data_3OQK
#
_model_server_result.job_id            OwSlC3S8I9Ff75kG-vlwWQ 
_model_server_result.datetime_utc      '2024-12-21 16:19:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3oqk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":328}' 
#
_entry.id    3OQK 
#
_exptl.entry_id    3OQK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3OQK 
_cell.length_a            141.387 
_cell.length_b            141.387 
_cell.length_c            141.387 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3OQK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        198 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 3' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,H 1 1 
B,E,F,G,I 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 51 A CYS 45 1_555 A SG CYS 58 A CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? 
disulf ? disulf2 A SG CYS 217 A CYS 206 1_555 A SG CYS 221 A CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf3 A SG CYS 259 A CYS 249 1_555 A SG CYS 296 A CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf4 B SG CYS 51 B CYS 45 1_555 B SG CYS 58 B CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
disulf ? disulf5 B SG CYS 217 B CYS 206 1_555 B SG CYS 221 B CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf6 B SG CYS 259 B CYS 249 1_555 B SG CYS 296 B CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
covale ? covale1 A ND2 ASN 75 A ASN 67 1_555 C C1 NAG . A NAG 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.467 ? 
covale ? covale2 B ND2 ASN 75 B ASN 67 1_555 E C1 NAG . B NAG 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.472 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     3OQK 
_atom_sites.fract_transf_matrix[1][1]    0.007073 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007073 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007073 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAG A 1 367 367 NAG NAG . 
D 3 S52 A 1 327 327 S52 S52 . 
E 2 NAG B 1 367 367 NAG NAG . 
F 3 S52 B 1 327 327 S52 S52 . 
G 4 GOL B 1 328 328 GOL GOL . 
H 5 HOH A 1 328 328 HOH HOH . 
H 5 HOH A 2 329 329 HOH HOH . 
H 5 HOH A 3 330 330 HOH HOH . 
H 5 HOH A 4 331 331 HOH HOH . 
H 5 HOH A 5 332 332 HOH HOH . 
H 5 HOH A 6 333 333 HOH HOH . 
H 5 HOH A 7 334 334 HOH HOH . 
H 5 HOH A 8 335 335 HOH HOH . 
H 5 HOH A 9 336 336 HOH HOH . 
H 5 HOH A 10 337 337 HOH HOH . 
H 5 HOH A 11 338 338 HOH HOH . 
H 5 HOH A 12 339 339 HOH HOH . 
H 5 HOH A 13 340 340 HOH HOH . 
H 5 HOH A 14 341 341 HOH HOH . 
H 5 HOH A 15 342 342 HOH HOH . 
H 5 HOH A 16 343 343 HOH HOH . 
H 5 HOH A 17 344 344 HOH HOH . 
H 5 HOH A 18 345 345 HOH HOH . 
H 5 HOH A 19 346 346 HOH HOH . 
H 5 HOH A 20 347 347 HOH HOH . 
H 5 HOH A 21 348 348 HOH HOH . 
H 5 HOH A 22 349 349 HOH HOH . 
H 5 HOH A 23 350 350 HOH HOH . 
H 5 HOH A 24 351 351 HOH HOH . 
H 5 HOH A 25 352 352 HOH HOH . 
H 5 HOH A 26 353 353 HOH HOH . 
H 5 HOH A 27 354 354 HOH HOH . 
H 5 HOH A 28 355 355 HOH HOH . 
H 5 HOH A 29 356 356 HOH HOH . 
H 5 HOH A 30 357 357 HOH HOH . 
H 5 HOH A 31 358 358 HOH HOH . 
H 5 HOH A 32 359 359 HOH HOH . 
H 5 HOH A 33 360 360 HOH HOH . 
H 5 HOH A 34 361 361 HOH HOH . 
H 5 HOH A 35 362 362 HOH HOH . 
H 5 HOH A 36 363 363 HOH HOH . 
H 5 HOH A 37 364 364 HOH HOH . 
H 5 HOH A 38 365 365 HOH HOH . 
H 5 HOH A 39 366 366 HOH HOH . 
H 5 HOH A 40 368 368 HOH HOH . 
H 5 HOH A 41 369 369 HOH HOH . 
H 5 HOH A 42 370 370 HOH HOH . 
H 5 HOH A 43 371 371 HOH HOH . 
H 5 HOH A 44 372 372 HOH HOH . 
H 5 HOH A 45 373 373 HOH HOH . 
H 5 HOH A 46 374 374 HOH HOH . 
H 5 HOH A 47 375 375 HOH HOH . 
H 5 HOH A 48 376 376 HOH HOH . 
H 5 HOH A 49 377 377 HOH HOH . 
H 5 HOH A 50 378 378 HOH HOH . 
H 5 HOH A 51 379 379 HOH HOH . 
H 5 HOH A 52 380 380 HOH HOH . 
H 5 HOH A 53 381 381 HOH HOH . 
H 5 HOH A 54 382 382 HOH HOH . 
H 5 HOH A 55 383 383 HOH HOH . 
H 5 HOH A 56 384 384 HOH HOH . 
H 5 HOH A 57 385 385 HOH HOH . 
H 5 HOH A 58 386 386 HOH HOH . 
H 5 HOH A 59 387 387 HOH HOH . 
H 5 HOH A 60 388 388 HOH HOH . 
H 5 HOH A 61 389 389 HOH HOH . 
H 5 HOH A 62 390 390 HOH HOH . 
H 5 HOH A 63 391 391 HOH HOH . 
H 5 HOH A 64 392 392 HOH HOH . 
H 5 HOH A 65 393 393 HOH HOH . 
H 5 HOH A 66 394 394 HOH HOH . 
H 5 HOH A 67 395 395 HOH HOH . 
H 5 HOH A 68 396 396 HOH HOH . 
H 5 HOH A 69 397 397 HOH HOH . 
H 5 HOH A 70 398 398 HOH HOH . 
H 5 HOH A 71 399 399 HOH HOH . 
H 5 HOH A 72 400 400 HOH HOH . 
H 5 HOH A 73 401 401 HOH HOH . 
H 5 HOH A 74 402 402 HOH HOH . 
H 5 HOH A 75 403 403 HOH HOH . 
H 5 HOH A 76 404 404 HOH HOH . 
H 5 HOH A 77 405 405 HOH HOH . 
H 5 HOH A 78 406 406 HOH HOH . 
H 5 HOH A 79 407 407 HOH HOH . 
H 5 HOH A 80 408 408 HOH HOH . 
H 5 HOH A 81 409 409 HOH HOH . 
H 5 HOH A 82 410 410 HOH HOH . 
H 5 HOH A 83 411 411 HOH HOH . 
H 5 HOH A 84 412 412 HOH HOH . 
H 5 HOH A 85 413 413 HOH HOH . 
I 5 HOH B 1 329 329 HOH HOH . 
I 5 HOH B 2 330 330 HOH HOH . 
I 5 HOH B 3 331 331 HOH HOH . 
I 5 HOH B 4 332 332 HOH HOH . 
I 5 HOH B 5 333 333 HOH HOH . 
I 5 HOH B 6 334 334 HOH HOH . 
I 5 HOH B 7 335 335 HOH HOH . 
I 5 HOH B 8 336 336 HOH HOH . 
I 5 HOH B 9 337 337 HOH HOH . 
I 5 HOH B 10 338 338 HOH HOH . 
I 5 HOH B 11 339 339 HOH HOH . 
I 5 HOH B 12 340 340 HOH HOH . 
I 5 HOH B 13 341 341 HOH HOH . 
I 5 HOH B 14 342 342 HOH HOH . 
I 5 HOH B 15 343 343 HOH HOH . 
I 5 HOH B 16 344 344 HOH HOH . 
I 5 HOH B 17 345 345 HOH HOH . 
I 5 HOH B 18 346 346 HOH HOH . 
I 5 HOH B 19 347 347 HOH HOH . 
I 5 HOH B 20 348 348 HOH HOH . 
I 5 HOH B 21 349 349 HOH HOH . 
I 5 HOH B 22 350 350 HOH HOH . 
I 5 HOH B 23 351 351 HOH HOH . 
I 5 HOH B 24 352 352 HOH HOH . 
I 5 HOH B 25 353 353 HOH HOH . 
I 5 HOH B 26 354 354 HOH HOH . 
I 5 HOH B 27 355 355 HOH HOH . 
I 5 HOH B 28 356 356 HOH HOH . 
I 5 HOH B 29 357 357 HOH HOH . 
I 5 HOH B 30 358 358 HOH HOH . 
I 5 HOH B 31 359 359 HOH HOH . 
I 5 HOH B 32 360 360 HOH HOH . 
I 5 HOH B 33 361 361 HOH HOH . 
I 5 HOH B 34 362 362 HOH HOH . 
I 5 HOH B 35 363 363 HOH HOH . 
I 5 HOH B 36 364 364 HOH HOH . 
I 5 HOH B 37 365 365 HOH HOH . 
I 5 HOH B 38 366 366 HOH HOH . 
I 5 HOH B 39 368 368 HOH HOH . 
I 5 HOH B 40 369 369 HOH HOH . 
I 5 HOH B 41 370 370 HOH HOH . 
I 5 HOH B 42 371 371 HOH HOH . 
I 5 HOH B 43 372 372 HOH HOH . 
I 5 HOH B 44 373 373 HOH HOH . 
I 5 HOH B 45 374 374 HOH HOH . 
I 5 HOH B 46 375 375 HOH HOH . 
I 5 HOH B 47 376 376 HOH HOH . 
I 5 HOH B 48 377 377 HOH HOH . 
I 5 HOH B 49 378 378 HOH HOH . 
I 5 HOH B 50 379 379 HOH HOH . 
I 5 HOH B 51 380 380 HOH HOH . 
I 5 HOH B 52 381 381 HOH HOH . 
I 5 HOH B 53 382 382 HOH HOH . 
I 5 HOH B 54 383 383 HOH HOH . 
I 5 HOH B 55 384 384 HOH HOH . 
I 5 HOH B 56 385 385 HOH HOH . 
I 5 HOH B 57 386 386 HOH HOH . 
I 5 HOH B 58 387 387 HOH HOH . 
I 5 HOH B 59 388 388 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . G 4 -30.997 -51.794 -16.534 1 51.58 ? C1 GOL 328 B 1 
HETATM 2 O O1 GOL . . . G 4 -31.4 -50.821 -17.56 1 56.87 ? O1 GOL 328 B 1 
HETATM 3 C C2 GOL . . . G 4 -31.176 -51.262 -15.192 1 49.34 ? C2 GOL 328 B 1 
HETATM 4 O O2 GOL . . . G 4 -30.462 -50.092 -15.15 1 48.32 ? O2 GOL 328 B 1 
HETATM 5 C C3 GOL . . . G 4 -32.546 -50.918 -15.153 1 49.34 ? C3 GOL 328 B 1 
HETATM 6 O O3 GOL . . . G 4 -32.849 -49.905 -16.044 1 50.65 ? O3 GOL 328 B 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           520 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           6 
#