data_3OQK # _model_server_result.job_id CY-FoifNn8aQgm2yrchOqw _model_server_result.datetime_utc '2024-12-21 16:14:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3oqk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":327}' # _entry.id 3OQK # _exptl.entry_id 3OQK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 397.469 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-phenoxy-1-phenyl-3-(piperazin-1-ylcarbonyl)-1H-indole _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3OQK _cell.length_a 141.387 _cell.length_b 141.387 _cell.length_c 141.387 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OQK _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,H 1 1 B,E,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 51 A CYS 45 1_555 A SG CYS 58 A CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf2 A SG CYS 217 A CYS 206 1_555 A SG CYS 221 A CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 259 A CYS 249 1_555 A SG CYS 296 A CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf4 B SG CYS 51 B CYS 45 1_555 B SG CYS 58 B CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf5 B SG CYS 217 B CYS 206 1_555 B SG CYS 221 B CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 B SG CYS 259 B CYS 249 1_555 B SG CYS 296 B CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 A ND2 ASN 75 A ASN 67 1_555 C C1 NAG . A NAG 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.467 ? covale ? covale2 B ND2 ASN 75 B ASN 67 1_555 E C1 NAG . B NAG 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.472 ? # _chem_comp.formula 'C25 H23 N3 O2' _chem_comp.formula_weight 397.469 _chem_comp.id S52 _chem_comp.mon_nstd_flag . _chem_comp.name 2-phenoxy-1-phenyl-3-(piperazin-1-ylcarbonyl)-1H-indole _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (2-Phenoxy-1-phenyl-1H-indol-3-yl)-piperazin-1-yl-methanone # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 S52 doub 320 n y C1 C6 S52 sing 321 n y O1 C16 S52 sing 322 n n O1 C26 S52 sing 323 n n C2 C3 S52 sing 324 n y C3 C4 S52 doub 325 n y C4 C5 S52 sing 326 n y C4 N12 S52 sing 327 n y C5 C6 S52 doub 328 n y N12 C13 S52 sing 329 n y N12 C16 S52 sing 330 n y C13 C14 S52 doub 331 n y C13 C17 S52 sing 332 n y C14 C15 S52 sing 333 n y C14 C20 S52 sing 334 n y C15 C16 S52 doub 335 n y C15 C39 S52 sing 336 n n C17 C18 S52 doub 337 n y C18 C19 S52 sing 338 n y C19 C20 S52 doub 339 n y C26 C29 S52 doub 340 n y C26 C33 S52 sing 341 n y C29 C30 S52 sing 342 n y C30 C31 S52 doub 343 n y C31 C32 S52 sing 344 n y C32 C33 S52 doub 345 n y C39 N40 S52 sing 346 n n C39 O41 S52 doub 347 n n N40 C42 S52 sing 348 n n N40 C46 S52 sing 349 n n C42 C43 S52 sing 350 n n C43 N44 S52 sing 351 n n N44 C45 S52 sing 352 n n C45 C46 S52 sing 353 n n C1 H1 S52 sing 354 n n C2 H2 S52 sing 355 n n C3 H3 S52 sing 356 n n C5 H5 S52 sing 357 n n C6 H6 S52 sing 358 n n C17 H17 S52 sing 359 n n C18 H18 S52 sing 360 n n C19 H19 S52 sing 361 n n C20 H20 S52 sing 362 n n C29 H29 S52 sing 363 n n C30 H30 S52 sing 364 n n C31 H31 S52 sing 365 n n C32 H32 S52 sing 366 n n C33 H33 S52 sing 367 n n C42 H42 S52 sing 368 n n C42 H42A S52 sing 369 n n C43 H43 S52 sing 370 n n C43 H43A S52 sing 371 n n N44 HN44 S52 sing 372 n n C45 H45 S52 sing 373 n n C45 H45A S52 sing 374 n n C46 H46 S52 sing 375 n n C46 H46A S52 sing 376 n n # _atom_sites.entry_id 3OQK _atom_sites.fract_transf_matrix[1][1] 0.007073 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007073 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007073 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG A 1 367 367 NAG NAG . D 3 S52 A 1 327 327 S52 S52 . E 2 NAG B 1 367 367 NAG NAG . F 3 S52 B 1 327 327 S52 S52 . G 4 GOL B 1 328 328 GOL GOL . H 5 HOH A 1 328 328 HOH HOH . H 5 HOH A 2 329 329 HOH HOH . H 5 HOH A 3 330 330 HOH HOH . H 5 HOH A 4 331 331 HOH HOH . H 5 HOH A 5 332 332 HOH HOH . H 5 HOH A 6 333 333 HOH HOH . H 5 HOH A 7 334 334 HOH HOH . H 5 HOH A 8 335 335 HOH HOH . H 5 HOH A 9 336 336 HOH HOH . H 5 HOH A 10 337 337 HOH HOH . H 5 HOH A 11 338 338 HOH HOH . H 5 HOH A 12 339 339 HOH HOH . H 5 HOH A 13 340 340 HOH HOH . H 5 HOH A 14 341 341 HOH HOH . H 5 HOH A 15 342 342 HOH HOH . H 5 HOH A 16 343 343 HOH HOH . H 5 HOH A 17 344 344 HOH HOH . H 5 HOH A 18 345 345 HOH HOH . H 5 HOH A 19 346 346 HOH HOH . H 5 HOH A 20 347 347 HOH HOH . H 5 HOH A 21 348 348 HOH HOH . H 5 HOH A 22 349 349 HOH HOH . H 5 HOH A 23 350 350 HOH HOH . H 5 HOH A 24 351 351 HOH HOH . H 5 HOH A 25 352 352 HOH HOH . H 5 HOH A 26 353 353 HOH HOH . H 5 HOH A 27 354 354 HOH HOH . H 5 HOH A 28 355 355 HOH HOH . H 5 HOH A 29 356 356 HOH HOH . H 5 HOH A 30 357 357 HOH HOH . H 5 HOH A 31 358 358 HOH HOH . H 5 HOH A 32 359 359 HOH HOH . H 5 HOH A 33 360 360 HOH HOH . H 5 HOH A 34 361 361 HOH HOH . H 5 HOH A 35 362 362 HOH HOH . H 5 HOH A 36 363 363 HOH HOH . H 5 HOH A 37 364 364 HOH HOH . H 5 HOH A 38 365 365 HOH HOH . H 5 HOH A 39 366 366 HOH HOH . H 5 HOH A 40 368 368 HOH HOH . H 5 HOH A 41 369 369 HOH HOH . H 5 HOH A 42 370 370 HOH HOH . H 5 HOH A 43 371 371 HOH HOH . H 5 HOH A 44 372 372 HOH HOH . H 5 HOH A 45 373 373 HOH HOH . H 5 HOH A 46 374 374 HOH HOH . H 5 HOH A 47 375 375 HOH HOH . H 5 HOH A 48 376 376 HOH HOH . H 5 HOH A 49 377 377 HOH HOH . H 5 HOH A 50 378 378 HOH HOH . H 5 HOH A 51 379 379 HOH HOH . H 5 HOH A 52 380 380 HOH HOH . H 5 HOH A 53 381 381 HOH HOH . H 5 HOH A 54 382 382 HOH HOH . H 5 HOH A 55 383 383 HOH HOH . H 5 HOH A 56 384 384 HOH HOH . H 5 HOH A 57 385 385 HOH HOH . H 5 HOH A 58 386 386 HOH HOH . H 5 HOH A 59 387 387 HOH HOH . H 5 HOH A 60 388 388 HOH HOH . H 5 HOH A 61 389 389 HOH HOH . H 5 HOH A 62 390 390 HOH HOH . H 5 HOH A 63 391 391 HOH HOH . H 5 HOH A 64 392 392 HOH HOH . H 5 HOH A 65 393 393 HOH HOH . H 5 HOH A 66 394 394 HOH HOH . H 5 HOH A 67 395 395 HOH HOH . H 5 HOH A 68 396 396 HOH HOH . H 5 HOH A 69 397 397 HOH HOH . H 5 HOH A 70 398 398 HOH HOH . H 5 HOH A 71 399 399 HOH HOH . H 5 HOH A 72 400 400 HOH HOH . H 5 HOH A 73 401 401 HOH HOH . H 5 HOH A 74 402 402 HOH HOH . H 5 HOH A 75 403 403 HOH HOH . H 5 HOH A 76 404 404 HOH HOH . H 5 HOH A 77 405 405 HOH HOH . H 5 HOH A 78 406 406 HOH HOH . H 5 HOH A 79 407 407 HOH HOH . H 5 HOH A 80 408 408 HOH HOH . H 5 HOH A 81 409 409 HOH HOH . H 5 HOH A 82 410 410 HOH HOH . H 5 HOH A 83 411 411 HOH HOH . H 5 HOH A 84 412 412 HOH HOH . H 5 HOH A 85 413 413 HOH HOH . I 5 HOH B 1 329 329 HOH HOH . I 5 HOH B 2 330 330 HOH HOH . I 5 HOH B 3 331 331 HOH HOH . I 5 HOH B 4 332 332 HOH HOH . I 5 HOH B 5 333 333 HOH HOH . I 5 HOH B 6 334 334 HOH HOH . I 5 HOH B 7 335 335 HOH HOH . I 5 HOH B 8 336 336 HOH HOH . I 5 HOH B 9 337 337 HOH HOH . I 5 HOH B 10 338 338 HOH HOH . I 5 HOH B 11 339 339 HOH HOH . I 5 HOH B 12 340 340 HOH HOH . I 5 HOH B 13 341 341 HOH HOH . I 5 HOH B 14 342 342 HOH HOH . I 5 HOH B 15 343 343 HOH HOH . I 5 HOH B 16 344 344 HOH HOH . I 5 HOH B 17 345 345 HOH HOH . I 5 HOH B 18 346 346 HOH HOH . I 5 HOH B 19 347 347 HOH HOH . I 5 HOH B 20 348 348 HOH HOH . I 5 HOH B 21 349 349 HOH HOH . I 5 HOH B 22 350 350 HOH HOH . I 5 HOH B 23 351 351 HOH HOH . I 5 HOH B 24 352 352 HOH HOH . I 5 HOH B 25 353 353 HOH HOH . I 5 HOH B 26 354 354 HOH HOH . I 5 HOH B 27 355 355 HOH HOH . I 5 HOH B 28 356 356 HOH HOH . I 5 HOH B 29 357 357 HOH HOH . I 5 HOH B 30 358 358 HOH HOH . I 5 HOH B 31 359 359 HOH HOH . I 5 HOH B 32 360 360 HOH HOH . I 5 HOH B 33 361 361 HOH HOH . I 5 HOH B 34 362 362 HOH HOH . I 5 HOH B 35 363 363 HOH HOH . I 5 HOH B 36 364 364 HOH HOH . I 5 HOH B 37 365 365 HOH HOH . I 5 HOH B 38 366 366 HOH HOH . I 5 HOH B 39 368 368 HOH HOH . I 5 HOH B 40 369 369 HOH HOH . I 5 HOH B 41 370 370 HOH HOH . I 5 HOH B 42 371 371 HOH HOH . I 5 HOH B 43 372 372 HOH HOH . I 5 HOH B 44 373 373 HOH HOH . I 5 HOH B 45 374 374 HOH HOH . I 5 HOH B 46 375 375 HOH HOH . I 5 HOH B 47 376 376 HOH HOH . I 5 HOH B 48 377 377 HOH HOH . I 5 HOH B 49 378 378 HOH HOH . I 5 HOH B 50 379 379 HOH HOH . I 5 HOH B 51 380 380 HOH HOH . I 5 HOH B 52 381 381 HOH HOH . I 5 HOH B 53 382 382 HOH HOH . I 5 HOH B 54 383 383 HOH HOH . I 5 HOH B 55 384 384 HOH HOH . I 5 HOH B 56 385 385 HOH HOH . I 5 HOH B 57 386 386 HOH HOH . I 5 HOH B 58 387 387 HOH HOH . I 5 HOH B 59 388 388 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 S52 . . . F 3 -28.766 -50.892 -21.587 1 67.13 ? C1 S52 327 B 1 HETATM 2 O O1 S52 . . . F 3 -30.734 -55.401 -20.291 1 61.63 ? O1 S52 327 B 1 HETATM 3 C C2 S52 . . . F 3 -29.926 -50.418 -20.949 1 68.88 ? C2 S52 327 B 1 HETATM 4 C C3 S52 . . . F 3 -31.026 -51.265 -20.725 1 67.35 ? C3 S52 327 B 1 HETATM 5 C C4 S52 . . . F 3 -31.023 -52.625 -21.127 1 64.34 ? C4 S52 327 B 1 HETATM 6 C C5 S52 . . . F 3 -29.822 -53.052 -21.768 1 62.68 ? C5 S52 327 B 1 HETATM 7 C C6 S52 . . . F 3 -28.715 -52.227 -21.999 1 64.03 ? C6 S52 327 B 1 HETATM 8 N N12 S52 . . . F 3 -32.066 -53.471 -20.924 1 60.7 ? N12 S52 327 B 1 HETATM 9 C C13 S52 . . . F 3 -33.377 -53.174 -21.065 1 54.92 ? C13 S52 327 B 1 HETATM 10 C C14 S52 . . . F 3 -34.104 -54.367 -20.759 1 54.12 ? C14 S52 327 B 1 HETATM 11 C C15 S52 . . . F 3 -33.172 -55.341 -20.415 1 59.14 ? C15 S52 327 B 1 HETATM 12 C C16 S52 . . . F 3 -31.925 -54.759 -20.561 1 61.52 ? C16 S52 327 B 1 HETATM 13 C C17 S52 . . . F 3 -34.092 -52.027 -21.414 1 51.09 ? C17 S52 327 B 1 HETATM 14 C C18 S52 . . . F 3 -35.502 -52.089 -21.456 1 51.04 ? C18 S52 327 B 1 HETATM 15 C C19 S52 . . . F 3 -36.206 -53.269 -21.158 1 49.79 ? C19 S52 327 B 1 HETATM 16 C C20 S52 . . . F 3 -35.504 -54.421 -20.804 1 50.44 ? C20 S52 327 B 1 HETATM 17 C C26 S52 . . . F 3 -30.569 -56.084 -19.117 1 60.47 ? C26 S52 327 B 1 HETATM 18 C C29 S52 . . . F 3 -30.154 -57.427 -19.178 1 63.36 ? C29 S52 327 B 1 HETATM 19 C C30 S52 . . . F 3 -29.974 -58.187 -18.013 1 65.54 ? C30 S52 327 B 1 HETATM 20 C C31 S52 . . . F 3 -30.23 -57.572 -16.776 1 67.87 ? C31 S52 327 B 1 HETATM 21 C C32 S52 . . . F 3 -30.65 -56.222 -16.718 1 65.53 ? C32 S52 327 B 1 HETATM 22 C C33 S52 . . . F 3 -30.826 -55.465 -17.89 1 59.94 ? C33 S52 327 B 1 HETATM 23 C C39 S52 . . . F 3 -33.521 -56.766 -20.08 1 64.01 ? C39 S52 327 B 1 HETATM 24 N N40 S52 . . . F 3 -34.3 -57.175 -19.062 1 65.03 ? N40 S52 327 B 1 HETATM 25 O O41 S52 . . . F 3 -33.015 -57.589 -20.831 1 66.97 ? O41 S52 327 B 1 HETATM 26 C C42 S52 . . . F 3 -34.952 -56.27 -18.109 1 66.07 ? C42 S52 327 B 1 HETATM 27 C C43 S52 . . . F 3 -34.473 -56.675 -16.719 1 65.56 ? C43 S52 327 B 1 HETATM 28 N N44 S52 . . . F 3 -34.732 -58.08 -16.445 1 64.51 ? N44 S52 327 B 1 HETATM 29 C C45 S52 . . . F 3 -34.255 -59.029 -17.418 1 64.91 ? C45 S52 327 B 1 HETATM 30 C C46 S52 . . . F 3 -34.564 -58.61 -18.862 1 65.09 ? C46 S52 327 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 19 _model_server_stats.element_count 30 #