data_3OQ1
#
_model_server_result.job_id            ERmKVhLgOReDyZIqoJ5aXQ 
_model_server_result.datetime_utc      '2024-12-21 18:28:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3oq1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1}' 
#
_entry.id    3OQ1 
#
_exptl.entry_id    3OQ1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          92.4 
_cell.angle_gamma         90 
_cell.entry_id            3OQ1 
_cell.length_a            56.303 
_cell.length_b            153.398 
_cell.length_c            73.593 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3OQ1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,M,N 1 1 
C,D,I,J,K,L,O,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 J N N 
? 2 L N N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 280 n n 
PA O2A NAP sing 281 n n 
PA O5B NAP sing 282 n n 
PA O3 NAP sing 283 n n 
O2A HOA2 NAP sing 284 n n 
O5B C5B NAP sing 285 n n 
C5B C4B NAP sing 286 n n 
C5B H51A NAP sing 287 n n 
C5B H52A NAP sing 288 n n 
C4B O4B NAP sing 289 n n 
C4B C3B NAP sing 290 n n 
C4B H4B NAP sing 291 n n 
O4B C1B NAP sing 292 n n 
C3B O3B NAP sing 293 n n 
C3B C2B NAP sing 294 n n 
C3B H3B NAP sing 295 n n 
O3B HO3A NAP sing 296 n n 
C2B O2B NAP sing 297 n n 
C2B C1B NAP sing 298 n n 
C2B H2B NAP sing 299 n n 
O2B P2B NAP sing 300 n n 
C1B N9A NAP sing 301 n n 
C1B H1B NAP sing 302 n n 
N9A C8A NAP sing 303 n y 
N9A C4A NAP sing 304 n y 
C8A N7A NAP doub 305 n y 
C8A H8A NAP sing 306 n n 
N7A C5A NAP sing 307 n y 
C5A C6A NAP sing 308 n y 
C5A C4A NAP doub 309 n y 
C6A N6A NAP sing 310 n n 
C6A N1A NAP doub 311 n y 
N6A H61A NAP sing 312 n n 
N6A H62A NAP sing 313 n n 
N1A C2A NAP sing 314 n y 
C2A N3A NAP doub 315 n y 
C2A H2A NAP sing 316 n n 
N3A C4A NAP sing 317 n y 
O3 PN NAP sing 318 n n 
PN O1N NAP doub 319 n n 
PN O2N NAP sing 320 n n 
PN O5D NAP sing 321 n n 
O5D C5D NAP sing 322 n n 
C5D C4D NAP sing 323 n n 
C5D H51N NAP sing 324 n n 
C5D H52N NAP sing 325 n n 
C4D O4D NAP sing 326 n n 
C4D C3D NAP sing 327 n n 
C4D H4D NAP sing 328 n n 
O4D C1D NAP sing 329 n n 
C3D O3D NAP sing 330 n n 
C3D C2D NAP sing 331 n n 
C3D H3D NAP sing 332 n n 
O3D HO3N NAP sing 333 n n 
C2D O2D NAP sing 334 n n 
C2D C1D NAP sing 335 n n 
C2D H2D NAP sing 336 n n 
O2D HO2N NAP sing 337 n n 
C1D N1N NAP sing 338 n n 
C1D H1D NAP sing 339 n n 
N1N C2N NAP sing 340 n y 
N1N C6N NAP doub 341 n y 
C2N C3N NAP doub 342 n y 
C2N H2N NAP sing 343 n n 
C3N C7N NAP sing 344 n n 
C3N C4N NAP sing 345 n y 
C7N O7N NAP doub 346 n n 
C7N N7N NAP sing 347 n n 
N7N H71N NAP sing 348 n n 
N7N H72N NAP sing 349 n n 
C4N C5N NAP doub 350 n y 
C4N H4N NAP sing 351 n n 
C5N C6N NAP sing 352 n y 
C5N H5N NAP sing 353 n n 
C6N H6N NAP sing 354 n n 
P2B O1X NAP doub 355 n n 
P2B O2X NAP sing 356 n n 
P2B O3X NAP sing 357 n n 
O2X HOP2 NAP sing 358 n n 
O3X HOP3 NAP sing 359 n n 
#
_atom_sites.entry_id                     3OQ1 
_atom_sites.fract_transf_matrix[1][1]    0.017761 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000744 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006519 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.0136 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NAP A 1 1 1 NAP NAP . 
F 3 3OQ A 1 293 1 3OQ 3OQ . 
G 2 NAP B 1 2 2 NAP NAP . 
H 3 3OQ B 1 293 2 3OQ 3OQ . 
I 3 3OQ C 1 293 3 3OQ 3OQ . 
J 2 NAP C 1 3 3 NAP NAP . 
K 3 3OQ D 1 293 4 3OQ 3OQ . 
L 2 NAP D 1 4 4 NAP NAP . 
M 4 HOH A 1 294 14 HOH HOH . 
M 4 HOH A 2 295 27 HOH HOH . 
N 4 HOH B 1 1 1 HOH HOH . 
N 4 HOH B 2 4 4 HOH HOH . 
N 4 HOH B 3 294 2 HOH HOH . 
N 4 HOH B 4 295 9 HOH HOH . 
N 4 HOH B 5 296 24 HOH HOH . 
N 4 HOH B 6 297 25 HOH HOH . 
N 4 HOH B 7 298 26 HOH HOH . 
N 4 HOH B 8 299 28 HOH HOH . 
N 4 HOH B 9 300 29 HOH HOH . 
N 4 HOH B 10 301 31 HOH HOH . 
O 4 HOH C 1 5 5 HOH HOH . 
O 4 HOH C 2 6 6 HOH HOH . 
O 4 HOH C 3 294 3 HOH HOH . 
O 4 HOH C 4 295 12 HOH HOH . 
O 4 HOH C 5 296 15 HOH HOH . 
O 4 HOH C 6 297 18 HOH HOH . 
O 4 HOH C 7 298 20 HOH HOH . 
O 4 HOH C 8 299 21 HOH HOH . 
O 4 HOH C 9 300 22 HOH HOH . 
O 4 HOH C 10 301 23 HOH HOH . 
P 4 HOH D 1 294 7 HOH HOH . 
P 4 HOH D 2 295 8 HOH HOH . 
P 4 HOH D 3 296 10 HOH HOH . 
P 4 HOH D 4 297 11 HOH HOH . 
P 4 HOH D 5 298 13 HOH HOH . 
P 4 HOH D 6 299 16 HOH HOH . 
P 4 HOH D 7 300 17 HOH HOH . 
P 4 HOH D 8 301 19 HOH HOH . 
P 4 HOH D 9 302 30 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . E 2 37.46 21.163 -10.93 1 72.1 ? PA NAP 1 A 1 
HETATM 2 O O1A NAP . . . E 2 38.607 20.38 -11.464 1 73.01 ? O1A NAP 1 A 1 
HETATM 3 O O2A NAP . . . E 2 37.97 22.291 -10.122 1 70.8 ? O2A NAP 1 A 1 
HETATM 4 O O5B NAP . . . E 2 36.533 21.755 -12.101 1 71.79 ? O5B NAP 1 A 1 
HETATM 5 C C5B NAP . . . E 2 35.695 22.833 -11.772 1 71.96 ? C5B NAP 1 A 1 
HETATM 6 C C4B NAP . . . E 2 34.975 23.29 -13.02 1 72.46 ? C4B NAP 1 A 1 
HETATM 7 O O4B NAP . . . E 2 34.059 24.291 -12.644 1 71.94 ? O4B NAP 1 A 1 
HETATM 8 C C3B NAP . . . E 2 35.936 23.898 -14.027 1 72.88 ? C3B NAP 1 A 1 
HETATM 9 O O3B NAP . . . E 2 35.546 23.5 -15.32 1 72.32 ? O3B NAP 1 A 1 
HETATM 10 C C2B NAP . . . E 2 35.73 25.383 -13.855 1 73.38 ? C2B NAP 1 A 1 
HETATM 11 O O2B NAP . . . E 2 35.893 26.066 -15.071 1 74.31 ? O2B NAP 1 A 1 
HETATM 12 C C1B NAP . . . E 2 34.287 25.441 -13.411 1 72.24 ? C1B NAP 1 A 1 
HETATM 13 N N9A NAP . . . E 2 34.006 26.654 -12.647 1 71.26 ? N9A NAP 1 A 1 
HETATM 14 C C8A NAP . . . E 2 34.717 27.205 -11.612 1 71.17 ? C8A NAP 1 A 1 
HETATM 15 N N7A NAP . . . E 2 34.058 28.332 -11.233 1 71.6 ? N7A NAP 1 A 1 
HETATM 16 C C5A NAP . . . E 2 32.96 28.501 -12.018 1 70.38 ? C5A NAP 1 A 1 
HETATM 17 C C6A NAP . . . E 2 31.949 29.462 -12.069 1 70.2 ? C6A NAP 1 A 1 
HETATM 18 N N6A NAP . . . E 2 31.951 30.499 -11.217 1 69.41 ? N6A NAP 1 A 1 
HETATM 19 N N1A NAP . . . E 2 30.941 29.33 -13.015 1 68.13 ? N1A NAP 1 A 1 
HETATM 20 C C2A NAP . . . E 2 30.92 28.27 -13.891 1 69.18 ? C2A NAP 1 A 1 
HETATM 21 N N3A NAP . . . E 2 31.922 27.326 -13.835 1 70.48 ? N3A NAP 1 A 1 
HETATM 22 C C4A NAP . . . E 2 32.918 27.442 -12.914 1 70.57 ? C4A NAP 1 A 1 
HETATM 23 O O3 NAP . . . E 2 36.377 20.176 -10.23 1 69.51 ? O3 NAP 1 A 1 
HETATM 24 P PN NAP . . . E 2 36.045 18.6 -10.373 1 69.36 ? PN NAP 1 A 1 
HETATM 25 O O1N NAP . . . E 2 35.811 18.167 -11.774 1 68.6 ? O1N NAP 1 A 1 
HETATM 26 O O2N NAP . . . E 2 36.996 17.849 -9.505 1 68.75 ? O2N NAP 1 A 1 
HETATM 27 O O5D NAP . . . E 2 34.609 18.531 -9.684 1 67.57 ? O5D NAP 1 A 1 
HETATM 28 C C5D NAP . . . E 2 33.439 18.57 -10.45 1 66.67 ? C5D NAP 1 A 1 
HETATM 29 C C4D NAP . . . E 2 32.346 18.038 -9.548 1 66.07 ? C4D NAP 1 A 1 
HETATM 30 O O4D NAP . . . E 2 32.863 16.884 -8.925 1 65.91 ? O4D NAP 1 A 1 
HETATM 31 C C3D NAP . . . E 2 31.976 19.004 -8.425 1 65.99 ? C3D NAP 1 A 1 
HETATM 32 O O3D NAP . . . E 2 30.587 18.975 -8.192 1 64.21 ? O3D NAP 1 A 1 
HETATM 33 C C2D NAP . . . E 2 32.667 18.424 -7.212 1 65.87 ? C2D NAP 1 A 1 
HETATM 34 O O2D NAP . . . E 2 31.963 18.733 -6.048 1 64.63 ? O2D NAP 1 A 1 
HETATM 35 C C1D NAP . . . E 2 32.574 16.949 -7.543 1 66.66 ? C1D NAP 1 A 1 
HETATM 36 N N1N NAP . . . E 2 33.492 16.134 -6.749 1 67 ? N1N NAP 1 A 1 
HETATM 37 C C2N NAP . . . E 2 34.776 15.978 -7.151 1 67.75 ? C2N NAP 1 A 1 
HETATM 38 C C3N NAP . . . E 2 35.637 15.194 -6.403 1 68.6 ? C3N NAP 1 A 1 
HETATM 39 C C7N NAP . . . E 2 37.091 15.418 -6.568 1 69.48 ? C7N NAP 1 A 1 
HETATM 40 O O7N NAP . . . E 2 37.93 14.868 -5.579 1 71.13 ? O7N NAP 1 A 1 
HETATM 41 N N7N NAP . . . E 2 37.515 16.123 -7.629 1 69.38 ? N7N NAP 1 A 1 
HETATM 42 C C4N NAP . . . E 2 35.19 14.572 -5.243 1 70.03 ? C4N NAP 1 A 1 
HETATM 43 C C5N NAP . . . E 2 33.868 14.745 -4.826 1 70.34 ? C5N NAP 1 A 1 
HETATM 44 C C6N NAP . . . E 2 33.025 15.528 -5.613 1 69.21 ? C6N NAP 1 A 1 
HETATM 45 P P2B NAP . . . E 2 36.49 27.556 -15.092 1 76.41 ? P2B NAP 1 A 1 
HETATM 46 O O1X NAP . . . E 2 36.929 27.75 -16.529 1 76.6 ? O1X NAP 1 A 1 
HETATM 47 O O2X NAP . . . E 2 35.388 28.519 -14.742 1 74.61 ? O2X NAP 1 A 1 
HETATM 48 O O3X NAP . . . E 2 37.681 27.75 -14.158 1 75.15 ? O3X NAP 1 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    61 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           48 
#