data_3OPE
#
_model_server_result.job_id            IcNn8LE3cnn-97nURZil8Q 
_model_server_result.datetime_utc      '2024-11-21 17:55:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ope 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":8}' 
#
_entry.id    3OPE 
#
_exptl.entry_id    3OPE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              398.437 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYLMETHIONINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3OPE 
_cell.length_a            59.53 
_cell.length_b            59.53 
_cell.length_c            233.804 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3OPE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,K 1 1 
B,G,H,I,J,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 C ZN ZN . A ZN 1 1_555 A SG CYS 154 A CYS 2220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? 
metalc ? metalc2 C ZN ZN . A ZN 1 1_555 A SG CYS 202 A CYS 2268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? 
metalc ? metalc3 C ZN ZN . A ZN 1 1_555 A SG CYS 204 A CYS 2270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.728 ? 
metalc ? metalc4 C ZN ZN . A ZN 1 1_555 A SG CYS 209 A CYS 2275 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? 
metalc ? metalc5 D ZN ZN . A ZN 2 1_555 A SG CYS 51 A CYS 2117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? 
metalc ? metalc6 D ZN ZN . A ZN 2 1_555 A SG CYS 56 A CYS 2122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? 
metalc ? metalc7 D ZN ZN . A ZN 2 1_555 A SG CYS 62 A CYS 2128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.67 ? 
metalc ? metalc8 E ZN ZN . A ZN 4 1_555 A SG CYS 25 A CYS 2091 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.767 ? 
metalc ? metalc9 E ZN ZN . A ZN 4 1_555 A SG CYS 27 A CYS 2093 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? 
metalc ? metalc10 E ZN ZN . A ZN 4 1_555 A SG CYS 38 A CYS 2104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? 
metalc ? metalc11 E ZN ZN . A ZN 4 1_555 A SG CYS 42 A CYS 2108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.847 ? 
metalc ? metalc12 G ZN ZN . B ZN 3 1_555 B SG CYS 154 B CYS 2220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? 
metalc ? metalc13 G ZN ZN . B ZN 3 1_555 B SG CYS 202 B CYS 2268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.945 ? 
metalc ? metalc14 H ZN ZN . B ZN 5 1_555 B SG CYS 51 B CYS 2117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.745 ? 
metalc ? metalc15 H ZN ZN . B ZN 5 1_555 B SG CYS 56 B CYS 2122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? 
metalc ? metalc16 H ZN ZN . B ZN 5 1_555 B SG CYS 62 B CYS 2128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? 
metalc ? metalc17 I ZN ZN . B ZN 6 1_555 B SG CYS 38 B CYS 2104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.775 ? 
metalc ? metalc18 I ZN ZN . B ZN 6 1_555 B SG CYS 42 B CYS 2108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.608 ? 
#
_chem_comp.formula           'C15 H22 N6 O5 S' 
_chem_comp.formula_weight    398.437 
_chem_comp.id                SAM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              S-ADENOSYLMETHIONINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAM sing 277 n n 
N HN1 SAM sing 278 n n 
N HN2 SAM sing 279 n n 
CA C SAM sing 280 n n 
CA CB SAM sing 281 n n 
CA HA SAM sing 282 n n 
C O SAM doub 283 n n 
C OXT SAM sing 284 n n 
CB CG SAM sing 285 n n 
CB HB1 SAM sing 286 n n 
CB HB2 SAM sing 287 n n 
CG SD SAM sing 288 n n 
CG HG1 SAM sing 289 n n 
CG HG2 SAM sing 290 n n 
SD CE SAM sing 291 n n 
SD C5' SAM sing 292 n n 
CE HE1 SAM sing 293 n n 
CE HE2 SAM sing 294 n n 
CE HE3 SAM sing 295 n n 
C5' C4' SAM sing 296 n n 
C5' "H5'1" SAM sing 297 n n 
C5' "H5'2" SAM sing 298 n n 
C4' O4' SAM sing 299 n n 
C4' C3' SAM sing 300 n n 
C4' H4' SAM sing 301 n n 
O4' C1' SAM sing 302 n n 
C3' O3' SAM sing 303 n n 
C3' C2' SAM sing 304 n n 
C3' H3' SAM sing 305 n n 
O3' HO3' SAM sing 306 n n 
C2' O2' SAM sing 307 n n 
C2' C1' SAM sing 308 n n 
C2' H2' SAM sing 309 n n 
O2' HO2' SAM sing 310 n n 
C1' N9 SAM sing 311 n n 
C1' H1' SAM sing 312 n n 
N9 C8 SAM sing 313 n y 
N9 C4 SAM sing 314 n y 
C8 N7 SAM doub 315 n y 
C8 H8 SAM sing 316 n n 
N7 C5 SAM sing 317 n y 
C5 C6 SAM sing 318 n y 
C5 C4 SAM doub 319 n y 
C6 N6 SAM sing 320 n n 
C6 N1 SAM doub 321 n y 
N6 HN61 SAM sing 322 n n 
N6 HN62 SAM sing 323 n n 
N1 C2 SAM sing 324 n y 
C2 N3 SAM doub 325 n y 
C2 H2 SAM sing 326 n n 
N3 C4 SAM sing 327 n y 
#
_atom_sites.entry_id                     3OPE 
_atom_sites.fract_transf_matrix[1][1]    0.016798 
_atom_sites.fract_transf_matrix[1][2]    0.009698 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019397 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004277 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 1 1 ZN ZN . 
D 2 ZN A 1 2 2 ZN ZN . 
E 2 ZN A 1 4 4 ZN ZN . 
F 3 SAM A 1 7 7 SAM SAM . 
G 2 ZN B 1 3 3 ZN ZN . 
H 2 ZN B 1 5 5 ZN ZN . 
I 2 ZN B 1 6 6 ZN ZN . 
J 3 SAM B 1 8 8 SAM SAM . 
K 4 HOH A 1 3 3 HOH WAT . 
K 4 HOH A 2 8 8 HOH WAT . 
K 4 HOH A 3 10 10 HOH WAT . 
K 4 HOH A 4 11 11 HOH WAT . 
K 4 HOH A 5 12 12 HOH WAT . 
K 4 HOH A 6 13 13 HOH WAT . 
K 4 HOH A 7 14 14 HOH WAT . 
K 4 HOH A 8 15 15 HOH WAT . 
K 4 HOH A 9 19 19 HOH WAT . 
K 4 HOH A 10 22 22 HOH WAT . 
K 4 HOH A 11 23 23 HOH WAT . 
K 4 HOH A 12 2289 4 HOH WAT . 
L 4 HOH B 1 1 1 HOH WAT . 
L 4 HOH B 2 2 2 HOH WAT . 
L 4 HOH B 3 7 7 HOH WAT . 
L 4 HOH B 4 9 9 HOH WAT . 
L 4 HOH B 5 16 16 HOH WAT . 
L 4 HOH B 6 17 17 HOH WAT . 
L 4 HOH B 7 18 18 HOH WAT . 
L 4 HOH B 8 20 20 HOH WAT . 
L 4 HOH B 9 21 21 HOH WAT . 
L 4 HOH B 10 24 24 HOH WAT . 
L 4 HOH B 11 25 25 HOH WAT . 
L 4 HOH B 12 26 26 HOH WAT . 
L 4 HOH B 13 27 27 HOH WAT . 
L 4 HOH B 14 2289 5 HOH WAT . 
L 4 HOH B 15 2290 6 HOH WAT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAM . . . J 3 -40.633 -7.248 20.98 1 98.28 ? N SAM 8 B 1 
HETATM 2 C CA SAM . . . J 3 -40.305 -6.474 19.735 1 98.66 ? CA SAM 8 B 1 
HETATM 3 C C SAM . . . J 3 -38.947 -6.924 19.173 1 99.79 ? C SAM 8 B 1 
HETATM 4 O O SAM . . . J 3 -38.424 -6.344 18.198 1 100.84 ? O SAM 8 B 1 
HETATM 5 O OXT SAM . . . J 3 -38.299 -7.892 19.661 1 101.3 ? OXT SAM 8 B 1 
HETATM 6 C CB SAM . . . J 3 -40.529 -4.968 19.988 1 97.56 ? CB SAM 8 B 1 
HETATM 7 C CG SAM . . . J 3 -42.016 -4.5 19.969 1 96.14 ? CG SAM 8 B 1 
HETATM 8 S SD SAM . . . J 3 -42.524 -4.674 18.218 1 95.73 ? SD SAM 8 B 1 
HETATM 9 C CE SAM . . . J 3 -42.887 -3.008 17.678 1 94.06 ? CE SAM 8 B 1 
HETATM 10 C C5' SAM . . . J 3 -44.166 -5.43 18.284 1 95.48 ? C5' SAM 8 B 1 
HETATM 11 C C4' SAM . . . J 3 -44.094 -6.958 18.297 1 97.65 ? C4' SAM 8 B 1 
HETATM 12 O O4' SAM . . . J 3 -43.536 -7.527 19.448 1 98.1 ? O4' SAM 8 B 1 
HETATM 13 C C3' SAM . . . J 3 -45.434 -7.65 18.185 1 98.42 ? C3' SAM 8 B 1 
HETATM 14 O O3' SAM . . . J 3 -45.779 -7.59 16.803 1 99.24 ? O3' SAM 8 B 1 
HETATM 15 C C2' SAM . . . J 3 -45.141 -9.032 18.742 1 99.17 ? C2' SAM 8 B 1 
HETATM 16 O O2' SAM . . . J 3 -44.469 -9.785 17.692 1 99.15 ? O2' SAM 8 B 1 
HETATM 17 C C1' SAM . . . J 3 -44.221 -8.65 19.875 1 99.57 ? C1' SAM 8 B 1 
HETATM 18 N N9 SAM . . . J 3 -44.967 -8.201 21.105 1 100.88 ? N9 SAM 8 B 1 
HETATM 19 C C8 SAM . . . J 3 -45.036 -6.961 21.656 1 100.89 ? C8 SAM 8 B 1 
HETATM 20 N N7 SAM . . . J 3 -45.835 -7.001 22.752 1 100.89 ? N7 SAM 8 B 1 
HETATM 21 C C5 SAM . . . J 3 -46.274 -8.292 22.917 1 101.63 ? C5 SAM 8 B 1 
HETATM 22 C C6 SAM . . . J 3 -47.085 -9.014 23.815 1 102.34 ? C6 SAM 8 B 1 
HETATM 23 N N6 SAM . . . J 3 -47.71 -8.515 24.879 1 102.15 ? N6 SAM 8 B 1 
HETATM 24 N N1 SAM . . . J 3 -47.331 -10.357 23.594 1 103.61 ? N1 SAM 8 B 1 
HETATM 25 C C2 SAM . . . J 3 -46.75 -11.02 22.574 1 103.53 ? C2 SAM 8 B 1 
HETATM 26 N N3 SAM . . . J 3 -45.965 -10.372 21.693 1 102.9 ? N3 SAM 8 B 1 
HETATM 27 C C4 SAM . . . J 3 -45.712 -9.031 21.87 1 101.58 ? C4 SAM 8 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           335 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           27 
#