data_3OPY
#
_model_server_result.job_id            0Guj0ptMeNBH0jz-gdp5RA 
_model_server_result.datetime_utc      '2024-11-25 02:52:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3opy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"KB","auth_seq_id":942}' 
#
_entry.id    3OPY 
#
_exptl.entry_id    3OPY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          92.85 
_cell.angle_gamma         90 
_cell.entry_id            3OPY 
_cell.length_a            161.658 
_cell.length_b            188.303 
_cell.length_c            231.56 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3OPY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 Z N N 
? 5 MA N N 
? 5 YA N N 
? 5 KB N N 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     3OPY 
_atom_sites.fract_transf_matrix[1][1]    0.006186 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000308 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005311 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004324 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 4 SO4 A 1 990 1 SO4 SO4 . 
N 4 SO4 A 1 991 2 SO4 SO4 . 
O 4 SO4 A 1 992 5 SO4 SO4 . 
P 4 SO4 A 1 993 6 SO4 SO4 . 
Q 4 SO4 A 1 994 7 SO4 SO4 . 
R 4 SO4 A 1 995 8 SO4 SO4 . 
S 4 SO4 A 1 996 14 SO4 SO4 . 
T 4 SO4 A 1 997 33 SO4 SO4 . 
U 4 SO4 A 1 998 36 SO4 SO4 . 
V 4 SO4 A 1 999 46 SO4 SO4 . 
W 4 SO4 A 1 1000 47 SO4 SO4 . 
X 4 SO4 A 1 1001 48 SO4 SO4 . 
Y 4 SO4 A 1 1002 49 SO4 SO4 . 
Z 5 ATP B 1 942 3 ATP ATP . 
AA 4 SO4 B 1 943 4 SO4 SO4 . 
BA 4 SO4 B 1 944 13 SO4 SO4 . 
CA 4 SO4 C 1 990 12 SO4 SO4 . 
DA 4 SO4 C 1 991 16 SO4 SO4 . 
EA 4 SO4 C 1 992 20 SO4 SO4 . 
FA 4 SO4 C 1 993 24 SO4 SO4 . 
GA 4 SO4 C 1 994 41 SO4 SO4 . 
HA 4 SO4 C 1 995 42 SO4 SO4 . 
IA 4 SO4 C 1 996 50 SO4 SO4 . 
JA 4 SO4 C 1 997 51 SO4 SO4 . 
KA 4 SO4 C 1 998 52 SO4 SO4 . 
LA 4 SO4 C 1 999 53 SO4 SO4 . 
MA 5 ATP D 1 942 2 ATP ATP . 
NA 4 SO4 D 1 943 15 SO4 SO4 . 
OA 4 SO4 D 1 944 19 SO4 SO4 . 
PA 4 SO4 D 1 945 21 SO4 SO4 . 
QA 4 SO4 E 1 990 9 SO4 SO4 . 
RA 4 SO4 E 1 991 29 SO4 SO4 . 
SA 4 SO4 E 1 992 32 SO4 SO4 . 
TA 4 SO4 E 1 993 37 SO4 SO4 . 
UA 4 SO4 E 1 994 44 SO4 SO4 . 
VA 4 SO4 E 1 995 54 SO4 SO4 . 
WA 4 SO4 E 1 996 55 SO4 SO4 . 
XA 4 SO4 E 1 997 56 SO4 SO4 . 
YA 5 ATP F 1 942 1 ATP ATP . 
ZA 4 SO4 F 1 943 25 SO4 SO4 . 
AB 4 SO4 F 1 944 35 SO4 SO4 . 
BB 4 SO4 F 1 945 43 SO4 SO4 . 
CB 4 SO4 G 1 990 17 SO4 SO4 . 
DB 4 SO4 G 1 991 22 SO4 SO4 . 
EB 4 SO4 G 1 992 26 SO4 SO4 . 
FB 4 SO4 G 1 993 39 SO4 SO4 . 
GB 4 SO4 G 1 994 40 SO4 SO4 . 
HB 4 SO4 G 1 995 58 SO4 SO4 . 
IB 4 SO4 G 1 996 59 SO4 SO4 . 
JB 4 SO4 G 1 997 60 SO4 SO4 . 
KB 5 ATP H 1 942 4 ATP ATP . 
LB 4 SO4 H 1 943 23 SO4 SO4 . 
MB 4 SO4 H 1 944 28 SO4 SO4 . 
NB 4 SO4 H 1 945 30 SO4 SO4 . 
OB 4 SO4 H 1 946 45 SO4 SO4 . 
PB 4 SO4 I 1 352 10 SO4 SO4 . 
QB 4 SO4 I 1 353 11 SO4 SO4 . 
RB 4 SO4 I 1 354 62 SO4 SO4 . 
SB 4 SO4 I 1 355 63 SO4 SO4 . 
TB 4 SO4 I 1 356 64 SO4 SO4 . 
UB 4 SO4 J 1 352 18 SO4 SO4 . 
VB 4 SO4 J 1 353 34 SO4 SO4 . 
WB 4 SO4 J 1 354 65 SO4 SO4 . 
XB 4 SO4 K 1 352 31 SO4 SO4 . 
YB 4 SO4 K 1 353 38 SO4 SO4 . 
ZB 4 SO4 K 1 354 69 SO4 SO4 . 
AC 4 SO4 L 1 352 71 SO4 SO4 . 
BC 4 SO4 L 1 353 72 SO4 SO4 . 
CC 4 SO4 L 1 354 73 SO4 SO4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . KB 5 -15.699 54.812 128.844 1 104.3 ? PG ATP 942 H 1 
HETATM 2 O O1G ATP . . . KB 5 -16.485 54.778 127.493 1 103.12 ? O1G ATP 942 H 1 
HETATM 3 O O2G ATP . . . KB 5 -14.161 54.896 128.617 1 102.55 ? O2G ATP 942 H 1 
HETATM 4 O O3G ATP . . . KB 5 -16.049 56.135 129.51 1 102.9 ? O3G ATP 942 H 1 
HETATM 5 P PB ATP . . . KB 5 -15.991 52.206 130.384 1 84.43 ? PB ATP 942 H 1 
HETATM 6 O O1B ATP . . . KB 5 -16.66 52.094 131.801 1 84.63 ? O1B ATP 942 H 1 
HETATM 7 O O2B ATP . . . KB 5 -16.667 51.264 129.321 1 84.07 ? O2B ATP 942 H 1 
HETATM 8 O O3B ATP . . . KB 5 -16.176 53.746 129.988 1 94.86 ? O3B ATP 942 H 1 
HETATM 9 P PA ATP . . . KB 5 -13.287 51.326 129.705 1 73.11 ? PA ATP 942 H 1 
HETATM 10 O O1A ATP . . . KB 5 -12.871 52.457 128.753 1 72.62 ? O1A ATP 942 H 1 
HETATM 11 O O2A ATP . . . KB 5 -11.996 50.938 130.433 1 74.04 ? O2A ATP 942 H 1 
HETATM 12 O O3A ATP . . . KB 5 -14.452 51.841 130.642 1 81.21 ? O3A ATP 942 H 1 
HETATM 13 O O5' ATP . . . KB 5 -13.762 49.947 129.024 1 72.87 ? O5' ATP 942 H 1 
HETATM 14 C C5' ATP . . . KB 5 -13.696 48.685 129.737 1 70.56 ? C5' ATP 942 H 1 
HETATM 15 C C4' ATP . . . KB 5 -14.056 47.444 128.853 1 70.12 ? C4' ATP 942 H 1 
HETATM 16 O O4' ATP . . . KB 5 -15.432 47.408 128.378 1 69.67 ? O4' ATP 942 H 1 
HETATM 17 C C3' ATP . . . KB 5 -13.195 47.116 127.644 1 69.4 ? C3' ATP 942 H 1 
HETATM 18 O O3' ATP . . . KB 5 -11.982 46.414 127.877 1 70.46 ? O3' ATP 942 H 1 
HETATM 19 C C2' ATP . . . KB 5 -14.142 46.31 126.794 1 69.83 ? C2' ATP 942 H 1 
HETATM 20 O O2' ATP . . . KB 5 -14.201 44.996 127.323 1 69.84 ? O2' ATP 942 H 1 
HETATM 21 C C1' ATP . . . KB 5 -15.488 46.963 127.016 1 69.1 ? C1' ATP 942 H 1 
HETATM 22 N N9 ATP . . . KB 5 -15.798 48.075 126.117 1 69.8 ? N9 ATP 942 H 1 
HETATM 23 C C8 ATP . . . KB 5 -16.02 49.395 126.48 1 69.66 ? C8 ATP 942 H 1 
HETATM 24 N N7 ATP . . . KB 5 -16.276 50.155 125.431 1 70.61 ? N7 ATP 942 H 1 
HETATM 25 C C5 ATP . . . KB 5 -16.241 49.329 124.295 1 69.43 ? C5 ATP 942 H 1 
HETATM 26 C C6 ATP . . . KB 5 -16.438 49.557 122.858 1 70.04 ? C6 ATP 942 H 1 
HETATM 27 N N6 ATP . . . KB 5 -16.726 50.799 122.262 1 69.67 ? N6 ATP 942 H 1 
HETATM 28 N N1 ATP . . . KB 5 -16.324 48.454 122.017 1 69.88 ? N1 ATP 942 H 1 
HETATM 29 C C2 ATP . . . KB 5 -16.011 47.209 122.538 1 69.49 ? C2 ATP 942 H 1 
HETATM 30 N N3 ATP . . . KB 5 -15.818 46.896 123.847 1 70.04 ? N3 ATP 942 H 1 
HETATM 31 C C4 ATP . . . KB 5 -15.937 47.996 124.701 1 69.59 ? C4 ATP 942 H 1 
#
_model_server_stats.io_time_ms              94 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    292 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           31 
#