 281 281 HOH HOH . 
F 3 HOH B 27 282 282 HOH HOH . 
F 3 HOH B 28 283 283 HOH HOH . 
F 3 HOH B 29 284 284 HOH HOH . 
F 3 HOH B 30 285 285 HOH HOH . 
F 3 HOH B 31 286 286 HOH HOH . 
F 3 HOH B 32 287 287 HOH HOH . 
F 3 HOH B 33 288 288 HOH HOH . 
F 3 HOH B 34 289 289 HOH HOH . 
F 3 HOH B 35 290 290 HOH HOH . 
F 3 HOH B 36 291 291 HOH HOH . 
F 3 HOH B 37 292 292 HOH HOH . 
F 3 HOH B 38 293 293 HOH HOH . 
F 3 HOH B 39 294 294 HOH HOH . 
F 3 HOH B 40 295 295 HOH HOH . 
F 3 HOH B 41 296 296 HOH HOH . 
F 3 HOH B 42 297 297 HOH HOH . 
F 3 HOH B 43 298 298 HOH HOH . 
F 3 HOH B 44 301 301 HOH HOH . 
F 3 HOH B 45 302 302 HOH HOH . 
F 3 HOH B 46 303 303 HOH HOH . 
F 3 HOH B 47 329 329 HOH HOH . 
F 3 HOH B 48 332 332 HOH HOH . 
F 3 HOH B 49 333 333 HOH HOH . 
F 3 HOH B 50 335 335 HOH HOH . 
F 3 HOH B 51 336 336 HOH HOH . 
F 3 HOH B 52 337 337 HOH HOH . 
F 3 HOH B 53 338 338 HOH HOH . 
F 3 HOH B 54 339 339 HOH HOH . 
F 3 HOH B 55 340 340 HOH HOH . 
F 3 HOH B 56 341 341 HOH HOH . 
F 3 HOH B 57 342 342 HOH HOH . 
F 3 HOH B 58 343 343 HOH HOH . 
F 3 HOH B 59 344 344 HOH HOH . 
F 3 HOH B 60 345 345 HOH HOH . 
F 3 HOH B 61 346 346 HOH HOH . 
F 3 HOH B 62 347 347 HOH HOH . 
F 3 HOH B 63 353 353 HOH HOH . 
F 3 HOH B 64 354 354 HOH HOH . 
F 3 HOH B 65 355 355 HOH HOH . 
F 3 HOH B 66 356 356 HOH HOH . 
F 3 HOH B 67 357 357 HOH HOH . 
F 3 HOH B 68 358 358 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 2 -34.395 27.689 6.37 1 40.44 ? C1 EDO 201 A 1 
HETATM 2 O O1 EDO . . . D 2 -34.404 26.762 5.277 1 38.95 ? O1 EDO 201 A 1 
HETATM 3 C C2 EDO . . . D 2 -34.898 29.054 5.92 1 37.78 ? C2 EDO 201 A 1 
HETATM 4 O O2 EDO . . . D 2 -34.081 30.126 6.413 1 40.57 ? O2 EDO 201 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           293 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           4 
#