data_3OPC # _model_server_result.job_id ClkNaFXFmdgXAe9Q5sXY0Q _model_server_result.datetime_utc '2024-11-12 20:39:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3opc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":152}' # _entry.id 3OPC # _exptl.entry_id 3OPC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3OPC _cell.length_a 66.57 _cell.length_b 90.39 _cell.length_c 49.19 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OPC _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 4 A MSE 1 1_555 A N ASN 5 A ASN 2 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C MSE 4 A MSE 1 1_555 A N ASN 5 A ASN 2 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.331 ? covale ? covale3 A C LEU 34 A LEU 31 1_555 A N MSE 35 A MSE 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A C MSE 35 A MSE 32 1_555 A N ASP 36 A ASP 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 B C ALA 3 B ALA 0 1_555 B N MSE 4 B MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale6 B C MSE 4 B MSE 1 1_555 B N ASN 5 B ASN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale7 B C LEU 34 B LEU 31 1_555 B N MSE 35 B MSE 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale8 B C MSE 35 B MSE 32 1_555 B N ASP 36 B ASP 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # _atom_sites.entry_id 3OPC _atom_sites.fract_transf_matrix[1][1] 0.015023 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011063 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020328 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 152 1 GOL GOL . D 3 HOH A 1 153 1 HOH HOH . D 3 HOH A 2 154 3 HOH HOH . D 3 HOH A 3 155 4 HOH HOH . D 3 HOH A 4 156 5 HOH HOH . D 3 HOH A 5 157 6 HOH HOH . D 3 HOH A 6 158 8 HOH HOH . D 3 HOH A 7 159 10 HOH HOH . D 3 HOH A 8 160 11 HOH HOH . D 3 HOH A 9 161 12 HOH HOH . D 3 HOH A 10 162 15 HOH HOH . D 3 HOH A 11 163 17 HOH HOH . D 3 HOH A 12 164 19 HOH HOH . D 3 HOH A 13 165 20 HOH HOH . D 3 HOH A 14 166 21 HOH HOH . D 3 HOH A 15 167 24 HOH HOH . D 3 HOH A 16 168 27 HOH HOH . D 3 HOH A 17 169 31 HOH HOH . D 3 HOH A 18 170 34 HOH HOH . D 3 HOH A 19 171 35 HOH HOH . D 3 HOH A 20 172 36 HOH HOH . D 3 HOH A 21 173 39 HOH HOH . D 3 HOH A 22 174 41 HOH HOH . D 3 HOH A 23 175 43 HOH HOH . D 3 HOH A 24 176 47 HOH HOH . D 3 HOH A 25 177 48 HOH HOH . D 3 HOH A 26 178 49 HOH HOH . D 3 HOH A 27 179 50 HOH HOH . D 3 HOH A 28 180 51 HOH HOH . D 3 HOH A 29 181 57 HOH HOH . D 3 HOH A 30 182 58 HOH HOH . D 3 HOH A 31 183 59 HOH HOH . D 3 HOH A 32 184 61 HOH HOH . D 3 HOH A 33 185 62 HOH HOH . D 3 HOH A 34 186 65 HOH HOH . D 3 HOH A 35 187 66 HOH HOH . D 3 HOH A 36 188 70 HOH HOH . D 3 HOH A 37 189 73 HOH HOH . D 3 HOH A 38 190 75 HOH HOH . D 3 HOH A 39 191 76 HOH HOH . D 3 HOH A 40 192 77 HOH HOH . D 3 HOH A 41 193 79 HOH HOH . D 3 HOH A 42 194 80 HOH HOH . D 3 HOH A 43 195 83 HOH HOH . E 3 HOH B 1 152 2 HOH HOH . E 3 HOH B 2 153 7 HOH HOH . E 3 HOH B 3 154 9 HOH HOH . E 3 HOH B 4 155 13 HOH HOH . E 3 HOH B 5 156 14 HOH HOH . E 3 HOH B 6 157 16 HOH HOH . E 3 HOH B 7 158 18 HOH HOH . E 3 HOH B 8 159 22 HOH HOH . E 3 HOH B 9 160 23 HOH HOH . E 3 HOH B 10 161 25 HOH HOH . E 3 HOH B 11 162 26 HOH HOH . E 3 HOH B 12 163 28 HOH HOH . E 3 HOH B 13 164 29 HOH HOH . E 3 HOH B 14 165 30 HOH HOH . E 3 HOH B 15 166 32 HOH HOH . E 3 HOH B 16 167 33 HOH HOH . E 3 HOH B 17 168 37 HOH HOH . E 3 HOH B 18 169 38 HOH HOH . E 3 HOH B 19 170 40 HOH HOH . E 3 HOH B 20 171 42 HOH HOH . E 3 HOH B 21 172 44 HOH HOH . E 3 HOH B 22 173 45 HOH HOH . E 3 HOH B 23 174 46 HOH HOH . E 3 HOH B 24 175 52 HOH HOH . E 3 HOH B 25 176 53 HOH HOH . E 3 HOH B 26 177 54 HOH HOH . E 3 HOH B 27 178 55 HOH HOH . E 3 HOH B 28 179 56 HOH HOH . E 3 HOH B 29 180 60 HOH HOH . E 3 HOH B 30 181 63 HOH HOH . E 3 HOH B 31 182 64 HOH HOH . E 3 HOH B 32 183 67 HOH HOH . E 3 HOH B 33 184 68 HOH HOH . E 3 HOH B 34 185 69 HOH HOH . E 3 HOH B 35 186 71 HOH HOH . E 3 HOH B 36 187 72 HOH HOH . E 3 HOH B 37 188 74 HOH HOH . E 3 HOH B 38 189 78 HOH HOH . E 3 HOH B 39 190 81 HOH HOH . E 3 HOH B 40 191 82 HOH HOH . E 3 HOH B 41 192 84 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 10.999 -6.562 10.671 1 51.06 ? C1 GOL 152 A 1 HETATM 2 O O1 GOL . . . C 2 10.529 -5.255 10.859 1 51.53 ? O1 GOL 152 A 1 HETATM 3 C C2 GOL . . . C 2 10.321 -7.126 9.437 1 52.42 ? C2 GOL 152 A 1 HETATM 4 O O2 GOL . . . C 2 10.539 -6.275 8.332 1 53.22 ? O2 GOL 152 A 1 HETATM 5 C C3 GOL . . . C 2 10.871 -8.519 9.173 1 52.82 ? C3 GOL 152 A 1 HETATM 6 O O3 GOL . . . C 2 10.069 -9.459 9.855 1 53.22 ? O3 GOL 152 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #