data_3OPY # _model_server_result.job_id tjVS7aDhoQ06cj61KXhJBQ _model_server_result.datetime_utc '2024-11-25 02:38:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3opy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":996}' # _entry.id 3OPY # _exptl.entry_id 3OPY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 65 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.85 _cell.angle_gamma 90 _cell.entry_id 3OPY _cell.length_a 161.658 _cell.length_b 188.303 _cell.length_c 231.56 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OPY _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 M N N ? 4 N N N ? 4 O N N ? 4 P N N ? 4 Q N N ? 4 R N N ? 4 S N N ? 4 T N N ? 4 U N N ? 4 V N N ? 4 W N N ? 4 X N N ? 4 Y N N ? 4 AA N N ? 4 BA N N ? 4 CA N N ? 4 DA N N ? 4 EA N N ? 4 FA N N ? 4 GA N N ? 4 HA N N ? 4 IA N N ? 4 JA N N ? 4 KA N N ? 4 LA N N ? 4 NA N N ? 4 OA N N ? 4 PA N N ? 4 QA N N ? 4 RA N N ? 4 SA N N ? 4 TA N N ? 4 UA N N ? 4 VA N N ? 4 WA N N ? 4 XA N N ? 4 ZA N N ? 4 AB N N ? 4 BB N N ? 4 CB N N ? 4 DB N N ? 4 EB N N ? 4 FB N N ? 4 GB N N ? 4 HB N N ? 4 IB N N ? 4 JB N N ? 4 LB N N ? 4 MB N N ? 4 NB N N ? 4 OB N N ? 4 PB N N ? 4 QB N N ? 4 RB N N ? 4 SB N N ? 4 TB N N ? 4 UB N N ? 4 VB N N ? 4 WB N N ? 4 XB N N ? 4 YB N N ? 4 ZB N N ? 4 AC N N ? 4 BC N N ? 4 CC N N # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 337 n n S O2 SO4 doub 338 n n S O3 SO4 sing 339 n n S O4 SO4 sing 340 n n # _atom_sites.entry_id 3OPY _atom_sites.fract_transf_matrix[1][1] 0.006186 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000308 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005311 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004324 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 4 SO4 A 1 990 1 SO4 SO4 . N 4 SO4 A 1 991 2 SO4 SO4 . O 4 SO4 A 1 992 5 SO4 SO4 . P 4 SO4 A 1 993 6 SO4 SO4 . Q 4 SO4 A 1 994 7 SO4 SO4 . R 4 SO4 A 1 995 8 SO4 SO4 . S 4 SO4 A 1 996 14 SO4 SO4 . T 4 SO4 A 1 997 33 SO4 SO4 . U 4 SO4 A 1 998 36 SO4 SO4 . V 4 SO4 A 1 999 46 SO4 SO4 . W 4 SO4 A 1 1000 47 SO4 SO4 . X 4 SO4 A 1 1001 48 SO4 SO4 . Y 4 SO4 A 1 1002 49 SO4 SO4 . Z 5 ATP B 1 942 3 ATP ATP . AA 4 SO4 B 1 943 4 SO4 SO4 . BA 4 SO4 B 1 944 13 SO4 SO4 . CA 4 SO4 C 1 990 12 SO4 SO4 . DA 4 SO4 C 1 991 16 SO4 SO4 . EA 4 SO4 C 1 992 20 SO4 SO4 . FA 4 SO4 C 1 993 24 SO4 SO4 . GA 4 SO4 C 1 994 41 SO4 SO4 . HA 4 SO4 C 1 995 42 SO4 SO4 . IA 4 SO4 C 1 996 50 SO4 SO4 . JA 4 SO4 C 1 997 51 SO4 SO4 . KA 4 SO4 C 1 998 52 SO4 SO4 . LA 4 SO4 C 1 999 53 SO4 SO4 . MA 5 ATP D 1 942 2 ATP ATP . NA 4 SO4 D 1 943 15 SO4 SO4 . OA 4 SO4 D 1 944 19 SO4 SO4 . PA 4 SO4 D 1 945 21 SO4 SO4 . QA 4 SO4 E 1 990 9 SO4 SO4 . RA 4 SO4 E 1 991 29 SO4 SO4 . SA 4 SO4 E 1 992 32 SO4 SO4 . TA 4 SO4 E 1 993 37 SO4 SO4 . UA 4 SO4 E 1 994 44 SO4 SO4 . VA 4 SO4 E 1 995 54 SO4 SO4 . WA 4 SO4 E 1 996 55 SO4 SO4 . XA 4 SO4 E 1 997 56 SO4 SO4 . YA 5 ATP F 1 942 1 ATP ATP . ZA 4 SO4 F 1 943 25 SO4 SO4 . AB 4 SO4 F 1 944 35 SO4 SO4 . BB 4 SO4 F 1 945 43 SO4 SO4 . CB 4 SO4 G 1 990 17 SO4 SO4 . DB 4 SO4 G 1 991 22 SO4 SO4 . EB 4 SO4 G 1 992 26 SO4 SO4 . FB 4 SO4 G 1 993 39 SO4 SO4 . GB 4 SO4 G 1 994 40 SO4 SO4 . HB 4 SO4 G 1 995 58 SO4 SO4 . IB 4 SO4 G 1 996 59 SO4 SO4 . JB 4 SO4 G 1 997 60 SO4 SO4 . KB 5 ATP H 1 942 4 ATP ATP . LB 4 SO4 H 1 943 23 SO4 SO4 . MB 4 SO4 H 1 944 28 SO4 SO4 . NB 4 SO4 H 1 945 30 SO4 SO4 . OB 4 SO4 H 1 946 45 SO4 SO4 . PB 4 SO4 I 1 352 10 SO4 SO4 . QB 4 SO4 I 1 353 11 SO4 SO4 . RB 4 SO4 I 1 354 62 SO4 SO4 . SB 4 SO4 I 1 355 63 SO4 SO4 . TB 4 SO4 I 1 356 64 SO4 SO4 . UB 4 SO4 J 1 352 18 SO4 SO4 . VB 4 SO4 J 1 353 34 SO4 SO4 . WB 4 SO4 J 1 354 65 SO4 SO4 . XB 4 SO4 K 1 352 31 SO4 SO4 . YB 4 SO4 K 1 353 38 SO4 SO4 . ZB 4 SO4 K 1 354 69 SO4 SO4 . AC 4 SO4 L 1 352 71 SO4 SO4 . BC 4 SO4 L 1 353 72 SO4 SO4 . CC 4 SO4 L 1 354 73 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . S 4 -8.237 1 9.838 1 45.4 ? S SO4 996 A 1 HETATM 2 O O1 SO4 . . . S 4 -8.658 1.31 8.445 1 50.01 ? O1 SO4 996 A 1 HETATM 3 O O2 SO4 . . . S 4 -9.086 -0.124 10.334 1 50.74 ? O2 SO4 996 A 1 HETATM 4 O O3 SO4 . . . S 4 -6.86 0.529 9.833 1 53.29 ? O3 SO4 996 A 1 HETATM 5 O O4 SO4 . . . S 4 -8.351 2.193 10.717 1 48.14 ? O4 SO4 996 A 1 # _model_server_stats.io_time_ms 122 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 246 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 5 #