data_3OQF # _model_server_result.job_id jK6d-iLYERKSRJf17mfmZQ _model_server_result.datetime_utc '2024-12-30 17:01:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3oqf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":367}' # _entry.id 3OQF # _exptl.entry_id 3OQF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3OQF _cell.length_a 143.22 _cell.length_b 143.22 _cell.length_c 143.22 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OQF _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 51 A CYS 45 1_555 A SG CYS 58 A CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf2 A SG CYS 217 A CYS 206 1_555 A SG CYS 221 A CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 A SG CYS 259 A CYS 249 1_555 A SG CYS 296 A CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 B SG CYS 51 B CYS 45 1_555 B SG CYS 58 B CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf5 B SG CYS 217 B CYS 206 1_555 B SG CYS 221 B CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 B SG CYS 259 B CYS 249 1_555 B SG CYS 296 B CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 75 A ASN 67 1_555 C C1 NAG . A NAG 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.419 ? covale ? covale2 B ND2 ASN 75 B ASN 67 1_555 E C1 NAG . B NAG 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 3OQF _atom_sites.fract_transf_matrix[1][1] 0.006982 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006982 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006982 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG A 1 367 367 NAG NAG . D 3 S51 A 1 328 1 S51 S51 . E 2 NAG B 1 367 367 NAG NAG . F 3 S51 B 1 328 1 S51 S51 . G 4 HOH A 1 98 98 HOH HOH . G 4 HOH A 2 329 1 HOH HOH . G 4 HOH A 3 330 2 HOH HOH . G 4 HOH A 4 331 3 HOH HOH . G 4 HOH A 5 332 332 HOH HOH . G 4 HOH A 6 333 4 HOH HOH . G 4 HOH A 7 334 5 HOH HOH . G 4 HOH A 8 335 6 HOH HOH . G 4 HOH A 9 336 8 HOH HOH . G 4 HOH A 10 337 9 HOH HOH . G 4 HOH A 11 338 10 HOH HOH . G 4 HOH A 12 339 12 HOH HOH . G 4 HOH A 13 340 14 HOH HOH . G 4 HOH A 14 341 15 HOH HOH . G 4 HOH A 15 342 16 HOH HOH . G 4 HOH A 16 343 18 HOH HOH . G 4 HOH A 17 344 19 HOH HOH . G 4 HOH A 18 345 22 HOH HOH . G 4 HOH A 19 346 26 HOH HOH . G 4 HOH A 20 347 28 HOH HOH . G 4 HOH A 21 348 29 HOH HOH . G 4 HOH A 22 349 30 HOH HOH . G 4 HOH A 23 350 31 HOH HOH . G 4 HOH A 24 351 32 HOH HOH . G 4 HOH A 25 352 33 HOH HOH . G 4 HOH A 26 353 34 HOH HOH . G 4 HOH A 27 354 35 HOH HOH . G 4 HOH A 28 355 37 HOH HOH . G 4 HOH A 29 356 38 HOH HOH . G 4 HOH A 30 357 41 HOH HOH . G 4 HOH A 31 358 43 HOH HOH . G 4 HOH A 32 359 47 HOH HOH . G 4 HOH A 33 360 50 HOH HOH . G 4 HOH A 34 361 51 HOH HOH . G 4 HOH A 35 362 52 HOH HOH . G 4 HOH A 36 363 59 HOH HOH . G 4 HOH A 37 364 64 HOH HOH . G 4 HOH A 38 365 65 HOH HOH . G 4 HOH A 39 366 68 HOH HOH . G 4 HOH A 40 368 69 HOH HOH . G 4 HOH A 41 369 70 HOH HOH . G 4 HOH A 42 370 71 HOH HOH . G 4 HOH A 43 371 74 HOH HOH . G 4 HOH A 44 372 78 HOH HOH . G 4 HOH A 45 373 81 HOH HOH . G 4 HOH A 46 374 82 HOH HOH . G 4 HOH A 47 375 83 HOH HOH . G 4 HOH A 48 376 86 HOH HOH . G 4 HOH A 49 377 88 HOH HOH . G 4 HOH A 50 378 90 HOH HOH . G 4 HOH A 51 379 91 HOH HOH . G 4 HOH A 52 380 95 HOH HOH . G 4 HOH A 53 381 96 HOH HOH . G 4 HOH A 54 382 99 HOH HOH . G 4 HOH A 55 383 101 HOH HOH . G 4 HOH A 56 384 104 HOH HOH . G 4 HOH A 57 385 108 HOH HOH . G 4 HOH A 58 386 111 HOH HOH . G 4 HOH A 59 387 112 HOH HOH . G 4 HOH A 60 388 114 HOH HOH . G 4 HOH A 61 389 115 HOH HOH . G 4 HOH A 62 390 116 HOH HOH . G 4 HOH A 63 391 121 HOH HOH . G 4 HOH A 64 392 123 HOH HOH . G 4 HOH A 65 393 124 HOH HOH . G 4 HOH A 66 394 126 HOH HOH . G 4 HOH A 67 395 127 HOH HOH . G 4 HOH A 68 396 133 HOH HOH . G 4 HOH A 69 397 134 HOH HOH . G 4 HOH A 70 398 141 HOH HOH . G 4 HOH A 71 399 145 HOH HOH . G 4 HOH A 72 400 147 HOH HOH . G 4 HOH A 73 401 150 HOH HOH . G 4 HOH A 74 402 152 HOH HOH . G 4 HOH A 75 403 153 HOH HOH . G 4 HOH A 76 404 156 HOH HOH . G 4 HOH A 77 405 157 HOH HOH . G 4 HOH A 78 406 160 HOH HOH . G 4 HOH A 79 407 161 HOH HOH . G 4 HOH A 80 408 162 HOH HOH . G 4 HOH A 81 409 166 HOH HOH . G 4 HOH A 82 410 167 HOH HOH . G 4 HOH A 83 411 170 HOH HOH . G 4 HOH A 84 412 176 HOH HOH . G 4 HOH A 85 413 177 HOH HOH . G 4 HOH A 86 414 179 HOH HOH . G 4 HOH A 87 415 180 HOH HOH . G 4 HOH A 88 416 193 HOH HOH . G 4 HOH A 89 417 194 HOH HOH . G 4 HOH A 90 418 196 HOH HOH . G 4 HOH A 91 419 203 HOH HOH . G 4 HOH A 92 420 207 HOH HOH . G 4 HOH A 93 421 208 HOH HOH . G 4 HOH A 94 422 216 HOH HOH . G 4 HOH A 95 423 232 HOH HOH . G 4 HOH A 96 424 235 HOH HOH . G 4 HOH A 97 425 236 HOH HOH . G 4 HOH A 98 426 238 HOH HOH . G 4 HOH A 99 427 249 HOH HOH . G 4 HOH A 100 428 250 HOH HOH . G 4 HOH A 101 429 257 HOH HOH . G 4 HOH A 102 430 259 HOH HOH . G 4 HOH A 103 431 261 HOH HOH . G 4 HOH A 104 432 264 HOH HOH . G 4 HOH A 105 433 266 HOH HOH . G 4 HOH A 106 434 270 HOH HOH . G 4 HOH A 107 435 287 HOH HOH . G 4 HOH A 108 436 297 HOH HOH . G 4 HOH A 109 437 319 HOH HOH . G 4 HOH A 110 438 326 HOH HOH . H 4 HOH B 1 329 7 HOH HOH . H 4 HOH B 2 330 11 HOH HOH . H 4 HOH B 3 331 17 HOH HOH . H 4 HOH B 4 332 20 HOH HOH . H 4 HOH B 5 333 21 HOH HOH . H 4 HOH B 6 334 24 HOH HOH . H 4 HOH B 7 335 25 HOH HOH . H 4 HOH B 8 336 27 HOH HOH . H 4 HOH B 9 337 36 HOH HOH . H 4 HOH B 10 338 39 HOH HOH . H 4 HOH B 11 339 42 HOH HOH . H 4 HOH B 12 340 44 HOH HOH . H 4 HOH B 13 341 45 HOH HOH . H 4 HOH B 14 342 46 HOH HOH . H 4 HOH B 15 343 48 HOH HOH . H 4 HOH B 16 344 49 HOH HOH . H 4 HOH B 17 345 54 HOH HOH . H 4 HOH B 18 346 56 HOH HOH . H 4 HOH B 19 347 57 HOH HOH . H 4 HOH B 20 348 62 HOH HOH . H 4 HOH B 21 349 63 HOH HOH . H 4 HOH B 22 350 66 HOH HOH . H 4 HOH B 23 351 75 HOH HOH . H 4 HOH B 24 352 76 HOH HOH . H 4 HOH B 25 353 77 HOH HOH . H 4 HOH B 26 354 79 HOH HOH . H 4 HOH B 27 355 80 HOH HOH . H 4 HOH B 28 356 85 HOH HOH . H 4 HOH B 29 357 87 HOH HOH . H 4 HOH B 30 358 89 HOH HOH . H 4 HOH B 31 359 92 HOH HOH . H 4 HOH B 32 360 93 HOH HOH . H 4 HOH B 33 361 100 HOH HOH . H 4 HOH B 34 362 107 HOH HOH . H 4 HOH B 35 363 109 HOH HOH . H 4 HOH B 36 364 110 HOH HOH . H 4 HOH B 37 365 113 HOH HOH . H 4 HOH B 38 366 119 HOH HOH . H 4 HOH B 39 368 120 HOH HOH . H 4 HOH B 40 369 125 HOH HOH . H 4 HOH B 41 370 128 HOH HOH . H 4 HOH B 42 371 129 HOH HOH . H 4 HOH B 43 372 132 HOH HOH . H 4 HOH B 44 373 137 HOH HOH . H 4 HOH B 45 374 138 HOH HOH . H 4 HOH B 46 375 139 HOH HOH . H 4 HOH B 47 376 142 HOH HOH . H 4 HOH B 48 377 146 HOH HOH . H 4 HOH B 49 378 148 HOH HOH . H 4 HOH B 50 379 151 HOH HOH . H 4 HOH B 51 380 154 HOH HOH . H 4 HOH B 52 381 165 HOH HOH . H 4 HOH B 53 382 168 HOH HOH . H 4 HOH B 54 383 172 HOH HOH . H 4 HOH B 55 384 173 HOH HOH . H 4 HOH B 56 385 175 HOH HOH . H 4 HOH B 57 386 181 HOH HOH . H 4 HOH B 58 387 182 HOH HOH . H 4 HOH B 59 388 184 HOH HOH . H 4 HOH B 60 389 187 HOH HOH . H 4 HOH B 61 390 189 HOH HOH . H 4 HOH B 62 391 195 HOH HOH . H 4 HOH B 63 392 202 HOH HOH . H 4 HOH B 64 393 204 HOH HOH . H 4 HOH B 65 394 209 HOH HOH . H 4 HOH B 66 395 210 HOH HOH . H 4 HOH B 67 396 213 HOH HOH . H 4 HOH B 68 397 214 HOH HOH . H 4 HOH B 69 398 219 HOH HOH . H 4 HOH B 70 399 229 HOH HOH . H 4 HOH B 71 400 233 HOH HOH . H 4 HOH B 72 401 242 HOH HOH . H 4 HOH B 73 402 247 HOH HOH . H 4 HOH B 74 403 255 HOH HOH . H 4 HOH B 75 404 262 HOH HOH . H 4 HOH B 76 405 263 HOH HOH . H 4 HOH B 77 406 265 HOH HOH . H 4 HOH B 78 407 268 HOH HOH . H 4 HOH B 79 408 269 HOH HOH . H 4 HOH B 80 409 277 HOH HOH . H 4 HOH B 81 410 278 HOH HOH . H 4 HOH B 82 411 280 HOH HOH . H 4 HOH B 83 412 281 HOH HOH . H 4 HOH B 84 413 318 HOH HOH . H 4 HOH B 85 414 320 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . C 2 -2.147 -12.013 22.2 1 74.47 ? C1 NAG 367 A 1 HETATM 2 C C2 NAG . . . C 2 -1.234 -11.221 23.127 1 76.3 ? C2 NAG 367 A 1 HETATM 3 C C3 NAG . . . C 2 0.109 -11.946 23.279 1 77.84 ? C3 NAG 367 A 1 HETATM 4 C C4 NAG . . . C 2 -0.099 -13.424 23.702 1 78.45 ? C4 NAG 367 A 1 HETATM 5 C C5 NAG . . . C 2 -1.16 -14.097 22.821 1 77.63 ? C5 NAG 367 A 1 HETATM 6 C C6 NAG . . . C 2 -1.546 -15.489 23.367 1 78.9 ? C6 NAG 367 A 1 HETATM 7 C C7 NAG . . . C 2 -1.574 -8.776 23.299 1 78.81 ? C7 NAG 367 A 1 HETATM 8 C C8 NAG . . . C 2 -1.108 -7.491 22.682 1 79.61 ? C8 NAG 367 A 1 HETATM 9 N N2 NAG . . . C 2 -0.979 -9.851 22.71 1 77.29 ? N2 NAG 367 A 1 HETATM 10 O O3 NAG . . . C 2 0.881 -11.287 24.303 1 79.97 ? O3 NAG 367 A 1 HETATM 11 O O4 NAG . . . C 2 1.139 -14.119 23.518 1 80.89 ? O4 NAG 367 A 1 HETATM 12 O O5 NAG . . . C 2 -2.354 -13.303 22.744 1 75.88 ? O5 NAG 367 A 1 HETATM 13 O O6 NAG . . . C 2 -1.195 -16.471 22.404 1 81.09 ? O6 NAG 367 A 1 HETATM 14 O O7 NAG . . . C 2 -2.424 -8.835 24.202 1 80.82 ? O7 NAG 367 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #