data_3OQT # _model_server_result.job_id wK2wksfKg5C4Aax1u9AtOg _model_server_result.datetime_utc '2024-10-20 20:49:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3oqt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":112}' # _entry.id 3OQT # _exptl.entry_id 3OQT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3OQT _cell.length_a 143.946 _cell.length_b 143.946 _cell.length_c 143.946 _cell.Z_PDB 192 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OQT _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dodecameric 12 author_and_software_defined_assembly 1 PISA dodecameric 12 author_and_software_defined_assembly 2 PISA dodecameric 12 author_and_software_defined_assembly 3 PISA dodecameric 12 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,Q,R,S,DA,EA,FA,GA 1 1,2,3 E,F,G,H,T,U,V,HA,IA,JA,KA 2 1,2,3 I,J,K,L,W,X,Y,Z,LA,MA,NA,OA 3 1,4,5 M,N,O,P,AA,BA,CA,PA,QA,RA,SA 4 1,4,5 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_445 z-1/2,-x-1/2,-y 0 0 1 -1 0 0 0 -1 0 -71.973 -71.973 0 3 'crystal symmetry operation' 12_455 -y-1/2,-z,x+1/2 0 -1 0 0 0 -1 1 0 0 -71.973 0 71.973 4 'crystal symmetry operation' 8_454 -z-1,x+1/2,-y-1/2 0 0 -1 1 0 0 0 -1 0 -143.946 71.973 -71.973 5 'crystal symmetry operation' 11_444 y-1/2,-z-1/2,-x-1 0 1 0 0 0 -1 -1 0 0 -71.973 -71.973 -143.946 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 S N N ? 3 V N N ? 3 W N N ? 3 Z N N ? 3 CA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 S NA NA . C NA 111 1_555 FA O HOH . C HOH 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc2 I OD2 ASP 20 I ASP 20 1_555 W NA NA . I NA 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc3 L OD2 ASP 20 L ASP 20 1_555 Z NA NA . L NA 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.057 ? metalc ? metalc4 CA NA NA . P NA 115 1_555 SA O HOH . P HOH 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3OQT _atom_sites.fract_transf_matrix[1][1] 0.006947 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006947 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006947 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code Q 2 CL A 1 106 106 CL CL . R 2 CL C 1 102 102 CL CL . S 3 NA C 1 111 111 NA NA . T 2 CL E 1 107 107 CL CL . U 2 CL H 1 104 104 CL CL . V 3 NA H 1 112 112 NA NA . W 3 NA I 1 114 114 NA NA . X 2 CL K 1 105 105 CL CL . Y 2 CL L 1 103 103 CL CL . Z 3 NA L 1 113 113 NA NA . AA 2 CL O 1 108 108 CL CL . BA 2 CL P 1 101 101 CL CL . CA 3 NA P 1 115 115 NA NA . DA 4 HOH A 1 211 211 HOH HOH . DA 4 HOH A 2 238 238 HOH HOH . DA 4 HOH A 3 249 249 HOH HOH . DA 4 HOH A 4 285 285 HOH HOH . DA 4 HOH A 5 287 287 HOH HOH . DA 4 HOH A 6 296 296 HOH HOH . DA 4 HOH A 7 380 380 HOH HOH . DA 4 HOH A 8 413 413 HOH HOH . DA 4 HOH A 9 433 433 HOH HOH . DA 4 HOH A 10 454 454 HOH HOH . DA 4 HOH A 11 467 467 HOH HOH . EA 4 HOH B 1 241 241 HOH HOH . EA 4 HOH B 2 243 243 HOH HOH . EA 4 HOH B 3 244 244 HOH HOH . EA 4 HOH B 4 248 248 HOH HOH . EA 4 HOH B 5 266 266 HOH HOH . EA 4 HOH B 6 273 273 HOH HOH . EA 4 HOH B 7 288 288 HOH HOH . EA 4 HOH B 8 293 293 HOH HOH . EA 4 HOH B 9 318 318 HOH HOH . EA 4 HOH B 10 330 330 HOH HOH . EA 4 HOH B 11 357 357 HOH HOH . EA 4 HOH B 12 372 372 HOH HOH . EA 4 HOH B 13 378 378 HOH HOH . EA 4 HOH B 14 385 385 HOH HOH . EA 4 HOH B 15 387 387 HOH HOH . EA 4 HOH B 16 461 461 HOH HOH . FA 4 HOH C 1 201 201 HOH HOH . FA 4 HOH C 2 252 252 HOH HOH . FA 4 HOH C 3 267 267 HOH HOH . FA 4 HOH C 4 321 321 HOH HOH . FA 4 HOH C 5 343 343 HOH HOH . FA 4 HOH C 6 347 347 HOH HOH . FA 4 HOH C 7 358 358 HOH HOH . FA 4 HOH C 8 361 361 HOH HOH . FA 4 HOH C 9 362 362 HOH HOH . FA 4 HOH C 10 432 432 HOH HOH . FA 4 HOH C 11 436 436 HOH HOH . FA 4 HOH C 12 441 441 HOH HOH . FA 4 HOH C 13 460 460 HOH HOH . GA 4 HOH D 1 207 207 HOH HOH . GA 4 HOH D 2 219 219 HOH HOH . GA 4 HOH D 3 224 224 HOH HOH . GA 4 HOH D 4 226 226 HOH HOH . GA 4 HOH D 5 230 230 HOH HOH . GA 4 HOH D 6 242 242 HOH HOH . GA 4 HOH D 7 278 278 HOH HOH . GA 4 HOH D 8 313 313 HOH HOH . GA 4 HOH D 9 317 317 HOH HOH . GA 4 HOH D 10 320 320 HOH HOH . GA 4 HOH D 11 339 339 HOH HOH . GA 4 HOH D 12 341 341 HOH HOH . GA 4 HOH D 13 346 346 HOH HOH . GA 4 HOH D 14 351 351 HOH HOH . GA 4 HOH D 15 355 355 HOH HOH . GA 4 HOH D 16 365 365 HOH HOH . GA 4 HOH D 17 375 375 HOH HOH . GA 4 HOH D 18 383 383 HOH HOH . GA 4 HOH D 19 386 386 HOH HOH . GA 4 HOH D 20 401 401 HOH HOH . GA 4 HOH D 21 406 406 HOH HOH . GA 4 HOH D 22 425 425 HOH HOH . GA 4 HOH D 23 440 440 HOH HOH . HA 4 HOH E 1 204 204 HOH HOH . HA 4 HOH E 2 214 214 HOH HOH . HA 4 HOH E 3 231 231 HOH HOH . HA 4 HOH E 4 232 232 HOH HOH . HA 4 HOH E 5 240 240 HOH HOH . HA 4 HOH E 6 253 253 HOH HOH . HA 4 HOH E 7 284 284 HOH HOH . HA 4 HOH E 8 290 290 HOH HOH . HA 4 HOH E 9 326 326 HOH HOH . HA 4 HOH E 10 345 345 HOH HOH . HA 4 HOH E 11 348 348 HOH HOH . HA 4 HOH E 12 374 374 HOH HOH . HA 4 HOH E 13 381 381 HOH HOH . HA 4 HOH E 14 388 388 HOH HOH . HA 4 HOH E 15 400 400 HOH HOH . HA 4 HOH E 16 402 402 HOH HOH . HA 4 HOH E 17 416 416 HOH HOH . HA 4 HOH E 18 422 422 HOH HOH . HA 4 HOH E 19 447 447 HOH HOH . IA 4 HOH F 1 206 206 HOH HOH . IA 4 HOH F 2 254 254 HOH HOH . IA 4 HOH F 3 257 257 HOH HOH . IA 4 HOH F 4 263 263 HOH HOH . IA 4 HOH F 5 264 264 HOH HOH . IA 4 HOH F 6 295 295 HOH HOH . IA 4 HOH F 7 302 302 HOH HOH . IA 4 HOH F 8 303 303 HOH HOH . IA 4 HOH F 9 310 310 HOH HOH . IA 4 HOH F 10 328 328 HOH HOH . IA 4 HOH F 11 368 368 HOH HOH . IA 4 HOH F 12 373 373 HOH HOH . IA 4 HOH F 13 389 389 HOH HOH . IA 4 HOH F 14 396 396 HOH HOH . IA 4 HOH F 15 408 408 HOH HOH . IA 4 HOH F 16 411 411 HOH HOH . JA 4 HOH G 1 228 228 HOH HOH . JA 4 HOH G 2 276 276 HOH HOH . JA 4 HOH G 3 280 280 HOH HOH . JA 4 HOH G 4 300 300 HOH HOH . JA 4 HOH G 5 309 309 HOH HOH . JA 4 HOH G 6 325 325 HOH HOH . JA 4 HOH G 7 354 354 HOH HOH . JA 4 HOH G 8 364 364 HOH HOH . JA 4 HOH G 9 382 382 HOH HOH . JA 4 HOH G 10 397 397 HOH HOH . JA 4 HOH G 11 404 404 HOH HOH . JA 4 HOH G 12 409 409 HOH HOH . JA 4 HOH G 13 417 417 HOH HOH . JA 4 HOH G 14 421 421 HOH HOH . JA 4 HOH G 15 426 426 HOH HOH . JA 4 HOH G 16 430 430 HOH HOH . JA 4 HOH G 17 455 455 HOH HOH . JA 4 HOH G 18 459 459 HOH HOH . JA 4 HOH G 19 466 466 HOH HOH . KA 4 HOH H 1 216 216 HOH HOH . KA 4 HOH H 2 222 222 HOH HOH . KA 4 HOH H 3 245 245 HOH HOH . KA 4 HOH H 4 286 286 HOH HOH . KA 4 HOH H 5 311 311 HOH HOH . KA 4 HOH H 6 319 319 HOH HOH . KA 4 HOH H 7 336 336 HOH HOH . KA 4 HOH H 8 342 342 HOH HOH . KA 4 HOH H 9 350 350 HOH HOH . KA 4 HOH H 10 356 356 HOH HOH . KA 4 HOH H 11 359 359 HOH HOH . KA 4 HOH H 12 360 360 HOH HOH . KA 4 HOH H 13 370 370 HOH HOH . KA 4 HOH H 14 393 393 HOH HOH . KA 4 HOH H 15 394 394 HOH HOH . KA 4 HOH H 16 407 407 HOH HOH . KA 4 HOH H 17 419 419 HOH HOH . KA 4 HOH H 18 420 420 HOH HOH . KA 4 HOH H 19 439 439 HOH HOH . KA 4 HOH H 20 444 444 HOH HOH . KA 4 HOH H 21 450 450 HOH HOH . KA 4 HOH H 22 451 451 HOH HOH . KA 4 HOH H 23 463 463 HOH HOH . LA 4 HOH I 1 215 215 HOH HOH . LA 4 HOH I 2 220 220 HOH HOH . LA 4 HOH I 3 236 236 HOH HOH . LA 4 HOH I 4 256 256 HOH HOH . LA 4 HOH I 5 260 260 HOH HOH . LA 4 HOH I 6 283 283 HOH HOH . LA 4 HOH I 7 304 304 HOH HOH . LA 4 HOH I 8 307 307 HOH HOH . LA 4 HOH I 9 331 331 HOH HOH . LA 4 HOH I 10 335 335 HOH HOH . LA 4 HOH I 11 349 349 HOH HOH . LA 4 HOH I 12 352 352 HOH HOH . LA 4 HOH I 13 363 363 HOH HOH . LA 4 HOH I 14 371 371 HOH HOH . LA 4 HOH I 15 412 412 HOH HOH . LA 4 HOH I 16 423 423 HOH HOH . LA 4 HOH I 17 427 427 HOH HOH . LA 4 HOH I 18 434 434 HOH HOH . LA 4 HOH I 19 442 442 HOH HOH . LA 4 HOH I 20 443 443 HOH HOH . LA 4 HOH I 21 456 456 HOH HOH . MA 4 HOH J 1 202 202 HOH HOH . MA 4 HOH J 2 217 217 HOH HOH . MA 4 HOH J 3 255 255 HOH HOH . MA 4 HOH J 4 259 259 HOH HOH . MA 4 HOH J 5 268 268 HOH HOH . MA 4 HOH J 6 269 269 HOH HOH . MA 4 HOH J 7 274 274 HOH HOH . MA 4 HOH J 8 297 297 HOH HOH . MA 4 HOH J 9 298 298 HOH HOH . MA 4 HOH J 10 308 308 HOH HOH . MA 4 HOH J 11 316 316 HOH HOH . MA 4 HOH J 12 323 323 HOH HOH . MA 4 HOH J 13 366 366 HOH HOH . MA 4 HOH J 14 379 379 HOH HOH . MA 4 HOH J 15 418 418 HOH HOH . MA 4 HOH J 16 424 424 HOH HOH . MA 4 HOH J 17 448 448 HOH HOH . NA 4 HOH K 1 208 208 HOH HOH . NA 4 HOH K 2 229 229 HOH HOH . NA 4 HOH K 3 239 239 HOH HOH . NA 4 HOH K 4 272 272 HOH HOH . NA 4 HOH K 5 291 291 HOH HOH . NA 4 HOH K 6 315 315 HOH HOH . NA 4 HOH K 7 334 334 HOH HOH . NA 4 HOH K 8 377 377 HOH HOH . NA 4 HOH K 9 384 384 HOH HOH . NA 4 HOH K 10 403 403 HOH HOH . NA 4 HOH K 11 414 414 HOH HOH . NA 4 HOH K 12 462 462 HOH HOH . OA 4 HOH L 1 209 209 HOH HOH . OA 4 HOH L 2 227 227 HOH HOH . OA 4 HOH L 3 235 235 HOH HOH . OA 4 HOH L 4 237 237 HOH HOH . OA 4 HOH L 5 262 262 HOH HOH . OA 4 HOH L 6 282 282 HOH HOH . OA 4 HOH L 7 322 322 HOH HOH . OA 4 HOH L 8 338 338 HOH HOH . OA 4 HOH L 9 376 376 HOH HOH . OA 4 HOH L 10 390 390 HOH HOH . OA 4 HOH L 11 391 391 HOH HOH . OA 4 HOH L 12 410 410 HOH HOH . OA 4 HOH L 13 431 431 HOH HOH . OA 4 HOH L 14 458 458 HOH HOH . OA 4 HOH L 15 464 464 HOH HOH . OA 4 HOH L 16 465 465 HOH HOH . PA 4 HOH M 1 212 212 HOH HOH . PA 4 HOH M 2 225 225 HOH HOH . PA 4 HOH M 3 234 234 HOH HOH . PA 4 HOH M 4 247 247 HOH HOH . PA 4 HOH M 5 261 261 HOH HOH . PA 4 HOH M 6 299 299 HOH HOH . PA 4 HOH M 7 301 301 HOH HOH . PA 4 HOH M 8 312 312 HOH HOH . PA 4 HOH M 9 329 329 HOH HOH . PA 4 HOH M 10 332 332 HOH HOH . PA 4 HOH M 11 344 344 HOH HOH . PA 4 HOH M 12 367 367 HOH HOH . PA 4 HOH M 13 369 369 HOH HOH . PA 4 HOH M 14 392 392 HOH HOH . PA 4 HOH M 15 429 429 HOH HOH . PA 4 HOH M 16 435 435 HOH HOH . PA 4 HOH M 17 445 445 HOH HOH . QA 4 HOH N 1 213 213 HOH HOH . QA 4 HOH N 2 221 221 HOH HOH . QA 4 HOH N 3 223 223 HOH HOH . QA 4 HOH N 4 246 246 HOH HOH . QA 4 HOH N 5 250 250 HOH HOH . QA 4 HOH N 6 251 251 HOH HOH . QA 4 HOH N 7 258 258 HOH HOH . QA 4 HOH N 8 265 265 HOH HOH . QA 4 HOH N 9 271 271 HOH HOH . QA 4 HOH N 10 275 275 HOH HOH . QA 4 HOH N 11 277 277 HOH HOH . QA 4 HOH N 12 281 281 HOH HOH . QA 4 HOH N 13 292 292 HOH HOH . QA 4 HOH N 14 305 305 HOH HOH . QA 4 HOH N 15 337 337 HOH HOH . QA 4 HOH N 16 340 340 HOH HOH . QA 4 HOH N 17 395 395 HOH HOH . QA 4 HOH N 18 398 398 HOH HOH . QA 4 HOH N 19 399 399 HOH HOH . QA 4 HOH N 20 415 415 HOH HOH . QA 4 HOH N 21 428 428 HOH HOH . QA 4 HOH N 22 446 446 HOH HOH . QA 4 HOH N 23 449 449 HOH HOH . QA 4 HOH N 24 452 452 HOH HOH . QA 4 HOH N 25 453 453 HOH HOH . QA 4 HOH N 26 457 457 HOH HOH . RA 4 HOH O 1 205 205 HOH HOH . RA 4 HOH O 2 279 279 HOH HOH . RA 4 HOH O 3 314 314 HOH HOH . RA 4 HOH O 4 324 324 HOH HOH . RA 4 HOH O 5 327 327 HOH HOH . RA 4 HOH O 6 437 437 HOH HOH . SA 4 HOH P 1 203 203 HOH HOH . SA 4 HOH P 2 210 210 HOH HOH . SA 4 HOH P 3 218 218 HOH HOH . SA 4 HOH P 4 233 233 HOH HOH . SA 4 HOH P 5 270 270 HOH HOH . SA 4 HOH P 6 289 289 HOH HOH . SA 4 HOH P 7 294 294 HOH HOH . SA 4 HOH P 8 306 306 HOH HOH . SA 4 HOH P 9 333 333 HOH HOH . SA 4 HOH P 10 353 353 HOH HOH . SA 4 HOH P 11 405 405 HOH HOH . SA 4 HOH P 12 438 438 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id V _atom_site.label_entity_id 3 _atom_site.Cartn_x -118.053 _atom_site.Cartn_y 24.825 _atom_site.Cartn_z -13.476 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 40.29 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 112 _atom_site.auth_asym_id H _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 51 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #