data_3OPT
#
_model_server_result.job_id            aUOAb_7URi77P0UXcyXdTQ 
_model_server_result.datetime_utc      '2025-04-19 23:36:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3opt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":500}' 
#
_entry.id    3OPT 
#
_exptl.entry_id    3OPT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              58.693 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NICKEL (II) ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3OPT 
_cell.length_a            109.415 
_cell.length_b            109.415 
_cell.length_c            145.958 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3OPT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        172 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 64' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 235 A HIS 235 1_555 C NI NI . A NI 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? 
metalc ? metalc2 A OE1 GLU 237 A GLU 237 1_555 C NI NI . A NI 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? 
metalc ? metalc3 A NE2 HIS 323 A HIS 323 1_555 C NI NI . A NI 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? 
metalc ? metalc4 D O HOH . A HOH 451 1_555 C NI NI . A NI 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.702 ? 
metalc ? metalc5 C NI NI . A NI 500 1_555 B O5 AKG . A AKG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.645 ? 
metalc ? metalc6 C NI NI . A NI 500 1_555 B O2 AKG . A AKG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.647 ? 
#
_chem_comp.formula           'Ni 2' 
_chem_comp.formula_weight    58.693 
_chem_comp.id                NI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NICKEL (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3OPT 
_atom_sites.fract_transf_matrix[1][1]    0.00914 
_atom_sites.fract_transf_matrix[1][2]    0.005277 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010553 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006851 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 AKG A 1 501 501 AKG AKG . 
C 3 NI A 1 500 500 NI NI . 
D 4 HOH A 1 374 1 HOH HOH . 
D 4 HOH A 2 375 2 HOH HOH . 
D 4 HOH A 3 376 3 HOH HOH . 
D 4 HOH A 4 377 4 HOH HOH . 
D 4 HOH A 5 378 5 HOH HOH . 
D 4 HOH A 6 379 6 HOH HOH . 
D 4 HOH A 7 380 7 HOH HOH . 
D 4 HOH A 8 381 8 HOH HOH . 
D 4 HOH A 9 382 9 HOH HOH . 
D 4 HOH A 10 383 10 HOH HOH . 
D 4 HOH A 11 384 11 HOH HOH . 
D 4 HOH A 12 385 12 HOH HOH . 
D 4 HOH A 13 386 13 HOH HOH . 
D 4 HOH A 14 387 14 HOH HOH . 
D 4 HOH A 15 388 15 HOH HOH . 
D 4 HOH A 16 389 16 HOH HOH . 
D 4 HOH A 17 390 17 HOH HOH . 
D 4 HOH A 18 391 18 HOH HOH . 
D 4 HOH A 19 392 19 HOH HOH . 
D 4 HOH A 20 393 20 HOH HOH . 
D 4 HOH A 21 394 21 HOH HOH . 
D 4 HOH A 22 395 22 HOH HOH . 
D 4 HOH A 23 396 23 HOH HOH . 
D 4 HOH A 24 397 24 HOH HOH . 
D 4 HOH A 25 398 25 HOH HOH . 
D 4 HOH A 26 399 26 HOH HOH . 
D 4 HOH A 27 400 27 HOH HOH . 
D 4 HOH A 28 401 29 HOH HOH . 
D 4 HOH A 29 402 30 HOH HOH . 
D 4 HOH A 30 403 31 HOH HOH . 
D 4 HOH A 31 404 32 HOH HOH . 
D 4 HOH A 32 405 33 HOH HOH . 
D 4 HOH A 33 406 34 HOH HOH . 
D 4 HOH A 34 407 35 HOH HOH . 
D 4 HOH A 35 408 36 HOH HOH . 
D 4 HOH A 36 409 37 HOH HOH . 
D 4 HOH A 37 410 38 HOH HOH . 
D 4 HOH A 38 411 39 HOH HOH . 
D 4 HOH A 39 412 40 HOH HOH . 
D 4 HOH A 40 413 41 HOH HOH . 
D 4 HOH A 41 414 42 HOH HOH . 
D 4 HOH A 42 415 43 HOH HOH . 
D 4 HOH A 43 416 44 HOH HOH . 
D 4 HOH A 44 417 45 HOH HOH . 
D 4 HOH A 45 418 46 HOH HOH . 
D 4 HOH A 46 419 47 HOH HOH . 
D 4 HOH A 47 420 48 HOH HOH . 
D 4 HOH A 48 421 49 HOH HOH . 
D 4 HOH A 49 422 50 HOH HOH . 
D 4 HOH A 50 423 51 HOH HOH . 
D 4 HOH A 51 424 52 HOH HOH . 
D 4 HOH A 52 425 53 HOH HOH . 
D 4 HOH A 53 426 54 HOH HOH . 
D 4 HOH A 54 427 55 HOH HOH . 
D 4 HOH A 55 428 56 HOH HOH . 
D 4 HOH A 56 429 57 HOH HOH . 
D 4 HOH A 57 430 58 HOH HOH . 
D 4 HOH A 58 431 59 HOH HOH . 
D 4 HOH A 59 432 60 HOH HOH . 
D 4 HOH A 60 433 61 HOH HOH . 
D 4 HOH A 61 434 62 HOH HOH . 
D 4 HOH A 62 435 63 HOH HOH . 
D 4 HOH A 63 436 64 HOH HOH . 
D 4 HOH A 64 437 65 HOH HOH . 
D 4 HOH A 65 438 66 HOH HOH . 
D 4 HOH A 66 439 67 HOH HOH . 
D 4 HOH A 67 440 68 HOH HOH . 
D 4 HOH A 68 441 69 HOH HOH . 
D 4 HOH A 69 442 70 HOH HOH . 
D 4 HOH A 70 443 71 HOH HOH . 
D 4 HOH A 71 444 72 HOH HOH . 
D 4 HOH A 72 445 73 HOH HOH . 
D 4 HOH A 73 446 74 HOH HOH . 
D 4 HOH A 74 447 76 HOH HOH . 
D 4 HOH A 75 448 77 HOH HOH . 
D 4 HOH A 76 449 78 HOH HOH . 
D 4 HOH A 77 450 80 HOH HOH . 
D 4 HOH A 78 451 81 HOH HOH . 
D 4 HOH A 79 452 82 HOH HOH . 
D 4 HOH A 80 453 83 HOH HOH . 
D 4 HOH A 81 454 84 HOH HOH . 
D 4 HOH A 82 455 85 HOH HOH . 
D 4 HOH A 83 456 86 HOH HOH . 
D 4 HOH A 84 457 87 HOH HOH . 
D 4 HOH A 85 458 88 HOH HOH . 
D 4 HOH A 86 459 89 HOH HOH . 
D 4 HOH A 87 460 90 HOH HOH . 
D 4 HOH A 88 461 91 HOH HOH . 
D 4 HOH A 89 462 92 HOH HOH . 
D 4 HOH A 90 463 93 HOH HOH . 
D 4 HOH A 91 464 94 HOH HOH . 
D 4 HOH A 92 465 95 HOH HOH . 
D 4 HOH A 93 466 96 HOH HOH . 
D 4 HOH A 94 467 97 HOH HOH . 
D 4 HOH A 95 468 98 HOH HOH . 
D 4 HOH A 96 469 99 HOH HOH . 
D 4 HOH A 97 470 100 HOH HOH . 
D 4 HOH A 98 471 102 HOH HOH . 
D 4 HOH A 99 472 103 HOH HOH . 
D 4 HOH A 100 473 104 HOH HOH . 
D 4 HOH A 101 474 105 HOH HOH . 
D 4 HOH A 102 475 106 HOH HOH . 
D 4 HOH A 103 476 107 HOH HOH . 
D 4 HOH A 104 477 108 HOH HOH . 
D 4 HOH A 105 478 109 HOH HOH . 
D 4 HOH A 106 479 110 HOH HOH . 
D 4 HOH A 107 480 111 HOH HOH . 
D 4 HOH A 108 481 112 HOH HOH . 
D 4 HOH A 109 482 113 HOH HOH . 
D 4 HOH A 110 483 114 HOH HOH . 
D 4 HOH A 111 484 115 HOH HOH . 
D 4 HOH A 112 485 116 HOH HOH . 
D 4 HOH A 113 486 117 HOH HOH . 
D 4 HOH A 114 487 119 HOH HOH . 
D 4 HOH A 115 488 121 HOH HOH . 
D 4 HOH A 116 489 122 HOH HOH . 
D 4 HOH A 117 490 123 HOH HOH . 
D 4 HOH A 118 491 124 HOH HOH . 
D 4 HOH A 119 492 125 HOH HOH . 
D 4 HOH A 120 493 126 HOH HOH . 
D 4 HOH A 121 494 127 HOH HOH . 
D 4 HOH A 122 495 128 HOH HOH . 
D 4 HOH A 123 496 129 HOH HOH . 
D 4 HOH A 124 497 130 HOH HOH . 
D 4 HOH A 125 498 131 HOH HOH . 
D 4 HOH A 126 499 132 HOH HOH . 
D 4 HOH A 127 502 133 HOH HOH . 
D 4 HOH A 128 503 135 HOH HOH . 
D 4 HOH A 129 504 136 HOH HOH . 
D 4 HOH A 130 505 137 HOH HOH . 
D 4 HOH A 131 506 138 HOH HOH . 
D 4 HOH A 132 507 139 HOH HOH . 
D 4 HOH A 133 508 140 HOH HOH . 
D 4 HOH A 134 509 141 HOH HOH . 
D 4 HOH A 135 510 142 HOH HOH . 
D 4 HOH A 136 511 143 HOH HOH . 
D 4 HOH A 137 512 144 HOH HOH . 
D 4 HOH A 138 513 145 HOH HOH . 
D 4 HOH A 139 514 146 HOH HOH . 
D 4 HOH A 140 515 148 HOH HOH . 
D 4 HOH A 141 516 149 HOH HOH . 
D 4 HOH A 142 517 150 HOH HOH . 
D 4 HOH A 143 518 151 HOH HOH . 
D 4 HOH A 144 519 152 HOH HOH . 
D 4 HOH A 145 520 153 HOH HOH . 
D 4 HOH A 146 521 154 HOH HOH . 
D 4 HOH A 147 522 155 HOH HOH . 
D 4 HOH A 148 523 156 HOH HOH . 
D 4 HOH A 149 524 157 HOH HOH . 
D 4 HOH A 150 525 158 HOH HOH . 
D 4 HOH A 151 526 159 HOH HOH . 
D 4 HOH A 152 527 160 HOH HOH . 
D 4 HOH A 153 528 161 HOH HOH . 
D 4 HOH A 154 529 162 HOH HOH . 
D 4 HOH A 155 530 164 HOH HOH . 
D 4 HOH A 156 531 165 HOH HOH . 
D 4 HOH A 157 532 166 HOH HOH . 
D 4 HOH A 158 533 167 HOH HOH . 
D 4 HOH A 159 534 168 HOH HOH . 
D 4 HOH A 160 535 169 HOH HOH . 
D 4 HOH A 161 536 170 HOH HOH . 
D 4 HOH A 162 537 172 HOH HOH . 
D 4 HOH A 163 538 173 HOH HOH . 
D 4 HOH A 164 539 174 HOH HOH . 
D 4 HOH A 165 540 175 HOH HOH . 
D 4 HOH A 166 541 176 HOH HOH . 
D 4 HOH A 167 542 177 HOH HOH . 
D 4 HOH A 168 543 178 HOH HOH . 
D 4 HOH A 169 544 180 HOH HOH . 
D 4 HOH A 170 545 181 HOH HOH . 
D 4 HOH A 171 546 182 HOH HOH . 
D 4 HOH A 172 547 183 HOH HOH . 
D 4 HOH A 173 548 184 HOH HOH . 
D 4 HOH A 174 549 186 HOH HOH . 
D 4 HOH A 175 550 187 HOH HOH . 
D 4 HOH A 176 551 188 HOH HOH . 
D 4 HOH A 177 552 189 HOH HOH . 
D 4 HOH A 178 553 190 HOH HOH . 
D 4 HOH A 179 554 191 HOH HOH . 
D 4 HOH A 180 555 192 HOH HOH . 
D 4 HOH A 181 556 193 HOH HOH . 
D 4 HOH A 182 557 194 HOH HOH . 
D 4 HOH A 183 558 195 HOH HOH . 
D 4 HOH A 184 559 196 HOH HOH . 
D 4 HOH A 185 560 197 HOH HOH . 
D 4 HOH A 186 561 198 HOH HOH . 
D 4 HOH A 187 562 199 HOH HOH . 
D 4 HOH A 188 563 200 HOH HOH . 
D 4 HOH A 189 564 201 HOH HOH . 
D 4 HOH A 190 565 202 HOH HOH . 
D 4 HOH A 191 566 203 HOH HOH . 
D 4 HOH A 192 567 204 HOH HOH . 
D 4 HOH A 193 568 206 HOH HOH . 
D 4 HOH A 194 569 208 HOH HOH . 
D 4 HOH A 195 570 209 HOH HOH . 
D 4 HOH A 196 571 212 HOH HOH . 
D 4 HOH A 197 572 213 HOH HOH . 
D 4 HOH A 198 573 214 HOH HOH . 
D 4 HOH A 199 574 215 HOH HOH . 
D 4 HOH A 200 575 216 HOH HOH . 
D 4 HOH A 201 576 217 HOH HOH . 
D 4 HOH A 202 577 218 HOH HOH . 
D 4 HOH A 203 578 219 HOH HOH . 
D 4 HOH A 204 579 220 HOH HOH . 
D 4 HOH A 205 580 221 HOH HOH . 
D 4 HOH A 206 581 222 HOH HOH . 
D 4 HOH A 207 582 223 HOH HOH . 
D 4 HOH A 208 583 224 HOH HOH . 
D 4 HOH A 209 584 226 HOH HOH . 
D 4 HOH A 210 585 227 HOH HOH . 
D 4 HOH A 211 586 228 HOH HOH . 
D 4 HOH A 212 587 229 HOH HOH . 
D 4 HOH A 213 588 230 HOH HOH . 
D 4 HOH A 214 589 231 HOH HOH . 
D 4 HOH A 215 590 232 HOH HOH . 
D 4 HOH A 216 591 233 HOH HOH . 
D 4 HOH A 217 592 234 HOH HOH . 
D 4 HOH A 218 593 236 HOH HOH . 
D 4 HOH A 219 594 237 HOH HOH . 
D 4 HOH A 220 595 238 HOH HOH . 
D 4 HOH A 221 596 239 HOH HOH . 
D 4 HOH A 222 597 241 HOH HOH . 
D 4 HOH A 223 598 242 HOH HOH . 
D 4 HOH A 224 599 243 HOH HOH . 
D 4 HOH A 225 600 244 HOH HOH . 
D 4 HOH A 226 601 245 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NI 
_atom_site.label_atom_id         NI 
_atom_site.label_comp_id         NI 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -52.968 
_atom_site.Cartn_y               39.654 
_atom_site.Cartn_z               5.397 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        17.86 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NI 
_atom_site.auth_comp_id          NI 
_atom_site.auth_seq_id           500 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           316 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#