data_3OPR # _model_server_result.job_id fCKxcSyndKOwZTUdeX4PuA _model_server_result.datetime_utc '2024-11-05 23:44:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3opr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1}' # _entry.id 3OPR # _exptl.entry_id 3OPR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 365.356 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3R)-4-[(4-CARBOXYBUTANOYL)OXY]-N-[(1E)-3-OXOPROP-1-EN-1-YL]-3-SULFINO-D-VALINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3OPR _cell.length_a 49.43 _cell.length_b 55.467 _cell.length_c 82.924 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OPR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 73 A CYS 77 1_555 A SG CYS 119 A CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? covale ? covale1 A OG SER 66 A SER 70 1_555 D C7 SA2 . A SA2 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? # _chem_comp.formula 'C13 H19 N O9 S' _chem_comp.formula_weight 365.356 _chem_comp.id SA2 _chem_comp.mon_nstd_flag . _chem_comp.name (3R)-4-[(4-CARBOXYBUTANOYL)OXY]-N-[(1E)-3-OXOPROP-1-EN-1-YL]-3-SULFINO-D-VALINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '4-AZA-5-CARBOXY-6-SULFENATE-6-METHYL-8-OXA-9-OXO-TRIS-2-TRANS-DECENEDIOIC ACID' # _atom_sites.entry_id 3OPR _atom_sites.fract_transf_matrix[1][1] 0.020231 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018029 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012059 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MA4 A 1 400 400 MA4 MA4 . C 2 MA4 A 1 401 401 MA4 MA4 . D 3 SA2 A 1 1 1 SA2 SA2 . E 4 HOH A 1 2 2 HOH HOH . E 4 HOH A 2 3 3 HOH HOH . E 4 HOH A 3 4 4 HOH HOH . E 4 HOH A 4 239 239 HOH HOH . E 4 HOH A 5 253 253 HOH HOH . E 4 HOH A 6 293 1 HOH HOH . E 4 HOH A 7 294 5 HOH HOH . E 4 HOH A 8 295 6 HOH HOH . E 4 HOH A 9 296 7 HOH HOH . E 4 HOH A 10 297 8 HOH HOH . E 4 HOH A 11 298 9 HOH HOH . E 4 HOH A 12 299 10 HOH HOH . E 4 HOH A 13 300 11 HOH HOH . E 4 HOH A 14 301 12 HOH HOH . E 4 HOH A 15 302 13 HOH HOH . E 4 HOH A 16 303 14 HOH HOH . E 4 HOH A 17 304 15 HOH HOH . E 4 HOH A 18 305 16 HOH HOH . E 4 HOH A 19 306 17 HOH HOH . E 4 HOH A 20 307 18 HOH HOH . E 4 HOH A 21 308 19 HOH HOH . E 4 HOH A 22 309 20 HOH HOH . E 4 HOH A 23 310 21 HOH HOH . E 4 HOH A 24 311 22 HOH HOH . E 4 HOH A 25 312 23 HOH HOH . E 4 HOH A 26 313 24 HOH HOH . E 4 HOH A 27 314 25 HOH HOH . E 4 HOH A 28 315 26 HOH HOH . E 4 HOH A 29 316 27 HOH HOH . E 4 HOH A 30 317 28 HOH HOH . E 4 HOH A 31 318 29 HOH HOH . E 4 HOH A 32 319 30 HOH HOH . E 4 HOH A 33 320 31 HOH HOH . E 4 HOH A 34 321 32 HOH HOH . E 4 HOH A 35 322 33 HOH HOH . E 4 HOH A 36 323 34 HOH HOH . E 4 HOH A 37 324 35 HOH HOH . E 4 HOH A 38 325 36 HOH HOH . E 4 HOH A 39 326 37 HOH HOH . E 4 HOH A 40 327 38 HOH HOH . E 4 HOH A 41 328 39 HOH HOH . E 4 HOH A 42 329 40 HOH HOH . E 4 HOH A 43 330 41 HOH HOH . E 4 HOH A 44 331 42 HOH HOH . E 4 HOH A 45 332 43 HOH HOH . E 4 HOH A 46 333 44 HOH HOH . E 4 HOH A 47 334 45 HOH HOH . E 4 HOH A 48 335 46 HOH HOH . E 4 HOH A 49 336 47 HOH HOH . E 4 HOH A 50 337 48 HOH HOH . E 4 HOH A 51 338 49 HOH HOH . E 4 HOH A 52 339 50 HOH HOH . E 4 HOH A 53 340 51 HOH HOH . E 4 HOH A 54 341 52 HOH HOH . E 4 HOH A 55 342 53 HOH HOH . E 4 HOH A 56 343 54 HOH HOH . E 4 HOH A 57 344 55 HOH HOH . E 4 HOH A 58 345 56 HOH HOH . E 4 HOH A 59 346 57 HOH HOH . E 4 HOH A 60 347 58 HOH HOH . E 4 HOH A 61 348 59 HOH HOH . E 4 HOH A 62 349 60 HOH HOH . E 4 HOH A 63 350 61 HOH HOH . E 4 HOH A 64 351 62 HOH HOH . E 4 HOH A 65 352 63 HOH HOH . E 4 HOH A 66 353 65 HOH HOH . E 4 HOH A 67 354 66 HOH HOH . E 4 HOH A 68 355 67 HOH HOH . E 4 HOH A 69 356 68 HOH HOH . E 4 HOH A 70 357 69 HOH HOH . E 4 HOH A 71 358 70 HOH HOH . E 4 HOH A 72 359 71 HOH HOH . E 4 HOH A 73 360 72 HOH HOH . E 4 HOH A 74 361 73 HOH HOH . E 4 HOH A 75 362 74 HOH HOH . E 4 HOH A 76 363 75 HOH HOH . E 4 HOH A 77 364 76 HOH HOH . E 4 HOH A 78 365 77 HOH HOH . E 4 HOH A 79 366 78 HOH HOH . E 4 HOH A 80 367 79 HOH HOH . E 4 HOH A 81 368 80 HOH HOH . E 4 HOH A 82 369 81 HOH HOH . E 4 HOH A 83 370 82 HOH HOH . E 4 HOH A 84 371 83 HOH HOH . E 4 HOH A 85 372 84 HOH HOH . E 4 HOH A 86 373 85 HOH HOH . E 4 HOH A 87 374 86 HOH HOH . E 4 HOH A 88 375 87 HOH HOH . E 4 HOH A 89 376 88 HOH HOH . E 4 HOH A 90 377 89 HOH HOH . E 4 HOH A 91 378 90 HOH HOH . E 4 HOH A 92 379 91 HOH HOH . E 4 HOH A 93 380 92 HOH HOH . E 4 HOH A 94 381 93 HOH HOH . E 4 HOH A 95 382 94 HOH HOH . E 4 HOH A 96 383 95 HOH HOH . E 4 HOH A 97 384 96 HOH HOH . E 4 HOH A 98 385 97 HOH HOH . E 4 HOH A 99 386 98 HOH HOH . E 4 HOH A 100 387 99 HOH HOH . E 4 HOH A 101 388 100 HOH HOH . E 4 HOH A 102 389 101 HOH HOH . E 4 HOH A 103 390 102 HOH HOH . E 4 HOH A 104 391 103 HOH HOH . E 4 HOH A 105 392 104 HOH HOH . E 4 HOH A 106 393 105 HOH HOH . E 4 HOH A 107 394 106 HOH HOH . E 4 HOH A 108 395 107 HOH HOH . E 4 HOH A 109 396 108 HOH HOH . E 4 HOH A 110 397 109 HOH HOH . E 4 HOH A 111 398 110 HOH HOH . E 4 HOH A 112 399 111 HOH HOH . E 4 HOH A 113 402 112 HOH HOH . E 4 HOH A 114 403 113 HOH HOH . E 4 HOH A 115 404 114 HOH HOH . E 4 HOH A 116 405 116 HOH HOH . E 4 HOH A 117 406 117 HOH HOH . E 4 HOH A 118 407 118 HOH HOH . E 4 HOH A 119 408 119 HOH HOH . E 4 HOH A 120 409 120 HOH HOH . E 4 HOH A 121 410 121 HOH HOH . E 4 HOH A 122 411 123 HOH HOH . E 4 HOH A 123 412 124 HOH HOH . E 4 HOH A 124 413 126 HOH HOH . E 4 HOH A 125 414 127 HOH HOH . E 4 HOH A 126 415 128 HOH HOH . E 4 HOH A 127 416 129 HOH HOH . E 4 HOH A 128 417 130 HOH HOH . E 4 HOH A 129 418 131 HOH HOH . E 4 HOH A 130 419 132 HOH HOH . E 4 HOH A 131 420 133 HOH HOH . E 4 HOH A 132 421 134 HOH HOH . E 4 HOH A 133 422 135 HOH HOH . E 4 HOH A 134 423 136 HOH HOH . E 4 HOH A 135 424 137 HOH HOH . E 4 HOH A 136 425 138 HOH HOH . E 4 HOH A 137 426 139 HOH HOH . E 4 HOH A 138 427 140 HOH HOH . E 4 HOH A 139 428 141 HOH HOH . E 4 HOH A 140 429 143 HOH HOH . E 4 HOH A 141 430 144 HOH HOH . E 4 HOH A 142 431 145 HOH HOH . E 4 HOH A 143 432 147 HOH HOH . E 4 HOH A 144 433 148 HOH HOH . E 4 HOH A 145 434 149 HOH HOH . E 4 HOH A 146 435 150 HOH HOH . E 4 HOH A 147 436 151 HOH HOH . E 4 HOH A 148 437 152 HOH HOH . E 4 HOH A 149 438 153 HOH HOH . E 4 HOH A 150 439 154 HOH HOH . E 4 HOH A 151 440 155 HOH HOH . E 4 HOH A 152 441 156 HOH HOH . E 4 HOH A 153 442 157 HOH HOH . E 4 HOH A 154 443 158 HOH HOH . E 4 HOH A 155 444 159 HOH HOH . E 4 HOH A 156 445 160 HOH HOH . E 4 HOH A 157 446 161 HOH HOH . E 4 HOH A 158 447 162 HOH HOH . E 4 HOH A 159 448 163 HOH HOH . E 4 HOH A 160 449 164 HOH HOH . E 4 HOH A 161 450 165 HOH HOH . E 4 HOH A 162 451 166 HOH HOH . E 4 HOH A 163 452 167 HOH HOH . E 4 HOH A 164 453 168 HOH HOH . E 4 HOH A 165 454 169 HOH HOH . E 4 HOH A 166 455 170 HOH HOH . E 4 HOH A 167 456 171 HOH HOH . E 4 HOH A 168 457 172 HOH HOH . E 4 HOH A 169 458 173 HOH HOH . E 4 HOH A 170 459 174 HOH HOH . E 4 HOH A 171 460 175 HOH HOH . E 4 HOH A 172 461 176 HOH HOH . E 4 HOH A 173 462 177 HOH HOH . E 4 HOH A 174 463 178 HOH HOH . E 4 HOH A 175 464 179 HOH HOH . E 4 HOH A 176 465 180 HOH HOH . E 4 HOH A 177 466 181 HOH HOH . E 4 HOH A 178 467 182 HOH HOH . E 4 HOH A 179 468 183 HOH HOH . E 4 HOH A 180 469 184 HOH HOH . E 4 HOH A 181 470 185 HOH HOH . E 4 HOH A 182 471 186 HOH HOH . E 4 HOH A 183 472 187 HOH HOH . E 4 HOH A 184 473 188 HOH HOH . E 4 HOH A 185 474 189 HOH HOH . E 4 HOH A 186 475 190 HOH HOH . E 4 HOH A 187 476 191 HOH HOH . E 4 HOH A 188 477 192 HOH HOH . E 4 HOH A 189 478 194 HOH HOH . E 4 HOH A 190 479 195 HOH HOH . E 4 HOH A 191 480 196 HOH HOH . E 4 HOH A 192 481 197 HOH HOH . E 4 HOH A 193 482 198 HOH HOH . E 4 HOH A 194 483 199 HOH HOH . E 4 HOH A 195 484 200 HOH HOH . E 4 HOH A 196 485 201 HOH HOH . E 4 HOH A 197 486 202 HOH HOH . E 4 HOH A 198 487 203 HOH HOH . E 4 HOH A 199 488 204 HOH HOH . E 4 HOH A 200 489 205 HOH HOH . E 4 HOH A 201 490 206 HOH HOH . E 4 HOH A 202 491 207 HOH HOH . E 4 HOH A 203 492 208 HOH HOH . E 4 HOH A 204 493 209 HOH HOH . E 4 HOH A 205 494 210 HOH HOH . E 4 HOH A 206 495 211 HOH HOH . E 4 HOH A 207 496 212 HOH HOH . E 4 HOH A 208 497 213 HOH HOH . E 4 HOH A 209 498 214 HOH HOH . E 4 HOH A 210 499 215 HOH HOH . E 4 HOH A 211 500 216 HOH HOH . E 4 HOH A 212 501 217 HOH HOH . E 4 HOH A 213 502 218 HOH HOH . E 4 HOH A 214 503 219 HOH HOH . E 4 HOH A 215 504 220 HOH HOH . E 4 HOH A 216 505 221 HOH HOH . E 4 HOH A 217 506 222 HOH HOH . E 4 HOH A 218 507 223 HOH HOH . E 4 HOH A 219 508 224 HOH HOH . E 4 HOH A 220 509 225 HOH HOH . E 4 HOH A 221 510 226 HOH HOH . E 4 HOH A 222 511 227 HOH HOH . E 4 HOH A 223 512 228 HOH HOH . E 4 HOH A 224 513 229 HOH HOH . E 4 HOH A 225 514 230 HOH HOH . E 4 HOH A 226 515 231 HOH HOH . E 4 HOH A 227 516 232 HOH HOH . E 4 HOH A 228 517 233 HOH HOH . E 4 HOH A 229 518 234 HOH HOH . E 4 HOH A 230 519 235 HOH HOH . E 4 HOH A 231 520 236 HOH HOH . E 4 HOH A 232 521 237 HOH HOH . E 4 HOH A 233 522 238 HOH HOH . E 4 HOH A 234 523 240 HOH HOH . E 4 HOH A 235 524 243 HOH HOH . E 4 HOH A 236 525 244 HOH HOH . E 4 HOH A 237 526 245 HOH HOH . E 4 HOH A 238 527 246 HOH HOH . E 4 HOH A 239 528 247 HOH HOH . E 4 HOH A 240 529 249 HOH HOH . E 4 HOH A 241 530 251 HOH HOH . E 4 HOH A 242 531 252 HOH HOH . E 4 HOH A 243 532 254 HOH HOH . E 4 HOH A 244 533 256 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O23 SA2 . . . D 3 34.86 59.877 3.749 1 25.23 ? O23 SA2 1 A 1 HETATM 2 C C20 SA2 . . . D 3 35.513 60.85 3.317 1 23.75 ? C20 SA2 1 A 1 HETATM 3 O O22 SA2 . . . D 3 36.747 60.99 3.447 1 23.71 ? O22 SA2 1 A 1 HETATM 4 C C19 SA2 . . . D 3 34.756 61.925 2.58 1 18.39 ? C19 SA2 1 A 1 HETATM 5 C C18 SA2 . . . D 3 35.011 61.657 1.096 1 23.65 ? C18 SA2 1 A 1 HETATM 6 C C17 SA2 . . . D 3 33.944 62.284 0.213 1 26.76 ? C17 SA2 1 A 1 HETATM 7 C C16 SA2 . . . D 3 33.992 63.784 0.368 1 28.48 ? C16 SA2 1 A 1 HETATM 8 O O24 SA2 . . . D 3 34.931 64.443 -0.059 1 31.13 ? O24 SA2 1 A 1 HETATM 9 O O15 SA2 . . . D 3 32.909 64.445 1.051 1 23.6 ? O15 SA2 1 A 1 HETATM 10 C C14 SA2 . . . D 3 32.983 65.837 1.366 1 25.42 ? C14 SA2 1 A 1 HETATM 11 C C2 SA2 . . . D 3 31.752 66.267 2.149 1 25.02 ? C2 SA2 1 A 1 HETATM 12 S S1 SA2 . . . D 3 31.986 67.857 2.658 1 30.39 ? S1 SA2 1 A 1 HETATM 13 O O13 SA2 . . . D 3 33.078 67.904 3.604 1 29.5 ? O13 SA2 1 A 1 HETATM 14 O O12 SA2 . . . D 3 32.346 68.655 1.519 1 32.99 ? O12 SA2 1 A 1 HETATM 15 C C21 SA2 . . . D 3 30.553 66.182 1.208 1 26.67 ? C21 SA2 1 A 1 HETATM 16 C C3 SA2 . . . D 3 31.534 65.3 3.335 1 25.21 ? C3 SA2 1 A 1 HETATM 17 C C9 SA2 . . . D 3 30.372 65.663 4.221 1 25.86 ? C9 SA2 1 A 1 HETATM 18 O O10 SA2 . . . D 3 30.533 66.491 5.138 1 30.97 ? O10 SA2 1 A 1 HETATM 19 O O11 SA2 . . . D 3 29.277 65.107 4.025 1 31.23 ? O11 SA2 1 A 1 HETATM 20 N N4 SA2 . . . D 3 32.738 65.156 4.148 1 22.92 ? N4 SA2 1 A 1 HETATM 21 C C5 SA2 . . . D 3 33.054 64.067 4.839 1 17.6 ? C5 SA2 1 A 1 HETATM 22 C C6 SA2 . . . D 3 32.256 63.019 5.056 1 17.88 ? C6 SA2 1 A 1 HETATM 23 C C7 SA2 . . . D 3 32.794 61.911 5.835 1 17.11 ? C7 SA2 1 A 1 HETATM 24 O O8 SA2 . . . D 3 33.838 62.058 6.45 1 13.84 ? O8 SA2 1 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 24 #